BACE1 inhibition for the treatment of cancer
Provided herein are compositions, systems, kits, and methods for treating a subject with cancer by administering a BACE1 inhibitor, such as MK-8931. In particular embodiments, the subject is treated with radiation (e.g., low dose radiation) first, and then administered a BACE1 inhibitor within a certain time window (e.g., about 3 hours to 6 days after the radiation treatment).
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The present application claims priority to U.S. Provisional application Ser. No. 62/896,053, filed Sep. 5, 2019, which is herein incorporated by reference in its entirety.
FIELDProvided herein are compositions, systems, kits, and methods for treating a subject with cancer by administering a BACE1 inhibitor, such as MK-8931. In particular embodiments, the subject is treated with radiation (e.g., low dose radiation) first, and then administered a BACE1 inhibitor within a certain time window (e.g., about 3 hours to 6 days after the radiation treatment).
BACKGROUNDGBM and brain metastases of lung ADC are highly lethal cancers containing abundant TAMs, and current immunotherapy such as anti-PD1 treatment is not effective for these tumors partially due to the blood-brain barrier (BBB) or blood-tumor barrier (BTB) issue and the insufficient infiltration of T cells into tumors. GBM and brain metastases of lung ADC are highly resistant to current therapies and often recurs rapidly after surgical resection and radio-chemotherapy. The majority of these brain tumors showed extremely poor or no response to current immunotherapy. Less than 7% of GBM patients showed response to current immune checkpoint inhibitors including anti-PD1 treatment (Filley et al., 2017). Brain metastases of lung ADC respond to current immunotherapy even more poorly, although tumor immunotherapy has been shown promising for 20-30% of other types of solid cancers including primary lung cancers (Menon et al., 2016). Thus, developing effective therapeutics to improve immunotherapy for GBM and brain metastases is urgently needed.
SUMMARYProvided herein are compositions, systems, kits, and methods for treating a subject with cancer by administering a BACE1 inhibitor, such as MK-8931. In particular embodiments, the subject is treated with radiation (e.g., low dose radiation) first, and then administered a BACE1 inhibitor within a certain time window (e.g., about 3 hours to 6 days after the radiation treatment).
In some embodiments, provided here are methods of treating a subject with cancer comprising: a) treating a subject having cancer with radiation, and b) administering a BACE1 inhibitor to the subject. In certain embodiments, provided herein are methods of treating a subject with cancer comprising: administering a BACE1 inhibitor from Table 1 to the subject or a shRNA, wherein the subject has cancer. In certain embodiments, provided herein are the same methods except an ERK inhibitor or a MEK inhibitor is used in place of a BACE1 inhibitor or in addition to a BACE1 inhibitor.
In particular embodiments, the administering comprises providing the BACE1 inhibitor to the subject in the form of oral pills that the patient takes themselves. In other embodiments, the administering comprises injecting the BACE1 inhibitor into the subject. In some embodiments, the methods further comprise: repeating the administering daily for at least one week or at least three weeks (e.g., at least 7 . . . 14 . . . 21 . . . 28 . . . 35 . . . or 100 days). In certain embodiments, the administering comprises administering (e.g., daily for at least three weeks) 0.05 mg per kg of the subject to 50 mg per kg of the subject (e.g., 0.05 . . . 1.0 . . . 10 . . . 30 . . . or 50 mg/kg), or administering a total dose (e.g., daily for at least three weeks) of 3-1000 mg (e.g., 3 . . . 100 . . . 400 . . . 800 . . . 1000 mg).
In particular embodiments, the treating with radiation occurs at least about 3 hours, or at least 12 hours, prior to the administering (e.g., at least 3 . . . 12 . . . 36 hours prior to the administering). In further embodiments, the administering occurs no later than 6 days after the treating with radiation (e.g., no later than 5 . . . 4 . . . or 3 days after the treating with radiation). In particular embodiments, the radiation is low-dose radiation. In some embodiments, the low-dose radiation provides between 0.1-10 Gy, or 1-5 Gy, of radiation to the subject (e.g., 0.1 . . . 0.9 . . . 2 . . . 3.5 . . . 5.5 . . . 7.5 . . . 8.3 . . . 10.0 Gy). In certain embodiments, rather than radiation treatment, or in addition thereto, the subject is treated to disrupt the blood-brain barrier or blood-tumor barrier in brain tumors or brain metastases of the subject.
In certain embodiments, the subject is a human. In other embodiments, the cancer is selected from the group consisting of: a brain cancer, glioblastoma multiforme, brain metastases, lung adenocarcinoma, liver cancer, and gastric cancer. In particular embodiments, the BACE1 inhibitor is selected from Table 1. In certain embodiments, the BACE1 inhibitor comprises MK-8931. In further embodiments, the methods further comprise: administering the subject an immune checkpoint inhibitor.
In particular embodiments, the cancer is selected from the group consisting of: glioblastoma, lung cancer, pancreatic cancer, breast cancer, myeloid cancers, lymphoid cancers (e.g., T-cell lymphoid cancers), small cell lung cancer, fibrosarcoma, myxosarcoma, liposarcoma, chondrosarcoma, osteogenic sarcoma, chordoma, angiosarcoma, endotheliosarcoma, lymphangiosarcoma, lymphangioendotheliosarcoma, synovioma, mesothelioma, Ewing's tumor, leiomyosarcoma, rhabdomyosarcoma, colon carcinoma, ovarian cancer, prostate cancer, squamous cell carcinoma, basal cell carcinoma, adenocarcinoma, sweat gland carcinoma, sebaceous gland carcinoma, papillary carcinoma, papillary adenocarcinomas, cystadenocarcinoma, medullary carcinoma, bronchogenic carcinoma, renal cell carcinoma, hepatoma, bile duct carcinoma, choriocarcinoma, seminoma, embryonal carcinoma, Wilms' tumor, cervical cancer, testicular tumor, lung carcinoma, small cell lung carcinoma, bladder carcinoma, epithelial carcinoma, glioma, astrocytoma, medulloblastoma, craniopharyngioma, ependymoma, pinealoma, hemangioblastoma, acoustic neuroma, oligodendroglioma, meningioma, melanoma, neuroblastoma, and retinoblastoma.
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Provided herein are compositions, systems, kits, and methods for treating a subject with cancer by administering a BACE1 inhibitor, such as MK-8931. In particular embodiments, the subject is treated with radiation (e.g., low dose radiation or regular dose radiation) first, and then administered a BACE1 inhibitor within a certain time window (e.g., about 3 hours to 6 days after the radiation treatment).
Macrophages derived from monocytes are highly plastic immune cells that can be polarized into M1 or M2 macrophages in response to various stimulations (Murray, 2017). M1 macrophages marked by expression of the major histocompatibility complex (MHC) II, inducible nitric oxide synthase (iNOS), and CD11c (Colegio et al., 2014; Deininger et al., 2000; Shi et al., 2017a; Zhou et al., 2015) display potent phagocytosis activity that can eliminate tumor cells via nitric oxide (NO) and TNF-α (Sica et al., 2008). In contrast, M2 macrophages expressing markers including CD163, arginase-1 (ARG1), and FIZZ1 (Colegio et al., 2014; Deininger et al., 2000; Komohara et al., 2008; Shi et al., 2017a; Zhou et al., 2015) can be promoted by Th2 cytokines including IL4, IL10, and IL13 or other factors secreted by cancer cells (Sica et al., 2008). The majority of TAMs in TME has been demonstrated to more closely resemble M2-polarized macrophages that suppress anti-tumor immune response and support malignant progression (Sica et al., 2008; Zhou and Bao, 2014a). Thus, while the present invention is not limited to any particular mechanism, and an understanding of the mechanism is not necessary to practice the invention, it is believed that therapeutics that can redirect M2 TAMs to M1 macrophages will not only mitigate the immune suppressive microenvironment but also promote the anti-tumor innate response to inhibit malignant growth. In order to develop effective therapeutics activating TAM phagocytosis to attack cancer cells, it is important to understand the molecular mechanisms underlying the polarization of M1 and M2 TAMs and identify molecular modulators that can reprogram M2 TAMs into M1 macrophages. In work conducted during development of embodiments herein, we used human iPS cell-derived macrophages to screen for small molecules that can promote macrophage phagocytosis against cancer cells. To this end, we identified MK-8931 as one of top drug candidates and thus determined its molecular target BACE1 (the 3-site amyloid precursor protein cleaving enzyme 1) as an important modulator in regulating the phenotype switch of M2/M1 macrophages. It was found that BACE1 inhibition by MK-8931 potently redirects M2 TAMs into M1 macrophages and promotes macrophage phagocytosis to suppress malignant growth of GBMs and brain metastases of lung ADC.
