HUMAN SODIUM-DEPENDENT BILE ACID TRANSPORTER PROTEINS
A novel sodium-dependent bile acid transporter protein, an Na+/H+ exchange transporter protein, a P-type ATPase protein and a vanilloid receptor protein, and polynucleotides encoding these proteins are useful in screening preventives/remedies for hyperlipemia, arteriosclerosis, genital diseases or digestive diseases; respiratory diseases, renal diseases or digestive diseases; pancreatic diseases, central nerve diseases, digestive diseases or respiratory diseases; inflammatory diseases, rheumatoid diseases or diabetic neurosis; etc.
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The present invention provides a novel sodium-dependent bile acid transporter protein, an Na+/H+ exchange transporter protein, a P-type ATPase protein, a vanilloid receptor protein, polynucleotides encoding these proteins, antisense polynucleotides to the polynucleotides, antibodies to these proteins, compounds that promote or inhibit the activities of the proteins, a method of screening compounds that promote or inhibit the activities of the proteins, compounds obtained by the screening method, and the like.
BACKGROUND ARTBile acid is synthesized in the liver and secreted into a small intestine, and plays an important role in promoting absorption of lipids, lipid-soluble vitamins and cholesterols in the small intestine. Bile acid is re-absorbed efficiently through the small intestine (ileum), returned via a portal vein to the liver and excreted again into bile (enterohepatic circulation). The cholesterol pool size in the body is subject to feedback regulation not only by cholesterol in a meal but also by bile acid in enterohepatic circulation, and thus hypercholesterolemia therapy is conducted by suppression of re-absorption of bile acid into intestines by using a bile acid adsorbent (anion exchange resin).
The sodium-dependent bile acid transporter is considered to contribute to transport of bile acid. In humans, two isoforms of sodium-dependent bile acid transporter have been identified, and NTCP (Na+/taurocholate cotransporting polypeptide) is expressed mainly in the liver (J. Clin. Invest., 93, 1326-1331, 1994), while ISBT (ileal sodium/bile salt cotransporter) is expressed mainly in the ileum/kidney (J. Biol. Chem., 270, 27228-27234, 1995). With respect to ISBT, direct relationship between a gene mutation accompanied by amino acid substitution and insufficient absorption of bile acid is suggested (J. Clin. Invest., 99, 1880-1887, 1997).
A Na+/H+ exchange transporter (NHE) is a typical cation antiporter, which couples in animal cells with Na+ inflow to discharge H+. NHE is divided into 2 major regions, that is, an amino terminal (N) region containing about 500 amino acids comprising a 10- to 13-times transmembrane region and a carboxyl terminal (C) region comprising about 300 amino acids, and its whole structure is common among isoforms. It is known that the former is an ion transport region comprising an amyloride-binding site, and the latter functions as an activity regulatory region.
As isoforms of NHE in humans, 6 kinds of isoforms i.e. NHE1 to NHE3 and NHE5 to NHE7 are reported. NHE1 is distributed broadly in tissues, and involved in regulation of intracellular pH and cell volume. The activity of NHE1 is promoted by a growth factor or simulation with high osmotic pressure, resulting in an increase in intracellular pH. NHE3 is expressed in the kidney and small intestine, and plays an important role in absorption of Na+. It is thus known that the respective isoforms are different in their expression distribution, regulatory mechanism, and the effect of inhibitor.
NHE1 is considered as one factor increasing intracellular Na+ levels after ischemia and participating in causing myocardial difficulties. It is also reported that the activity of NHE1 in patients with hypertension is significantly higher than in healthy persons. In mice spontaneously developing epilepsy, it is confirmed that the disease is caused by a mutation in NHE (Cell, 91, 139-148, 1997).