BACE1 is a transmembrane aspartyl protease that is responsible for the production of amyloid beta peptide (A) in brains of patients with Alzheimer's disease (AD) (Hussain et al., 1999; Sinha et al., 1999; Vassar et al., 1999; Yan et al., 1999). Since its discovery, BACE1 has been widely investigated as a therapeutic target for AD (Yan and Vassar, 2014b), and several BACE1 inhibitors have been developed and used in clinical trials for AD treatment (Panza et al., 2018; Yan and Vassar, 2014a). In work conducted during the development of embodiments herein, it was found that BACE1 is preferentially expressed by M2 TAMs and that the BACE1-mediated STAT3 activation is required for the polarization and maintenance of M2 TAMs. Functional inhibition of BACE1 by a specific inhibitor, MK-8931, effectively converted M2 TAMs into M1 macrophages to promote TAM phagocytosis against tumor cells. Importantly, as described in the Example below, it was demonstrated that BACE1 inhibition by MK-8931 treatment also suppressed tumor growth of brain metastases of lung ADC, indicating that pharmacological targeting of BACE1 can be used to reclaim the anti-tumor activity of TAMs for multiple malignant tumors containing the TAMs. Furthermore, it was demonstrated that low dose of radiation markedly enhanced infiltration of TMAs and synergized with MK-8931 treatment to suppress tumor growth. Thus, in certain embodiments, one could use radiation (e.g., low dose radiation) to induce infiltration of M2 TAMs into those tumors containing relatively less TAMs and then treat tumors with a BACE1 inhibitor (e.g., MK-8931) to activate TAM phagocytosis to improve the anti-tumor efficacy.
MK-8931, also known as Verubecestat, is a non-peptidic class of BACE1 inhibitor developed for potential AD treatment through fragment screening with further modifications (Scott et al., 2016). MK-8931 displays a specific inhibitory effect on BACE1 at nalo mole levels over other aspartic proteases. This drug has been shown to penetrate the BBB very well (Kennedy et al., 2016). MK-8931 is the first BACE1 inhibitor that has been processed to the phase 3 clinical trial for AD, and the clinical trial results indicated that MK-8931 is well-tolerated for patients (Egan et al., 2018; Egan et al., 2019). However, phase 3 clinical trials with MK-8931 were terminated due its ineffectiveness in controlling AD progression or improving life quality of AD patients. Although targeting BACE1 by MK-8931 is not effective for treating AD patients, work conducted during development of embodiments herein indicate that MK-8931 can be repurposed for cancer immunotherapy as the drug can effectively redirect M2 TAMs into M1 macrophages to attack cancer cells in tumors. Because current immune checkpoint inhibitors such as anti-PD1 antibody have very poor capacity to penetrate the BBB or BTB, such treatment could not result in significant outcome for GBM and brain metastases of malignant tumors. As MK-8931 displays excellent permeability to enter the BBB and BTB, it overcomes the disadvantages of current immunotherapy.
In certain embodiments, the BACE1 inhibitor employed herein is provided in Table 1.
In certain embodiments, the BACE1 inhibitor is any of the compounds in Hsiao et al., Bioorganic & Medicinal Chemistry Letters 29 (2019) 761-777, including any of compounds 1-104. Hsiao et al. is incorporated by reference in its entirety, and specifically for any of the compounds recited therein. In other embodiments, the BACE1 inhibitor is any of the compounds in Moussa-Pacha et al., Med Res Rev. 2019; 1-46, including any of the compounds in Table 2. Moussa-Pacha et al. is incorporated by reference in its entirety, and specifically for any of the compounds listed in Table 2.
In some embodiments, methods further comprise administering to the subject an immune checkpoint inhibitor. In some embodiments, the immune checkpoint inhibitor is a protein or polypeptide that specifically binds to an immune checkpoint protein. In some embodiments, the immune checkpoint protein is selected from the group consisting of CTLA4, PD-1, PD-L1, PD-L2, A2AR, B7-H3, B7-H4, BTLA, KIR, LAG3, TIM-3 or VISTA. In some embodiments, the polypeptide or protein is an antibody or antigen-binding fragment thereof. In some embodiments, the immune checkpoint inhibitor is an interfering nucleic acid molecule. In some embodiments, the interfering nucleic acid molecule is an siRNA molecule, an shRNA molecule or an antisense RNA molecule. In some embodiments, the immune checkpoint inhibitor is selected from the group consisting of nivolumab, pembrolizumab, pidilizumab, AMP-224, AMP-514, STI-A1110, TSR-042, RG-7446, BMS-936559, BMS-936558, MK-3475, CT O11, MPDL3280A, MEDI-4736, MSB-0020718C, AUR-012 and STI-A1010.
EXAMPLES Example 1 BACE1 Inhibition Promotes Macrophage Phagocytosis Against Cancer Cells to Suppress Malignant GrowthMost malignant tumors contain abundant tumor-associated macrophages (TAMs) that mainly promote tumor growth and therapeutic resistance. Reprograming these tumor-supportive TAMs (M2) into tumor-suppressive macrophages (M1) is important for immunotherapy. Here, we found that inhibition of the β-site amyloid precursor protein cleaving enzyme 1 (BACE1) effectively redirected M2 TAMs into M1 macrophages and potently promoted macrophage phagocytosis against cancer cells to inhibit malignant growth. BACE1 is preferentially expressed by M2 TAMs and required for M2 polarization. BACE1 inhibition by MK-8931 potently suppressed tumor growth and significantly extended the survival of animals bearing xenografts of glioblastoma or brain metastases of lung adenocarcinoma. Moreover, low dose of radiation markedly enhanced TAM infiltration and synergized with MK-8931 treatment to inhibit malignant progression. Mechanistically, BACE1 maintains M2 TAMs through STAT3 signaling.
Results
Identification of the BACE1 Inhibitor MK-8931 as a Potent Activator of Macrophage Phagocytosis Against Cancer Cells
To screen for potential small molecular modulators that can promote macrophage phagocytosis to eliminate cancer cells, we generated monocytes and macrophages from human iPS cells (iPSCs) expressing GFP according to the established protocols (Mia et al., 2014; Shi et al., 2017a; Yanagimachi et al., 2013) (
We initially screened two drug libraries and some known inhibitors that displayed low toxicity and excellent BBB permeability in phase 2/3 clinical trials for other diseases including AD. To this end, we obtained nine potential “hits” and identified seven BACE1 inhibitors including MK-8931 as the most promising drug candidates that can potently promote phagocytosis of macrophages against glioma cells and lung ADC cells. The nine hits identified in this screen include MK-8931, PF-06751979, AZD3839, CNP520, E2609, AZD3293, JNJ-54861911, MK-8353, AZD6244. The seven most promising identified are all BACE1 inhibitors. It is noted that MK-8353 is an ERK inhibitor, and AZD6244 is a MEK inhibitor.