P-type ATPase is a membrane enzyme participating in transport of various substrates by utilizing energy upon hydrolysis of ATP. The P-type ATPase is divided into 3 classes, depending on its substrate. Type-1 utilizes heavy metals such as Cu2+ ion and Cd2+ ion as the substrate, possesses an N-terminal characteristic structure involved in binding to heavy metals, and has an 8-times transmembrane structure. Wilson's disease is a disease accompanying an abnormality in Cu2+-ATPase participating in excretion of copper in the liver. Type-2 utilizes alkali metals (K+ ion, Na+ ion), alkaline earth metals (Ca2+ ion) or proton (H+) as the substrate. In particular, H+, K+-ATPase (proton pump) in stomach acid-secreting cells is a target of chemicals such as proton pump inhibitors (omeplazole, lansoprazole etc.) that are therapeutic products for stomach ulcer/duodenum ulcer/reflux esophagitis. Further, Na+, K+-ATPase (sodium pump) is a target of chemicals such as cardiac glycosides used for cardiac diseases, and its activity is inhibited by ouabain. Type-3 is the latest determined type, and utilizes aminophospholipids as the substrate. It is also called aminophospholipid translocase (flippase), and reversely transfer phospholipids selectively from outer to inner layers by using energy generated upon hydrolysis of ATP. It is estimated that uneven distribution of lipids on the biomembrane is thereby maintained. No significant difference in structure is recognized between type-2 and type-3, both of which have a 10-times transmembrane structure (Biochemistry, 34, 15607-15613, 1995; Science, 272, 1495-1497, 1996).
Up to now, 17 isoforms of P-type ATPase of type-3 have been identified in mammals. Among them, FIC1 is expressed in tissues such as the pancreas, small intestine, liver etc., and the relationship between an alteration in its gene and hereditary cholestasis is reported (Nature Genet., 18, 219-224, 1998).
The P-type ATPase of type 3 is considered to play an important role in transport of aminophospholipids and in uneven distribution of lipids on the biomembrane, but the detailed functions and structure of each isoform and the relationship thereof with the disease are not so revealed.
As a pain receptor, a vanilloid receptor subtype 1 (VR1) is a non-selective cation channel with high Ca2+ permeability having outward rectification. It is known that VR1 has a 6-times transmembrane region, possesses an H5 region regarded as forming a pore between fifth and sixth transmembrane sites, and has 3 ankyrin repeat domains at the N-terminal thereof. In addition to VR1 (Biochemical and Biophysical Research Communications, 281, 1183, 2001), VRL (vanilloid receptor-like protein) 1 and VRL2 in humans have been cloned up to now, and have about 40% homology with VR1 respectively (Physiol Genomics 4, 165-174, 2001).
Capsaicin has a vanillyl group and is thus called vanilloid, and is an extraneous ligand of vanilloid receptor. No intrinsic ligand has been revealed. Single electric current measurement revealed that VR1 is activated electrophysiologically directly by capsaicin. Further, VR1 is a receptor of multi-stimuli, which is activated not only by chemical stimulation with capsaicin or the like but also by heat stimulation regarded pain stimulation (at a temperature of higher than 43° C. that is a threshold temperature at which pain is induced in humans) and acid stimulation (tissues are acidified in inflammations and ischemia).
VR1 is activated by stimuli (for example capsaicin, heat, proton) causing pain in the living body, and in a morbid state, these stimuli are considered to occur not singly but simultaneously. Receptiveness of every pain in the living body is not elucidated by only VR1, and the presence of other homologues and cofactors is also estimated. In the previously reported VR family, there are various expression sites and stimulation receptivity, and these are considered to function depending on one another, to transmit pain stimulation.
The sodium-dependent bile acid transporter is considered to play an important role in transport of bile acid in the liver and small intestine, but its detailed mechanism and the relationship thereof with the disease are not so revealed. Full elucidation of the substrate specificity of the sodium-dependent bile acid transporter and its role in bile acid metabolism leads to development of therapeutic products for diseases associated with bile acid metabolism.
As described above, NHE is involved in many morbid states, and elucidation of the mechanism of activation and regulation of each isoform of NHE leads to development of therapeutic products.
Elucidation of detailed functions of P-type ATPase of type 3 leads to development of therapeutic products for diseases such as metabolic diseases, central nerve diseases, genital diseases and cancers associated with P-type ATPase of type 3.
The above-mentioned capsaicin is used as an analgesic for relieving pains in diabetic neurosis and articular rheumatism, and thus elucidation of the structure, function and mutual relationship of VR family is considered to lead to development of therapeutic products for pains as a whole.
DISCLOSURE OF INVENTIONThe present inventors made extensive study for solving the problem described above, and as a result they found a novel sodium-dependent bile acid transporter protein. The inventors found that the protein has 44% homology at the amino acid level with human ISBT, and its substrate is estrone sulfate and dehydroepiandrosterone sulfate, and as a result of further examination, they completed the present invention.