The in vitro fluorescent screening assay showed that MK-8931 treatment augmented phagocytosis of the iPSC-derived macrophages against glioma cells and lung ADC cells (
BACE1 is Preferentially Expressed by M2 TAMs in GBM Tumors and Predicts Poor Prognosis
To investigate the potential role of BACE1 in regulating TAMs in GBM, we examined BACE1 expression in human GBM surgical specimens by double immunofluorescent staining, and found that BACE1 was mainly detected on a fraction of total TAMs expressing the macrophage marker IBA1 or CD11b (
To interrogate the clinical significance of BACE1 expression in M2 TAMs in GBM tumors, we analyzed the relationship between BACE1 expression and GBM patient survival in several GBM databases including the Cancer Genome Atlas (TCGA), Rembrandt, Gravendeel and LeeY, and found an inverse correlation between BACE1 expression and the patient survival in all GBM databases (
BACE1 is Required for Maintaining M2 Macrophage Polarization
To determine the functional significance of BACE1 preferential expression in M2 macrophages, we examined the effects of BACE1 disruption by shRNA on M2 macrophages derived from U937 monocytes. M2 macrophages were induced from the PMA-primed U973 cells (known as M0 macrophage) by the cytokines IL4, IL10 and TGFβ according to an established protocol (Mia et al., 2014; Shi et al., 2017a) (
BACE1 Inhibition by MK-8931 Redirects M2 TAMs into M1 Macrophages to Phagocytize Tumor Cells In Vivo
To evaluate the therapeutic impact of BACE1 inhibition on activating TAM phagocytosis for cancer treatment, we next examined the effect of MK-8931 treatment on TAMs in GBM tumors that contain abundant M2 TAMs (Shi et al., 2017a; Zhou et al., 2015). GBM xenografts were established by implantation of GSCs (T4121 or T387) through intracranial injection. The tumor-bearing mice were then treated with MK-8931 (30 mg/kg) or the vehicle control once daily by oral gavage for 2 weeks. Immunofluorescent analyses of the M1/M2 markers in the xenografts demonstrated that MK-8931 treatment markedly reduced M2 TAMs as marked by CD163+/IBA1+ or FIZZ1+/IBA1+ cells (
Targeting BACE1 by MK-8931 Potently Inhibited Tumor Growth and Extended Survival of Animals Bearing the GBM Xenografts
Given the phenotypic switch of TAMs (M2 to M1) and the enhanced macrophage phagocytosis induced by BACE1 inhibition via MK-8931 treatment, we next examined whether MK-8931 treatment in vivo could suppress tumor growth. To address this important point, we treated the mice bearing the GBM xenografts derived from the luciferase-expressing GSCs (T4121 or T387) with MK-8931 (30 mg/kg) or the control once daily through oral gavage and then monitored the tumor growth under IVIS as illustrated (
Low Dose of Radiation Enhanced TAM Infiltration and Effectively Synergized with MK-8931 Treatment to Inhibit Malignant Growth
To improve the efficacy of macrophage-based immunotherapy through BACE1 inhibition, we sought to find an effective way to enhance macrophage infiltration into tumors. We irradiated mouse brains bearing the GBM xenografts with low dose of IR (2×2 Gy) to allow more TAM infiltration and then treated mice with MK-8931 as illustrated (
BACE1 Maintains M2 TAMs Through STAT3 Activation
We next sought to understand the molecular mechanisms by which BACE1 maintains M2 TAM polarization. Because STAT3 and STAT6 have been shown to be the key transcriptional regulators in M2 macrophage polarization (Guerriero, 2018; Murray, 2017; Sica and Mantovani, 2012), we interrogated the potential role of STAT3 or STAT6 in the BACE1-mediated maintenance of M2 TAMs. Surprisingly, we found that the activating phosphorylation of STAT3 (pSTAT3-Y705) but not STAT6 (pSTAT6-Y641) was significantly down-regulated by BACE1 disruption with shBACE1 (
MK-8931 Treatment Potently Suppressed Malignant Growth of Brain Metastases of Lung Adenocarcinoma
As TAMs are commonly present in most types of malignant tumors (Mantovani et al., 2017), we next examined whether targeting BACE1 by MK-8931 could also effectively inhibit tumor growth of other lethal cancers. Because lung ADC is the most common type of lung cancer that accounts for the most cancer incidents and is the leading cause of cancer-related death worldwide (Bray et al., 2018; Fitzmaurice et al., 2018), and lung ADC often causes brain metastases that are highly lethal with limited treatment option (Sperduto et al., 2010), we examined whether MK-8931 treatment could suppress the tumor growth and malignant progression of brain metastases of lung ADC. We established intracranial xenografts of lung cancer by transplanting luciferase-expressing lung ADC cells (H1002, derived from brain metastases of human lung ADC) into NSG mice through intracranial injection, and then treated the tumor-bearing mice with MK-8931 as illustrated (
Macrophages are critical immune cells that play essential roles in tissue homeostasis and innate immunity. In response to varied stimulations or changes in tissue microenvironment, macrophages undergo specialized polarization to execute diverse functions (Murray, 2017). In malignant tumors, TAMs are recruited and educated by cancer cells in the tumor microenvironment. The majority of TAMs (M2) play supportive roles to promote tumor growth and malignant progression including cancer invasion, tumor metastasis, immune evasion, and therapeutic resistance (Qian and Pollard, 2010), although a small fraction of TAMs (M1) may have a tumor-suppressive role (Noy and Pollard, 2014; Zhou and Bao, 2014b). Thus, either targeting M2 TAMs to inhibit their tumor-supportive role or reprograming M2 TAMs into M1 macrophages to activate their phagocytosis against cancer cells is an attractive therapeutic approach. To make a smart use of the abundant M2 TAMs in malignant tumors for the macrophage-based immunotherapy, redirecting M2 TAMs into M1 macrophages to exert their anti-cancer capacity is a better therapeutic strategy. Although depleting TAMs by targeting the colony-stimulating factor 1 receptor (CSF-1R) showed inhibition on the tumor growth of GBM in animal models (Pyonteck et al., 2013), clinical trials with CSF-1R inhibitors failed to show a significant efficacy for treating GBM in human (Butowski et al., 2016). In addition, as CSF-1R is expressed by circulating monocytes and other normal cells, targeting CSF-1R showed serious toxic effects in the clinical trials (Papadopoulos et al., 2017), making the therapeutics targeting CSF-1R ineffective for clinical use (Gelderblom et al., 2018). This Example demonstrated that redirecting M2 TAMs into M1 macrophages by targeting BACE1 with its specific inhibitor MK-8931 potently promoted TAM phagocytosis against tumor cells and effectively inhibited tumor growth to extend the survival of animals bearing GBM xenografts or brain metastases of lung ADC. As BACE1 inhibition by MK-8931 has been demonstrated to be very safe in the clinical trials for AD treatment (Egan et al., 2018; Egan et al., 2019), and MK-8931 can penetrate the BBB or BTB very well (Kennedy et al., 2016), converting M2 TAMs into M1 macrophages by BACE1 inhibition with MK-8931 offers a macrophage-based new immunotherapy to overcome the shortcomings of targeting CSF-1R. Because BACE1 is preferentially expressed by the M2 TAMs and required for the maintenance of M2 TAMs, BACE1 represents an attractive therapeutic target for reprograming M2 TAMs into M1 macrophages to improve tumor immunotherapy for lethal cancers including GBM and brain metastases of lung cancer (
BACE1 is a type I transmembrane β-secretase that can cleave amyloid precursor protein to cause accumulation of Aβ production in brains of AD patients (Hussain et al., 1999; Sinha et al., 1999; Vassar et al., 1999; Yan et al., 1999). Early studies showed that BACE1 deficiency is well-tolerated in the knockout mice without obvious effects on development, behavior, and fertility (Yan, 2017), implicating that targeting BACE1 should not result in obvious side effects. This Example demonstrated that BACE1 plays a critical role in the polarization and maintenance of M2 TAMs in tumors. BACE1 inhibition potently reprograms M2 TAMs into M1 macrophages to promote TAM phagocytosis against cancer cells in vivo. Interestingly, microglia in BACE1-deficient mice also showed an enhanced phagocytosis toward cellular debris after nerve damage (Farah et al., 2011; Liu et al., 2016), but the essential role of BACE1 in M2 macrophage polarization in tumors has not been reported. In this Example, we identified BACE1 as an important regulator that affects M2/M1 phenotype switch in tumors. Importantly, BACE1 inhibition did not cause cell death of M2 TAMs but redirected M2 TAMs into M1 macrophages that display potent phagocytic activity to attack cancer cells in tumors, making therapeutic targeting of BACE1 more attractive for tumor immunotherapy. As several BACE1 selective inhibitors have been developed for AD in clinical trials and are well-tolerated in patients (Cebers et al., 2017; Egan et al., 2018; Kennedy et al., 2016; Neumann et al., 2018; Panza et al., 2018; Scott et al., 2016; Yan and Vassar, 2014a), repurposing these BACE1 inhibitors for the macrophage-based tumor immunotherapy will provide important therapy for cancer.