The present inventors made extensive study for solving the problem described above, and as a result they found a novel Na+/H+ exchange transporter protein. The amino acid residues at the N-terminal side of the protein consisting of 707 residues were identical with those of the amino acid sequence of TRICH-21 described in WO 02/04520. For inhibiting the protein, it is anticipated that for example, cation (Na+, K+)/H+ exchange transport is inhibited, or transcription of the protein is inhibited to reduce the expression level. For activating the protein, it is anticipated that for example, cation (Na+, K+)/H+ exchange transport is promoted, a promoter for the protein is activated, or its mRNA is stabilized to promote the expression level. As a result of further examination on the basis of these findings, the present inventors arrived at the present invention.
The present inventors made extensive study for solving the problem described above, and as a result they found a novel P-type ATPase. This protein has 67% homology at the amino acid level with P-type ATPase of type 3 i.e. P-type ATPase 8A1 (ATP8A1) (Biochem. Biophys. Res. Commun., 257, 333-339, 1999) and 95% homology with mouse P-type ATPase 8A2 (ATP8A2) (Physiol. Genomics (Online), 1, 139-150, 1999), and can function as P-type ATPase of type 3. For inhibiting the protein, it is anticipated that for example, transport of aminophospholipids is inhibited, or transcription of the protein is inhibited to reduce the expression level. For activating the protein, it is anticipated that for example, transport of aminophospholipids is promoted, a promoter for the protein is activated, or its mRNA is stabilized to promote the expression level. As a result of further examination on the basis of these findings, the present inventors arrived at the present invention.
The present inventors made extensive study for solving the problem described above, and as a result they found a novel vanilloid receptor. This protein has 43% homology at the amino acid level with human vanilloid receptor subtype 1 and can function as a vanilloid receptor. For inhibiting the protein, it is anticipated that for example, cation permeation is inhibited, or transcription of the protein is inhibited to reduce the expression level. For activating the protein, it is anticipated that for example, cation permeation is promoted, a promoter for the protein is activated, or its mRNA is stabilized to promote the expression level. As a result of further examination on the basis of these findings, the present inventors arrived at the present invention.
That is, the present invention provides:
(1) A protein comprising the same or substantially the same amino acid sequence as an amino acid sequence represented by SEQ ID NO: 1, SEQ ID NO: 14 or SEQ ID NO: 104, or a salt thereof.
(2) A protein consisting of an amino acid sequence represented by SEQ ID NO: 1 or SEQ ID NO: 14, or a salt thereof.
(3) A protein consisting of an amino acid sequence represented by SEQ ID NO: 104, or a salt thereof
(4) A partial peptide of the protein according to the above-mentioned (1), or a salt thereof
(5) A polynucleotide comprising a polynucleotide encoding the protein according to the above-mentioned (1) or the partial peptide according to the above-mentioned (4).
(6) The polynucleotide according to the above-mentioned (5), which is DNA.
(7) A DNA consisting of a base sequence represented by SEQ ID NO: 2, SEQ ID NO: 11, SEQ ID NO: 12, SEQ ID NO: 14, SEQ ID NO: 105 or SEQ ID NO: 112.
(8) A recombinant vector comprising the polynucleotide according to the above-mentioned (5).
(9) A transformant transformed with the recombinant vector according to the above-mentioned (8).
(10) A method of manufacturing the protein or its salt according to the above-mentioned (1) or the partial peptide or its salt according to the above-mentioned (4), which comprises culturing the transformant according to the above-mentioned (9), forming and accumulating the protein according to the above-mentioned (1) or the partial peptide according to the above-mentioned (4), and recovering it.
(11) A medicine comprising the protein according to the above-mentioned (1) or the partial peptide according to the above-mentioned (4).
(12) A medicine comprising the polynucleotide according to the above-mentioned (5).
(13) An antibody to the protein according to the above-mentioned (1), the partial peptide according to the above-mentioned (4), or a salt of the protein or partial peptide.
(14) A medicine comprising the antibody according to the above-mentioned (13).
(15) A diagnostic agent comprising the antibody according to the above-mentioned (13).
(16) A polynucleotide comprising a base sequence complementary or substantially complementary to the base sequence of the polynucleotide according to the above-mentioned (5) or a part of the base sequence.
(17) A medicine comprising the polynucleotide according to the above-mentioned (16).
(18) A method of screening a compound or its salt that promotes or inhibits the activity of the protein or its salt according to the above-mentioned (1) or the partial peptide or its salt according to the above-mentioned (4), which comprises using the protein or its salt according to the above-mentioned (1) or the partial peptide or its salt according to the above-mentioned (4).
(19) The screening method according to the above-mentioned (18), wherein the activity of the protein or its salt according to the above-mentioned (1) or the partial peptide or its salt according to the above-mentioned (4) is the substrate transport activity of the protein.
(19a) The screening method according to the above-mentioned (19), wherein the substrate is a steroid hormone or a metabolite thereof or bile acid.
(19b) The screening method according to the above-mentioned (19a), wherein the substrate is a steroid hormone or a metabolite thereof.
(19c) The screening method according to the above-mentioned (19b), wherein the steroid hormone or a metabolite thereof is estrogen, progestogen, androgen, mineral corticoid or glucocorticoid or a sulfate conjugate or glucuronide conjugate thereof.
(19d) The screening method according to the above-mentioned (19b), wherein the steroid hormone or a metabolite is estrogen, androgen or a sulfate conjugate.
(19e) The screening method according to the above-mentioned (19a), wherein the substrate is estrogen, dehydroepiandrosterone or a sulfate conjugate thereof.
(20) A kit for screening a compound or its salt that promotes or inhibits the activity of the protein or its salt according to the above-mentioned (1) or the partial peptide or its salt according to the above-mentioned (4), which comprises the protein or its salt according to the above-mentioned (1) or the partial peptide or its salt according to the above-mentioned (4).
(21) A compound or its salt that promotes or inhibits the activity of the protein or its salt according to the above-mentioned (1) or the partial peptide or its salt according to the above-mentioned (4), which is obtained by using the screening method according to the above-mentioned (18) or the screening kit according to the above-mentioned (19).
(22) A medicine comprising the compound or its salt according to the above-mentioned (21).
(23) A method of screening a compound or its salt that promotes or inhibits the expression of a gene for the protein according to the above-mentioned (1), which comprises using the polynucleotide according to the above-mentioned (5).
(24) A kit for screening a compound or its salt that promotes or inhibits the expression of a gene for the protein according to the above-mentioned (1), which comprises the polynucleotide according to the above-mentioned (5).
(25) A compound or its salt that promotes or inhibits the expression of a gene for the protein according to the above-mentioned (1), which is obtained by the screening method according to the above-mentioned (23) or the screening kit according to the above-mentioned (24).
(26) A medicine comprising the compound or its salt according to the above-mentioned (25).
(27) The medicine according to the above-mentioned (11), (12), (14), (17), (22) or (26), which is a prophylactic/therapeutic agent for hyperlipemia, arteriosclerosis, genital diseases or digestive diseases.
(28) A prophylactic/therapeutic method for hyperlipemia, arteriosclerosis, genital diseases or digestive diseases, which comprises administering an effective amount of the compound or its salt according to the above-mentioned (21) or (25) into a mammal.
(29) Use of the compound or its salt according to the above-mentioned (21) or (25) in producing a prophylactic/therapeutic agent for hyperlipemia, arteriosclerosis, genital diseases or digestive diseases.
(30) A protein or its salt comprising an amino acid sequence identical or substantially identical with an amino acid sequence represented by SEQ ID NO: 18.
(31) A protein consisting of an amino acid sequence represented by SEQ ID NO: 18, or a salt thereof.
(32) A partial peptide of the protein according to the above-mentioned (30), or a salt thereof.
(33) A polynucleotide comprising a polynucleotide encoding the protein according to the above-mentioned (30) or the partial peptide according to the above-mentioned (32).
(34) The polynucleotide according to the above-mentioned (33), which is DNA.
(35) A DNA consisting of a base sequence represented by SEQ ID NO: 19 or SEQ ID NO: 41.
(36) A recombinant vector comprising the polynucleotide according to the above-mentioned (33).
(37) A transformant transformed with the recombinant vector according to the above-mentioned (36).
(38) A method of manufacturing the protein or its salt according to the above-mentioned
(30) or the partial peptide or its salt according to the above-mentioned (32), which comprises culturing the transformant according to the above-mentioned (37), forming and accumulating the protein according to the above-mentioned (30) or the partial peptide according to the above-mentioned (32), and recovering it.
(39) A medicine comprising the protein according to the above-mentioned (30) or the partial peptide according to the above-mentioned (32).
(40) A medicine comprising the polynucleotide according to the above-mentioned (33).
(41) An antibody to the protein according to the above-mentioned (30), the partial peptide according to the above-mentioned (32), or a salt of the protein or partial peptide.
(42) A medicine comprising the antibody according to the above-mentioned (41).
(43) A diagnostic agent comprising the antibody according to the above-mentioned (41).