The molecular mechanisms underlying the polarization and maintenance of M1 and M2 macrophages were poorly understood. In this Example, we interrogated the molecular signaling that regulates the polarization of M2/M1 TAMs, and found that BACE1 disruption or inhibition attenuates the STAT3 activating phosphorylation in M2 macrophages and promotes the M2 to M1 transition of TAMs. Moreover, ectopic expression of a constitutively activated STAT3 (STAT3-C) rescued the effect caused by BACE1 disruption or inhibition, indicating that BACE1-mediated STAT3 activation is required for the polarization and maintenance of M2 TAMs. Our in vivo study further demonstrated that inhibiting BACE1 by MK-8931 treatment suppressed STAT3 activation in TAMs, resulting in reduction of M2 TAMs and increase of M1 TAMs as well as enhanced macrophage phagocytosis to effectively inhibit tumor growth.
STAT3 is a critical transcription factor that plays multiple roles in tumor development and malignant progression (Yu et al., 2009). Previous studies demonstrated that STAT3 hyper-activation mediated by the bone marrow X-linked kinase (BMX) is required for maintaining the self-renewal and tumorigenic potential of GSCs in GBM (Guryanova et al., 2011; Shi et al., 2018). In this Example, we found that STAT3 activation in M2 TAMs is regulated by BACE1. Previous studies uncovered that GSCs secreted Periostin to recruit monocyte-derived TAMs into GBM tumors (Zhou et al., 2015). In turn, TAMs (M2) support the maintenance of GSCs through PTN-PTPRZ1 signaling in GBM (Shi et al., 2017a). Because GSCs play crucial roles in tumor growth and malignant progression including invasion, angiogenesis, pericyte generation, BTB formation, and therapeutic resistance, the indirect reduction of GSCs caused by the decreased M2 TAMs induced by BACE1 inhibition with MK-8931 treatment may also partially contribute to the suppression of tumor growth in vivo.
Our preclinical studies demonstrated that pharmacological inhibition of BACE1 by MK-8931 potently redirected M2 TAMs into M1 macrophages to promote their phagocytosis against cancer cells in GBM tumors and brain metastases of lung ADC. Infiltrated TAMs are usually educated by cancer cells to become “friends” of tumors to support malignant progression, but targeting BACE1 by MK8931 turns these TAMs into “enemies” of cancer cells to suppress tumor growth. MK-8931 was initially developed as BACE1 inhibitor for AD treatment (Scott et al., 2016). Clinical trials (Phase I to Phase III) have demonstrated MK-8931 was well-tolerated in human and showed little toxic effect during the trials (Egan et al., 2018; Egan et al., 2019). Importantly, MK-8931 has been shown to penetrate the BBB very well (Kennedy et al., 2016). Our preclinical results demonstrated that MK-8931 treatment potently inhibited tumor grow of GBM tumors and brain metastases of lung ADC, supporting that MK-8931 has good BBB or BTB permeability to enter brain tumors. Thus, MK-8931 can be repurposed to be a potent drug for promoting TAM phagocytosis against tumor cells to improve immunotherapy for many types of malignant tumors including GBM and brain metastases of other cancers.
To enhance the therapeutic efficacy of MK-8931, we found that low dose of irradiation (IR) remarkably augmented TAM infiltration and effectively synergized with MK-8931. Although IR could eliminate a majority of cancer cells in some types of tumors, IR often triggers inflammation response in tumor and induces therapeutic resistance (Barker et al., 2015; Ruffell and Coussens, 2015). Thus, IR remodels the tumor microenvironment and changes the population of infiltrating immune cells to mediate resistance (Barker et al., 2015). This Example demonstrated that low dose of IR markedly enhanced TAM infiltration into GBM tumors. Surprisingly, the increased TAMs induced by low dose of IR in tumors were mainly M2 TAMs, although a previous in vitro study showed that IR can induce polarization of human and murine monocytes toward M1 macrophages (Genard et al., 2017). It is possible that IR affects macrophages in vitro and in vivo in different manner and the low and high doses of IR differentially impact macrophage polarization. Interestingly, another study showed that IR could induce BACE1 expression (Lee et al., 2012), which should promote the maintenance of M2 TAMs. Our in vivo studies clearly demonstrated low dose of IR dramatically increased M2 TAM density in the tumor. Although treatment with low dose of IR alone did not significantly impact tumor growth, it provides a powerful tool to enhance TAM infiltration into tumors, which allows MK-8931 treatment to redirect the increased M2 TAMs into more M1 macrophages to better suppress tumor growth. Thus, MK-8931 treatment overcomes the drawback of IR that may increase tumor-supportive M2 TAMs. The combination of low dose of IR with MK-8931 treatment clearly resulted in enhanced anti-tumor efficacy. This therapeutic strategy is particularly important for those solid tumors containing relatively less TAMs. Most malignant tumors contain abundant TAMs and the treatment with MK-8931 alone should effectively promote phagocytosis of enough TAMs to eliminate cancer cells, but certain types of tumors in some patients may have less TAMs. In either situation, the combination of MK-8931 treatment with low dose of IR should enhance the therapeutic efficacy. Because some tumors may not contain enough infiltrating T cells to facilitate the current immunotherapy with immune checkpoint inhibitors such as anti-PD1 antibody, the combination of low dose of IR with MK-8931 treatment should provide an alternative effective therapeutics to overcome the poor response of some malignant tumors to current immunotherapy.