(44) A polynucleotide comprising a base sequence complementary or substantially complementary to the base sequence of the polynucleotide according to the above-mentioned (33) or a part of the base sequence.
(45) A medicine comprising the polynucleotide according to the above-mentioned (44).
(46) A method of screening a compound or its salt that promotes or inhibits the activity of the protein or its salt according to the above-mentioned (30) or the partial peptide or its salt according to the above-mentioned (32), which comprises using the protein or its salt according to the above-mentioned (30) or the partial peptide or its salt according to the above-mentioned (32).
(47) A kit for screening a compound or its salt that promotes or inhibits the activity of the protein or its salt according to the above-mentioned (30) or the partial peptide or its salt according to the above-mentioned (32), which comprises the protein or its salt according to the above-mentioned (30) or the partial peptide or its salt according to the above-mentioned (32).
(48) A compound or its salt that promotes or inhibits the activity of the protein or its salt according to the above-mentioned (30) or the partial peptide or its salt according to the above-mentioned (32), which is obtained by using the screening method according to the above-mentioned (46) or the screening kit according to the above-mentioned (47).
(49) A medicine comprising the compound or its salt according to the above-mentioned (48).
(50) A method of screening a compound or its salt that promotes or inhibits the expression of a gene for the protein according to the above-mentioned (30), which comprises using the polynucleotide according to the above-mentioned (33).
(51) A kit for screening a compound or its salt that promotes or inhibits the expression of a gene for the protein according to the above-mentioned (30), which comprises the polynucleotide according to the above-mentioned (33).
(52) A compound or its salt that promotes or inhibits the expression of a gene for the protein according to the above-mentioned (30), which is obtained by the screening method according to the above-mentioned (50) or the screening kit according to the above-mentioned (51).
(53) A medicine comprising the compound or its salt according to the above-mentioned (52).
(54) The medicine according to the above-mentioned (39), (40), (42), (45), (49) or (53), which is a prophylactic/therapeutic agent for respiratory diseases, renal diseases or digestive diseases.
(55) A prophylactic/therapeutic method for respiratory diseases, renal diseases or digestive diseases, which comprises administering an effective amount of the compound or its salt according to the above-mentioned (48) or (52) into a mammal.
(56) Use of the compound or its salt according to the above-mentioned (48) or (52) in producing a prophylactic/therapeutic agent for respiratory diseases, renal diseases or digestive diseases.
(57) A protein comprising an amino acid sequence identical or substantially identical with an amino acid sequence represented by SEQ ID NO: 42, or its salt.
(58) A protein consisting of an amino acid sequence represented by SEQ ID NO: 42, or a salt thereof.
(59) A partial peptide of the protein according to the above-mentioned (57), or a salt thereof (60) A polynucleotide comprising a polynucleotide encoding the protein according to the above-mentioned (57) or the partial peptide according to the above-mentioned (59).
(61) The polynucleotide according to the above-mentioned (60), which is DNA.
(62) A DNA consisting of a base sequence represented by SEQ ID NO: 43, SEQ ID NO: 60, SEQ ID NO: 61 or SEQ ID NO: 62.
(63) A recombinant vector comprising the polynucleotide according to the above-mentioned (60).
(64) A transformant transformed with the recombinant vector according to the above-mentioned (63).
(65) A method of manufacturing the protein or its salt according to the above-mentioned (57) or the partial peptide or its salt according to the above-mentioned (59), which comprises culturing the transformant according to the above-mentioned (64), forming and accumulating the protein according to the above-mentioned (57) or the partial peptide according to the above-mentioned (59), and recovering it.
(66) A medicine comprising the protein according to the above-mentioned (57) or the partial peptide according to the above-mentioned (59).
(67) A medicine comprising the polynucleotide according to the above-mentioned (60).
(68) An antibody to the protein according to the above-mentioned (57), the partial peptide according to the above-mentioned (59), or a salt of the protein or partial peptide.
(69) A medicine comprising the antibody according to the above-mentioned (68).
(70) A diagnostic agent comprising the antibody according to the above-mentioned (68).
(71) A polynucleotide comprising a base sequence complementary or substantially complementary to the base sequence of the polynucleotide according to the above-mentioned (60) or a part of the base sequence.
(72) A medicine comprising the polynucleotide according to the above-mentioned (71).
(73) A method of screening a compound or its salt that promotes or inhibits the activity of the protein or its salt according to the above-mentioned (57) or the partial peptide or its salt according to the above-mentioned (59), which comprises using the protein or its salt according to the above-mentioned (57) or the partial peptide or its salt according to the above-mentioned (59).
(74) A kit for screening a compound or its salt that promotes or inhibits the activity of the protein or its salt according to the above-mentioned (57) or the partial peptide or its salt according to the above-mentioned (59), which comprises the protein or its salt according to the above-mentioned (57) or the partial peptide or its salt according to the above-mentioned (59).
(75) A compound or its salt that promotes or inhibits the activity of the protein or its salt according to the above-mentioned (57) or the partial peptide or its salt according to the above-mentioned (59), which is obtained by using the screening method according to the above-mentioned (73) or the screening kit according to the above-mentioned (74).
(76) A medicine comprising the compound or its salt according to the above-mentioned (75).
(77) A method of screening a compound or its salt that promotes or inhibits the expression of a gene for the protein according to the above-mentioned (57), which comprises using the polynucleotide according to the above-mentioned (60).
(78) A kit for screening a compound or its salt that promotes or inhibits the expression of a gene for the protein according to the above-mentioned (57), which comprises the polynucleotide according to the above-mentioned (60).
(79) A compound or its salt that promotes or inhibits the expression of a gene for the protein according to the above-mentioned (57), which is obtained by the screening method according to the above-mentioned (77) or the screening kit according to the above-mentioned (78).
(80) A medicine comprising the compound or its salt according to the above-mentioned (79).
(81) The medicine according to the above-mentioned (66), (67), (69), (72), (76) or (80), which is a prophylactic/therapeutic agent for pancreatic diseases, central nerve diseases, digestive diseases or respiratory diseases.
(82) A prophylactic/therapeutic method for pancreatic diseases, central nerve diseases, digestive diseases or respiratory diseases, which comprises administering an effective amount of the compound or its salt according to the above-mentioned (75) or (79) into a mammal.
(83) Use of the compound or its salt according to the above-mentioned (75) or (79) in producing a prophylactic/therapeutic agent for pancreatic diseases, central nerve diseases, digestive diseases or respiratory diseases.
(84) A protein or its salt comprising an amino acid sequence identical or substantially identical with an amino acid sequence represented by SEQ ID NO: 66.
(85) A protein consisting of an amino acid sequence represented by SEQ ID NO: 66, or a salt thereof.
(86) A partial peptide of the protein according to the above-mentioned (84), or a salt thereof.
(87) A polynucleotide comprising a polynucleotide encoding the protein according to the above-mentioned (84) or the partial peptide according to the above-mentioned (86).
(88) The polynucleotide according to the above-mentioned (87), which is DNA.
(89) A DNA consisting of a base sequence represented by SEQ ID NO: 67 or SEQ ID NO: 103.
(90) A recombinant vector comprising the polynucleotide according to the above-mentioned (86).
(91) A transformant transformed with the recombinant vector according to the above-mentioned (90).
(92) A method of manufacturing the protein or its salt according to the above-mentioned (84) or the partial peptide or its salt according to the above-mentioned (86), which comprises culturing the transformant according to the above-mentioned (91), forming and accumulating the protein according to the above-mentioned (84) or the partial peptide according to the above-mentioned (86), and recovering it.
(93) A medicine comprising the protein according to the above-mentioned (84) or the partial peptide according to the above-mentioned (86).
(94) A medicine comprising the polynucleotide according to the above-mentioned (87).
(95) An antibody to the protein according to the above-mentioned (84), the partial peptide according to the above-mentioned (86), or a salt of the protein or partial peptide.
(96) A medicine comprising the antibody according to the above-mentioned (95).
(97) A diagnostic agent comprising the antibody according to the above-mentioned (95).
(98) A polynucleotide comprising a base sequence complementary or substantially complementary to the base sequence of the polynucleotide according to the above-mentioned (87) or a part of the base sequence.
(99) A medicine comprising the polynucleotide according to the above-mentioned (98).
(100) A method of screening a compound or its salt that promotes or inhibits the activity of the protein or its salt according to the above-mentioned (84) or the partial peptide or its salt according to the above-mentioned (86), which comprises using the protein or its salt according to the above-mentioned (84) or the partial peptide or its salt according to the above-mentioned (86).
(101) A kit for screening a compound or its salt that promotes or inhibits the activity of the protein or its salt according to the above-mentioned (84) or the partial peptide or its salt according to the above-mentioned (86), which comprises the protein or its salt according to the above-mentioned (84) or the partial peptide or its salt according to the above-mentioned (86).