Tumor immunotherapy has shown promising, but the majority of solid tumors respond very poorly to current immune checkpoint blockage and CAR-T therapy partially due to the insufficient T cell infiltration into tumors and poor delivery of the checkpoint inhibitors such as anti-PD1 antibody to tumor tissues. As most malignant tumors contain abundant TAMs, and we have identified an effective way using low dose of radiation to enhance macrophage infiltration into tumors, this macrophage-based tumor immunotherapy using small molecular modulators such as MK-8931 may have several advantages. (1) This new immunotherapy reprograms M2 TAMs into tumor-suppressive M1 macrophages, it not only reduces tumor-supportive TAMs but also promotes macrophage phagocytosis against cancer cells. The double ‘hits” of this therapy effectively suppress tumor growth and malignant progression. (2) As current tumor immunotherapy such as CAR-T and anti-PD1 is too expensive for most patients, using the small molecule modulators to facilitate the immunotherapy will provide a much more economic but effective approach to improve tumor control and survival of cancer patients. (3) Because BACE1 inhibition by MK-8931 potently redirects the tumor-supportive M2 TAMs into tumor-suppressive macrophages, this therapy should effectively re-modulate the tumor immune microenvironment to overcome the resistance to other therapies. (4) As low dose of radiation markedly enhances TAM infiltration and synergizes with BACE1 inhibition by MK-8931, the combined therapy can be broadly used for the macrophage-based immunotherapy for most malignant tumors containing abundant or less TAMs. (5) Because all BACE1 inhibitors including MK-9831 developed for AD clinical trials display great ability to penetrate the BBB or BTB, this macrophage-based immunotherapy activated by BACE1 inhibitors will overcome the BBB or BTB issue that negatively impacts other therapies including anti-PD1 treatment in brain tumors including brain metastases that lack effective therapeutic option. (6) As BACE1 inhibition by MK-8931, AZD3293, E2609, or CNP520 has been shown to be very safe for patients in the AD clinical trials (Cebers et al., 2017; Egan et al., 2018; Egan et al., 2019; Eketjall et al., 2016; Kennedy et al., 2016; Lopez Lopez et al., 2017; Neumann et al., 2018; Scott et al., 2016), and we have demonstrated that targeting BACE1 by these inhibitors promotes macrophage phagocytosis against cancer cells, repurposing these BACE1 inhibitors for the macrophage-based tumor immunotherapy should be useful.
Methods
Experimental Model and Subject Details
Cells
Cells were cultured in a humidified incubator at 37° C. with 5% CO2 and atmospheric oxygen. All cells used in this study were consistently confirmed to be free from Mycoplasma by using a MycoFluor™ Mycoplasma Detection Kit (ThermoFisher, M7006). 293FT cells were from Clontech (632180) and maintained in the DMEM medium supplemented with 10% (v/v) fetal bovine serum (FBS, ThermoFisher, 10437-036). Human iPSCs were from ALSTEM (iPS11) and grown in the mTeSR1 medium (StemCell Technologies, 85850). Human iPSC-derived monocytes and macrophages were maintained in the X-VIVO™ 15 medium (Lonza, 04-418Q). Human U937 cells were from ATCC (CRL-1593.2™) and maintained in the RPMI 1640 medium with 10% (v/v) FBS. Bone-marrow derived macrophages (BMDMs) were generated in our own lab with an established protocol (Weischenfeldt and Porse, 2008) and cultured in the RPMI 1640 medium with 10% (v/v) FBS. Human GSCs (T4121 and T387) were derived from primary GBMs (Cheng et al., 2013; Fang et al., 2017; Shi et al., 2018; Wang et al., 2018; Xie et al., 2018) and maintained in the Neurobasal medium (Invitrogen, 12349015) supplemented with B-27 (Invitrogen, 12587010), glutamine (2 mM, ThermoFisher, 35050061), non-essential amino acids (ThermoFisher, 11140050), sodium pyruvate (1 mM, ThermoFisher, 11360070), epidermal growth factor (EGF, 20 ng/mL, Goldbio, 1150-04-100), and basic fibroblast growth factor (bFGF, 20 ng/mL, R&D Systems, 4114-TC-01M). Human lung cancer cells (H1002) were derived from brain metastases of lung adenocarcinoma (ADC) and maintained in the stem cell medium. Unless otherwise indicated, the Gibco® antibiotic-antimycotic (ThermoFisher, 15240062) was used to prevent contamination in all the media.
Human Surgical Specimens
Surgical specimens of human GBMs and brain metastases of lung ADC were collected from the Brain Tumor and Neuro-Oncology Center Cleveland Clinic according to an approved protocol by the Cleveland Clinic Institutional Review Broad. Human GBM surgical specimens were used for isolation of GSCs and immunofluorescent analyses. Human lung ADC brain metastases were used for isolation of lung cancer cells for establishing the intracranial xenografts for the study.
Mice
All animal experiments were performed in accordance with protocols approved by the IACUC at the Cleveland Clinic Lerner Research Institute. NSG mice (NOD.Cg-PrkdcscidIl2rgtm1Wj1/SzJ) were randomly selected and used for establishing GBM xenografts or intracranial xenografts of lung ADC for the in vivo studies. Mice were maintained in a 14 hours light/10 hours dark cycle, and provided with sterilized water and food ad libitum at the Biological Resource Unit of the Cleveland Clinic Lerner Research Institute.
Chemicals and Reagents
MK-8931 was purchased from Selleckchem (S8173) and Medkoo (331024), dissolved at a concentration of 100 mg/mL in dimethyl sulphoxide (DMSO, Santa Cruz, sc-358801) as a stock solution, and stored at −20° C. until use. D-Luciferin was bought from GoldBio (LUCK-10G), prepared at a concentration of 15 mg/mL in sterile water as a stock solution, and stored at −20° C. until use. Etoposide (sc-3512B) was from Santa Cruz, prepared at a concentration of 1 mM in DSMO, stored at −20° C. until use. 32% Paraformaldehyde (PFA, 15714) was from Electron Microscopy Sciences and diluted to 4% with PBS before use. Protease (04693159001) and phosphatase inhibitors (04906837001) tablets were from Roche. Recombinant Human SCF (300-07), VEGF (100-20), IL4 (200-04), IL10 (200-10), and TGFβ (200-21) were from Peprotech. Recombinant Human M-CSF (574806) and IL3 (578006) were from Biolegend. Recombinant Human bFGF was from R&D Systems (4114-TC-01M). Recombinant Human EGF was from GoldBio (1150-04-100). With the manufacture's instruction, all the recombinant proteins were prepared at a 1,000× concentration as a stock solution and stored at −80° C. until use. The other chemicals and reagents otherwise indicated were purchased from sigma-Aldrich.
Methods Details
Derivation of Monocytes and Macrophages from Human iPS Cells (iPSCs)
Human iPSC-derived monocytes and macrophages were prepared in accordance with an established protocol (Mia et al., 2014; Shi et al., 2017a; van Wilgenburg et al., 2013). To generate GFP+ iPSCs, human iPSCs were seeded in a 10-cm tissue culture dish and transduced with GFP through lentiviral infection for 12 hours. Two days post infection, GFP+ iPSCs were selected and maintained in the mTeSR1 medium (Lonza) for the differentiation experiment. To induce the formation of the embryoid bodies (EBs), GFP+ iPSCs were seeded on an ultra-low attachment plate (Costar, 7007) in 100 μL of the mTeSR™1 medium supplemented with BMP4 (50 ng/mL, Abcam, ab87063), SCF (20 ng/mL, Peprotech, 300-07), Y27632 (50 μM, SellckChem, S1049), and VEGF (20 ng/mL, Peprotech, 100-20). The 96-well ultra-low attachment plate was centrifuged at 800 rpm for three minutes and the plate was placed into the incubator and left for four days. At day 2, 50 μL of culture medium in the well was aspirated and replaced by 50 μL of fresh mTeSR™1 medium containing the above inducers. For monocyte differentiation, about ten EBs were transferred to each well of a six-well tissue culture plate and cultured in the X-VIVO™ 15 medium (Lonza, 04-418Q) supplemented with IL3 (25 ng/mL, Biolegend, 578006), M-CSF (100 ng/mL, Biolegend, 574806), glutamine (2 mM, ThermoFisher, 35050061), and β-mercaptoethanol (0.055 M, ThermoFisher, 21985023) for two weeks. The medium was changed every 5 days. Once monocytes were visible in the supernatant of the cultures, non-adherent monocytes were harvested. For macrophage differentiation, the iPSC-derived monocytes (1.5×105) were plated on each well of 6-well plates and cultured in the X-VIVO™ 15 medium with M-CSF (100 ng/mL, Biolegend, 574806) for six days. For M2 macrophages differentiation, the iPSC-derived monocytes were seeded on each well of 6-well plates and primed by treatment with phorbol 12-myristate 13-acetate (PMA, 5 nM) for two days to produce the M0 macrophage. The M0 macrophages were further treated with IL4 (20 ng/mL, Peprotech, 200-04), IL10 (20 ng/mL, Peprotech, 200-10), and TGFβ (20 ng/mL, Peprotech, 200-21) for three days to generate the M2 macrophages.