(102) A compound or its salt that promotes or inhibits the activity of the protein or its salt according to the above-mentioned (84) or the partial peptide or its salt according to the above-mentioned (86), which is obtained by using the screening method according to the above-mentioned (100) or the screening kit according to the above-mentioned (101).
(103) A medicine comprising the compound or its salt according to the above-mentioned (102).
(104) A method of screening a compound or its salt that promotes or inhibits the expression of a gene for the protein according to the above-mentioned (84), which comprises using the polynucleotide according to the above-mentioned (87).
(105) A kit for screening a compound or its salt that promotes or inhibits the expression of a gene for the protein according to the above-mentioned (84), which comprises the polynucleotide according to the above-mentioned (87).
(106) A compound or its salt that promotes or inhibits the expression of a gene for the protein according to the above-mentioned (84), which is obtained by the screening method according to the above-mentioned (104) or the screening kit according to the above-mentioned (105).
(107) A medicine comprising the compound or its salt according to the above-mentioned (106).
(108) A method of determining a ligand to the protein or its salt according to the above-mentioned (84) or the partial peptide or its salt according to the above-mentioned (86), which comprises using the protein or its salt.
(109) A method of screening a compound or its salt that alters the binding property between a ligand and the protein or its salt according to the above-mentioned (84) or the partial peptide or its salt according to the above-mentioned (86), which comprises using the protein, the partial peptide or its salt.
(110) A kit for screening a compound or its salt that alters the binding property between a ligand and the protein or its salt according to the above-mentioned (84) or the partial peptide or its salt according to the above-mentioned (86), which comprises the protein, the partial peptide or its salt.
(111) A compound or its salt that alters the binding property between a ligand and the protein or its salt according to the above-mentioned (84) or the partial peptide or its salt according to the above-mentioned (86), which is obtained by the screening method according to the above-mentioned (109) or the screening kit according to the above-mentioned (110).
(112) A medicine comprising the compound or its salt according to the above-mentioned (111).
(113) A medicine according to the above-mentioned (93), the above-mentioned (94), the above-mentioned (96), the above-mentioned (99), the above-mentioned (103), the above-mentioned (107) or the above-mentioned (112), which is a prophylactic/therapeutic agent for inflammatory diseases, rheumatoid diseases or diabetic neurosis.
(114) A prophylactic/therapeutic method for inflammatory diseases, rheumatoid diseases or diabetic neurosis, which comprises administering an effective amount of the compound or its salt according to the above-mentioned (102), (106) or (111) into a mammal.
(115) Use of the compound or its salt according to the above-mentioned (102), (106) or (111) in producing a prophylactic/therapeutic agent for inflammatory diseases, rheumatoid diseases or diabetic neurosis.
A protein comprising the same or substantially the same amino acid sequence as an amino acid sequence represented by SEQ ID NO: 1, 14, 104, 18, 42 or 66 (hereinafter, sometimes referred as to the protein of the present invention) may be any protein derived from any cells (e.g., liver cells, splenocytes, nerve cells, glial cells, β cells of pancreas, bone marrow cells, mesangial cells, Langerhans' cells, epidermic cells, epithelial cells, goblet cells, endothelial cells, smooth muscular cells, fibroblasts, fibrocytes, myocytes, fat cells, immune cells (e.g., macrophage, T cells, B cells, natural killer cells, mast cells, neutrophil, basophil, eosinophil, monocyte), megakaryocyte, synovial cells, chondrocytes, bone cells, osteoblasts, osteoclasts, mammary gland cells, hepatocytes or interstitial cells, the corresponding precursor cells, stem cells, cancer cells, etc.), or any tissues where such cells are present, e.g., brain or any region of the brain (e.g., olfactory bulb, amygdaloid nucleus, basal ganglia, hippocampus, thalamus, hypothalamus, cerebral cortex, medulla oblongata and cerebellum), spinal cord, hypophysis, stomach, pancreas, kidney, liver, gonad, thyroid, gall-bladder, bone marrow, adrenal gland, skin, muscle, lung, gastrointestinal tract (e.g., large intestine and small intestine), blood vessel, heart, thymus, spleen, submandibular gland, peripheral blood, prostate, testis, ovary, placenta, uterus, bone, joint, skeletal muscle, etc. from human and non-human mammals (e.g., guinea pigs, rats, mice, chickens, rabbits, swine, sheep, bovine, monkeys, etc.), or the protein may also be a synthetic protein.