Preparation of Bone Marrow-Derived Monocytes (BMDMs)
BMDMs were isolated and cultured according to an established protocol (Weischenfeldt and Porse, 2008). In brief, mouse bone marrow cells were collected by flushing the femurs and tibias with sterile PBS and then treated by red blood cell lysis buffer to remove red blood cells. The cells were re-suspended and cultured in the RPMI 1640 medium with 10% FBS and M-CSF (100 ng/mL) for seven days to differentiate into BMDMs.
Screening for Potential Drugs to Activate Macrophage Phagocytosis
To screen for potential small molecules activating phagocytosis of iPSC-derived M2 macrophages against human cancer cells, GFP+ iPSC-derived M2 macrophages (5×104 cells) were seeded in each well of 24-well plates and treated by small molecules for two days. After washing, the cells were maintained in the RPMI 1640 medium for two hours. Next, tdTomato-expressing glioma cells (T4121) or lung ADC cancer cells (2×105) were added to each well and co-incubated with the M2 macrophages in the RPMI 1640 medium with 10% FBS for another two hours. After the co-incubation, co-cultures were washed three times with the warm RPMI 1640 medium to remove free cancer cells and images were captured with a fluorescent microscope. The phagocytosis was measured as the number of inclusion bodies of cancer cells (in red) within macrophages (in green).
To detect the MK-8931-activated phagocytosis of bone marrow-derived macrophages (BMDMs) against human cancer cells, BMDMs were pre-stained by the CellTracker™ Green CMFDA Dye (1 μM, ThermoFisher, C2925). BMDMs (5×104 cells) were seeded in each well of a 24-well plate and treated by DMSO (Control) or MK-8931 (50 μg/mL) for two days. After washing, the BMDMs were maintained in the RPMI 1640 medium for two hours. Next, tdTomato-expressing T4121 GSCs (2×105 cells) were added to each well and co-incubated with BMDMs in the RPMI 1640 medium with 10% FBS for another two hours. After co-incubation, the co-cultures were extensively washed several times with the warm RPMI 1640 medium to remove free cancer cells and the images were captured with a fluorescent microscope.
Plasmids for Overexpression or Knockdown
To create pCDH-tdTomato vector, the full-length tdTomato was amplified from the pCDH-EF1-Luc2-P2A-tdTomato (Addgene, 72486) vector with the following primers: Forward: 5′-GCT AGC CCA ATC ATT TAA ATA TAA CTT-3′ (SEQ ID NO:5), Reverse: 5′-GCG GCC GCT TAC TTG TAC AGC TCG TCC ATG C-3′ (SEQ ID NO:6), and then cloned into the pCDH-CMV-MCS-EF1α-Neo vector at Nhe1 and Not1 sites. The sequence of inserted tdTomato was confirmed by DNA sequencing. The constitutively active STAT3 (STAT3-C-Flag) and pCDH-luciferase constructs were generated in our own lab (Guryanova et al., 2011; Zhou et al., 2015). The shRNAs against BACE1 (shBACE1) or non-targeting sequence (NT) were purchased from Sigma-Aldrich. The lentivirus packaging vectors (ps-PAX2 and pCI-VSVS) were from Addgene.
Isolation of Lung Cancer Cells from Brain Metastases of Lung ADC
Lung cancer cells were isolated from brain metastases of human lung ADC by using the Papain Dissociation System (Worthington Biochemical, LK003150) according to the manufacturer's instructions. Briefly, the brain metastatic tumor of lung ADC was cut into tiny chunks and gently rinsed with the iced Sterile Earle's Balanced Salt Solution (EBSS) medium. After removing the necrotic tissues and blood, the chunks were further minced into slurry and then treated by papain in the incubator to dissociate single lung cancer cells. The isolated lung cancer cells were maintained in the stem cell medium and used for establishing the patient-derived xenografts (PDXs). The lung cancer cells were further isolated from the xenografts by using the Papain Dissociation System (Worthington Biochemical). To avoid any mouse cell contamination, the isolated cells from the xenografts were subjected to a Mouse Cell Depletion Kit (Miltenyi Biotec, 130-104-694). The isolated lung cancer cells from a PDX line (H1002) were maintained in the stem cell medium and used for experiments in this study.
Production of Lentiviruses
Lentiviruses for expression of shRNAs (shBACE1) or overexpression of an ectopic protein (STAT3-C) were produced in 293FT cells and prepared as previously described (Fang et al., 2017; Shi et al., 2018; Shi et al., 2017a; Shi et al., 2017b; Zhou et al., 2017). Briefly, 293FT cells (Clontech, 632180) were co-transduced with targeting plasmids and packaging vectors pCI-VSVG (Addgene, 1733) and ps-PAX2 (Addgene, 12260) by using calcium phosphate. Four days after transfection, the supernatants were harvested and virus titer was determined as described previously (Guryanova et al., 2011; Li et al., 2009). For infection, cells were treated by lentivirus at a multiplicity of infection (MOI) of 1.
Generation of Stable Cell Lines
For the generation of the tdTomato-expressing stable glioma cells, GSCs (T4121) were transduced with tdTomato through lentiviral infection for 12 hours. Two days post infection, cells were treated with neomycin (500 μg/mL, Santa Cruz, sc-29065A) for seven days to select stable clones. The expression of tdTomato was confirmed under a fluorescence microscopy. To generate the luciferase-expressing stable glioma cells, GSCs (T4121 or T387) were transduced with firefly luciferase through lentiviral infection for 12 hours. Two days post infection, cells were treated with puromycin (2 μg/mL, Fisher Scientific, BP2956100) for seven days to select stable clones. The luciferase activity was confirmed by the Luciferase Assay System (Promega, E1500).
To establish the stable U937 cells expressing shBACE1 or shNT, U937 cells were transduced with shBACE1 or shNT expression through lentiviral infection. Two days post infection, cells were treated with puromycin (2 μg/mL) for seven days to select stable clones. Immunoblot was used to test the knockdown efficacy of BACE1 in the U937 stable cells.
Derivation of M2 Macrophages from U937 Cells
The U937-derived M2 macrophages were prepared according to an established protocol (Mia et al., 2014; Shi et al., 2017a). In brief, U937 cells grown in a 10-cm tissue culture dish were primed by PMA (5 nM) for two days to produce M0 macrophages. Then the M0 macrophages were further induced by IL4 (20 ng/mL, Peprotech, 200-04), IL10 (20 ng/mL, Peprotech, 200-10), and TGFβ (20 ng/mL, Peprotech, 200-21) for three days to generate M2 macrophages.
RNA Isolation and RT-PCR
Total RNA was isolated from cells by using the PureLink™ RNA Kit (ThermoFisher, 12183020) and reversely transcribed into cDNA with M-MLV reverse transcriptase (Promega, PR-M1701). Real-time PCR (qPCR) was performed on an ABI 7500 Real-Time PCR System (Applied Biosystems) using the SYBR-green qPCR Kit (Alkali Scientific, QS2050). Expression values were normalized to GAPDH. Gene-specific primers were as follows: BACE1 (forward): 5′-GCA GGG CTA CTA CGT GGA GA-3′ (SEQ ID NO:1), BACE1 (reverse): 5′-GTA TCC ACC AGG ATG TTG AGC-3′; GAPDH (forward; SEQ ID NO:2): 5′-AAG GTG AAG GTC GGA GTC AA C-3′, GAPDH (reverse; SEQ ID NO:3) 5′-GGG GTC ATT GAT GGC AAC AAT A-3′ (SEQ ID NO:4).
Establishment of Intracranial Xenografts of GBM or Lung ADC and Drug Treatment
To establish xenografts for in vivo studies, intracranial transplantation of glioma or lung cancer cells into brains of NSG mice were performed as described previously (Bao et al., 2006a; Fang et al., 2014; Fang et al., 2017; Shi et al., 2017a; Shi et al., 2017b; Zhou et al., 2015). In brief, GSCs (T4121 and T387) or lung ADC cells (H1002) expressing luciferase were injected into the right cerebral cortex at a depth of 3.5 mm. Seven days after the implantation, IVIS was performed twice per week to monitor the tumor growth under the Spectrum CT Imaging System (PerkinElmer) before and after treatment. Stock solution of MK-8931 at 100 mg/mL in DMSO was diluted in the 0.5% (w/v) methylcellulose (Sigma-Aldrich, M0512) to the concentration of 6 mg/mL as reported (Kennedy et al., 2016). The mice bearing the xenografts were treated with MK-8931 (30 mg/kg) or the control (DMSO) once daily by oral gavage for two weeks or until the humane endpoint. Mouse brains bearing the tumors were collected for immunofluorescent, histochemical and histological analyses. To collect mouse brain bearing the tumors, cardiac perfusion with PBS and the following 4% PFA (Electron Microscopy Sciences, 15714) was performed.
Irradiation on Intracranial Xenografts
Irradiation (IR) was performed with the Pantek X-ray irradiator (once per week) at low dose (2 Gy). To protect the mice and limit the side effect of irradiation, anesthetized mice were covered by a lead plate and only the tumor implantation sites were exposed to the fractioned radiation. Mice were sacrificed at the indicated time points or upon the appearance of the neurological signs. Mouse brains bearing the tumors were collected for further analyses through cardiac perfusion with PBS and the following 4% PFA (Electron Microscopy Sciences, 15714). Only animals with accidental death (for example, due to infection or intracranial injection) were excluded from the data analysis.
Immunofluorescent Analysis
Immunofluorescence staining of tumor tissues or cells were performed as described in our previous publications (Bao et al., 2006a; Cheng et al., 2013; Fang et al., 2017; Shi et al., 2017a; Zhou et al., 2015). In brief, tumor sections or cells were fixed with 4% PFA for ten minutes, washed three times with cold PBS for five minutes each, permeabilized by 0.5% (v/v) triton X-100 (Bio-Rad, 1610407) for ten minutes, and blocked with 3% (w/v) BSA (Sigma-Aldrich, A7906) in PBS for one hour at room temperature. For Ki67 and pSTAT3 staining, antigen retrieval was performed by incubating the sections in boiled antigen retrieval buffer (Vector Laboratories, H-3300) for 15 minutes before permeabilization. Primary antibodies were added to the sections or cells and incubated overnight at 4° C. Primary antibodies used for immunofluorescence in this study were diluted as described below: anti-BACE1 (Abcam, ab183612, 1:50; Thermo Fisher Scientific, MA1-177, 1:50), anti-IBA1 (Abcam, ab5076, 1:200; Wako chemicals, 019-19741, 1:200), anti-CD11b (Bio-Rad, MCA711GT, 1:100), anti-FIZZ1 (Abcam, ab39626, 1:100), anti-CD163 (Santa Cruz, sc-33560 and sc-33715, 1:100), anti-ARG1 (BD Biosciences, 610708, 1:300), anti-HLA-DR (Biolegend, 307602, 1:100), anti-CD11c (BD Pharmingen, 558079, 1:100), anti-TRA-1-85 (RD System, MAB3195, 1:300), anti-CD31 (Dako, M082301, 1:100), anti-cleaved caspase 3 (Cell signaling, 9661, 1:100), anti-GLUT1 (ThermoFisher, PA1-37782, 1:200), anti-Ki67 (Abcam, ab15580, 1:100), anti-SOX2 (Bethyl laboratory, A301-739A, 1:200), and anti-pSTAT3 (Tyr705) (Cell signaling, 9131, 1:100). After the incubation of the primary antibodies, the sections or cells were washed three times with cold PBS for five minutes each and then incubated with the secondary antibodies for one hour at room temperature. The secondary antibodies used in this Example included Alexa Fluor® 488 Donkey Anti-Mouse IgG (Invitrogen, A-21202, 1:200), Alexa Fluor® 568 Donkey Anti-Mouse IgG (Invitrogen, A-10037, 1:200), Alexa Fluor® 488 Donkey Anti-Rabbit IgG (Invitrogen, A-21206, 1:200), Alexa Fluor® 568 Donkey Anti-Rabbit IgG (Invitrogen, A-10042, 1:200), Alexa Fluor® 488 Donkey Anti-Goat IgG (Invitrogen, A-11055, 1:200), Alexa Fluor® 568 Donkey Anti-Goat IgG (Invitrogen, A-11057, 1:200), Alexa Fluor® 594 Donkey Anti-rat IgG (Invitrogen, A-21209, 1:200), Alexa Fluor® 568 Goat Anti-Armenian Hamster (Abcam, ab175716, 1:200), and Alexa Fluor® 488 Goat Anti-Rabbit (Invitrogen, A-11008, 1:200). After washing three times with cold PBS for five minutes each, the sections or cells were counterstained by DAPI (Cell Signaling, 4083, 1:5000) and sealed with mounting medium (Sigma-Aldrich, F4680). Finally, images were captured by a fluorescence microscopy (Leica DM4000) and further analyzed with ImageJ software.
Immunoblot Analysis
Immunoblot analysis was performed as previously described (Bao et al., 2006a; Cheng et al., 2013; Fang et al., 2014; Fang et al., 2017; Shi et al., 2017a; Shi et al., 2017b; Zhou et al., 2015). In brief, cells were lysed with the RIPA buffer [50 mM TrisHCl (pH7.4), 150 mM NaCl, 2 mM EDTA, 1% (v/v) NP-40, 0.1% (w/v) SDS, protease inhibitor (one tablet per 10 mL RIPA buffer, Roche)] for 20 minutes on ice. For the blots of phosphorylated protein, phosphatase inhibitor (one tablet per 10 mL RIPA buffer, Roche) will be used. The lysates were collected and subjected to SDS-PAGE and blotted onto the PVDF membranes (ASI, XR730). After blockade with 5% (w/v) non-fat milk (RPI, M17200) in TBST, the membranes were incubated with primary antibodies overnight at 4° C. After the incubation of the first antibodies, the membranes were washed three times with TBST for ten minutes each. Then, the membranes were incubated with the second HRP-linked antibodies in the 5% milk for one hour at room temperature. The second HRP-linked antibodies were anti-mouse IgG (Cell signaling, 7076, 1:5000), anti-rabbit IgG (Cell signaling, 7074, 1:5000), and anti-goat IgG (Santa Cruz, sc-2354, 1:5000). After washing three times with TBST for ten minutes each, signals on the membranes were developed in the ECL HRP substrates (Advansta, K-12045) and images were acquired and analyzed by the Image Lab software (Bio-Rad).
Immunohistochemistry (IHC) Analysis
IHC staining was performed by using the Dako REAL EnVision Detection System (Dako) as reported in our previous study (Zhou et al., 2017). In brief, frozen tumor or xenograft sections were fixed with 4% PFA for 10 minutes and then washed three times with cold PBS for five minutes each. The sections were incubated by 0.5% (v/v) H2O2 (Sigma-Aldrich, H1009) for ten minutes and washed three times with cold PBS for five minutes each. Antigen retrieval was performed by incubating the sections in the boiled antigen unmasking solution (Vector Laboratories) for 15 minutes. After cooling down, the sections were washed three times with cold PBS for five minutes each and blockade by 10% (v/v) serum at room temperature for one hour. After blockade, the sections were incubated with first antibodies overnight at 4° C. The primary antibodies for IHC in this study were anti-TGFβ (R&D Systems, MAB1835, 1:100), TNFα (Abcam, ab6671, 1:300), IL10 (R&D Systems, AF-519, 1:100), and IL1β (R&D Systems, AF-401, 1:100). After washing three times with cold PBS for five minutes each, the anti-goat IgG (1:1000, Vector Laboratories, BA-9500), anti-mouse IgG (1:1000, Vector Laboratories, BA-9200), anti-rabbit IgG (1:1000, Vector Laboratories, BA-1000) secondary antibodies were added to sections and incubated at room temperature for one hour. After washing three times with cold PBS five minutes each, DAB solution (Vector Laboratories) was added to the sections. When optical signal appeared, DAB staining was terminated by placing sides into a running tap water. After counterstaining with hematoxylin (Fisher Scientific, 22-220-102) and dehydration, the sections were mounted with coverslips. The images were captured using a Leica DM4000 Upright Microscope. To evaluate the expression for those cytokines, IHC images were processed with the ImageJ software and relative intensity of each image was calculated with an established method (Jensen, 2013).
Cell Viability Assay
Cell viability assay was performed by using a Cell Titer-Glo Luminescent Cell Viability Assay Kit according to the manufacturer's instruction (Promega, G7571). For this assay, 1,000 cells were seeded on one well of a 96-well plate in 100 μL of stem cell medium. The following day, MK-8931 (10 and 50 μg/mL) or DMSO (control) was added to cells. At Day 7, 50 μL of the Cell-Titer Glo reagent was added to each well and incubated for 15 minutes. Plate was loaded on the VICTOR Multilabel Plate Reader (PerkinElmer) and the readout were recorded and analyzed. All data were normalized to control and presented as mean±SEM.
Tumorsphere Formation Assay
Tumorsphere formation assay was performed as described in our previous study (Shi et al., 2018). Glioma cells (1000 cells) were plated on the one well of a 96-well plate and maintained in the stem cell medium. The following day, MK-8931 (50 μg/mL) or DMSO was added to cells and incubated for four days. At Day 5, the images of tumor-sphere were captured by EVOS FL microscope (AMG). The sizes and numbers of the tumor-sphere in the control and MK-8931 groups were furthered analyzed with ImageJ.
Statistical Analysis
All bar graphs represent mean±SEM unless otherwise indicated. For the survival analysis and correlation between gene expressions in GBM patients, the data were provide by TCGA and downloaded from GlioVis. Bivariate correlation analysis was performed to assess the correlation of two variables in GBM patients. For the survival analysis of GBM patients, the patients were divided into Bace1high and Bace1low groups with GlioVis (http://gliovis.bioinfo.cnio.es/) and Kaplan-Meier survival curves were generated. The log-rank survival analysis was performed with GraphPad Prism 5 software to compare significance among different groups. All quantitative data presented were mean±SEM from at least 3 repeats or samples per data point. Experimental details such as number of animals or cells and experimental replication were provided in the figure legends. No statistical method was used to predetermine samples size. The researchers were not blinded. Data inclusion/exclusion criteria was not applied in this study. Significant differences were determined between two groups using the Student's t test or among multiple groups using one-way ANOVA and statistical significance was set at p<0.05.
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All publications and patents mentioned in the specification and/or listed below are herein incorporated by reference. Various modifications and variations of the described method and system of the invention will be apparent to those skilled in the art without departing from the scope and spirit of the invention. Although the invention has been described in connection with specific embodiments, it should be understood that the invention as claimed should not be unduly limited to such specific embodiments. Indeed, various modifications of the described modes for carrying out the invention that are obvious to those skilled in the relevant fields are intended to be within the scope described herein.
Claims
1. A method of treating a subject with cancer comprising:
- a) treating a subject having cancer with radiation, wherein said cancer is selected from the group consisting of: a brain cancer, glioblastoma multiforme, brain metastases, lung adenocarcinoma, liver cancer, and gastric cancer, and
- b) administering a BACE1 inhibitor to said subject, wherein said BACE1 inhibitor is selected from the group consisting of: MK-8931, PF-06751979, AZD3839, CNP520, E2609, AZD3293, and JNJ-54861911.
2. The method of claim 1, wherein said administering comprises providing said BACE1 inhibitor to said subject in the form of oral pills that said patient takes themselves.
3. The method of claim 1, wherein said administering comprises injecting said BACE1 inhibitor into said subject.
4. The method of claim 1, further comprising: c) repeating said administering daily for at least one week or at least three weeks.
5. The method of claim 1, wherein said administering comprises administering 0.05 mg per kg of the subject to 50 mg per kg of the subject, or administering a total dose of 3-1000 mg.
6. The method of claim 1, wherein said treating with radiation occurs at least about 3 hours prior to said administering.
7. The method of claim 1, wherein said administering occurs no later than 6 days after said treating with radiation.
8. The method of claim 1, wherein said radiation is low-dose radiation.
9. The method of claim 8, wherein said low-dose radiation provides between 0.1-10 Gy of radiation to said subject.
10. The method of claim 1, wherein said subject is a human.
11. The method of claim 1, wherein said BACE1 inhibitor comprises MK-8931.
12. The method of claim 1, further comprising: c) administering said subject an immune checkpoint inhibitor.
13. A method of treating a subject with cancer comprising: administering a BACE1 inhibitor to said subject, wherein said BACE1 inhibitor is selected from the group consisting of: MK-8931, PF-06751979, AZD3839, CNP520, E2609, AZD3293, and JNJ-54861911, and
- wherein said subject has cancer, and wherein said cancer is selected from the group consisting of: a brain cancer, glioblastoma multiforme, brain metastases, lung adenocarcinoma, liver cancer, and gastric cancer.
14. The method of claim 13, wherein said BACE1 inhibitor comprises MK-8931.
15. The method of claim 13, wherein said administering comprises: i) providing said BACE1 inhibitor to said subject in the form of oral pills that said patient takes themselves, or ii) injecting said BACE1 inhibitor into said subject.
16. The method of claim 13, further comprising: repeating said administering daily for at least one week or at least three weeks, and/or wherein said subject is a human.
17. The method of claim 13, further comprising: i) treating a subject with radiation prior to said administering, and/or ii) administering said subject an immune checkpoint inhibitor.
18. The method of claim 1, wherein said subject has glioblastoma multiforme.
19. The method of claim 18, wherein said BACE1 inhibitor comprises MK-8931.
20. The method of claim 13, wherein said subject has glioblastoma multiforme.
21. The method of claim 20, wherein said BACE1 inhibitor comprises MK-8931.
20160318953 | November 3, 2016 | Remick |
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Type: Grant
Filed: Sep 3, 2020
Date of Patent: Jan 24, 2023
Patent Publication Number: 20210069205
Assignee: The Cleveland Clinic Foundation (Cleveland, OH)
Inventors: Shideng Bao (Cleveland, OH), Kui Zhai (Beachwood, OH)
Primary Examiner: Rei Tsang Shiao
Application Number: 17/011,256