Substantially the same amino acid sequence as the amino acid sequence represented by SEQ ID NO: 1 includes an amino acid sequence having at least about 50% homology, preferably at least about 70% homology, more preferably at least about 80% homology, still more preferably at least about 90% homology, further more preferably at least about 95% homology to the amino acid sequence represented by SEQ ID NO: 1.
Preferable examples of the protein comprising substantially the same amino acid sequence as that represented by SEQ ID NO: 1 include a protein comprising substantially the same amino acid sequence as that represented by SEQ ID NO: 1 and having an activity substantially equivalent to that of a protein having the amino acid sequence represented by SEQ ID NO: 1, etc.
Substantially the same amino acid sequence as that represented by SEQ ID NO: 14 includes an amino acid sequence having at least about 50% homology, preferably at least about 70% homology, more preferably at least about 80% homology, still more preferably at least about 90% homology, further more preferably at least about 95% homology to the amino acid sequence represented by SEQ ID NO: 14.
Preferable examples of the protein comprising substantially the same amino acid sequence as that represented by SEQ ID NO: 14 include a protein comprising substantially the same amino acid sequence as that represented by SEQ ID NO: 14 and having an activity substantially equivalent to a protein having the amino acid sequence represented by SEQ ID NO: 14, etc.
Substantially the same amino acid sequence as that represented by SEQ ID NO: 104 includes an amino acid sequence having at least about 75% homology, preferably at least about 80% homology, more preferably at least about 90% homology, still more preferably at least about 95% homology to the amino acid sequence represented by SEQ ID NO: 104.
Preferable examples of the protein comprising substantially the same amino acid sequence as that represented by SEQ ID NO: 104 include a protein comprising substantially the same amino acid sequence as that represented by SEQ ID NO: 104 and having an activity substantially equivalent to that of a protein having the amino acid sequence represented by SEQ ID NO: 104, etc.
The substantially equivalent activity includes, for example, substrate transport.
The substrate includes, for example, steroid hormone, bile acid etc.
The steroid hormone includes, for example, estrogen, progestogen, androgen, mineral corticoid, glucocorticoid, steroid chemicals or metabolites thereof (e.g., sulfate conjugates, glucuronide conjugates etc.) etc.
The estrogen includes, for example, estrone, estradiol, estriol, estetrol etc.
The progestogen includes, for example, progesterone, pregnanediol etc.
The androgen includes, for example, dehydroepiandrosterone, testosterone, androstanedione, 5α-dihydrotestosterone, androsterone etc.
The mineral corticoid includes, for example, aldosterone etc.
The glucocorticoid includes, for example, cortisol, cortisone, corticosterone, dehydrocorticosterone etc.
The steroid chemicals include, for example, dexamethasone, betamethasone, prednisolone, triamcinolone, fluorocortisone, clomiphene, tamoxifen, danazol etc.
The bile acid includes, for example, taurocholic acid, glicocholic acid, cholic acid, lithocholic acid, deoxycholic acid, taurodeoxycholic acid, tauroursodeoxycholic acid, chenodeoxycholic acid, glicochenodeoxycholic acid, glicodeoxycholic acid etc.
The terms “substantially equivalent” mean that the activity is inherently (e.g. physiologically or pharmacologically) equivalent. Therefore, although it is preferred that the above-mentioned substrate transport be equivalent (e.g., about 0.01- to 100-fold, preferably about 0.1- to 10-fold, more preferably about 0.5- to 2-fold), quantitative factors such as a level of the activity, a molecular weight of the protein, etc. may differ.
The activities such as substrate transport or the like can be determined according to a publicly known method, for example, by a method described in Am. J. Physiol., 274, G157-169, 1998, or its modified method.
Substantially the same amino acid sequence as that represented by SEQ ID NO: 18 includes an amino acid sequence having at least about 90% homology, preferably at least about 95% homology, more preferably at least about 97% homology, much more preferably at least about 99% homology to the amino acid sequence represented by SEQ ID NO: 18.
Preferable examples of the protein comprising substantially the same amino acid sequence as that represented by SEQ ID NO: 18 include a protein comprising substantially the same amino acid sequence as that represented by SEQ ID NO: 18 and having an activity substantially equivalent to a protein having the amino acid sequence represented by SEQ ID NO: 18, etc.
The substantially equivalent activity includes, for example, a cation (preferably monovalent cation such as Na+, K+, etc.)/H+ exchange transport activity. The terms “substantially equivalent” mean that the activity is inherently (e.g. physiologically or pharmacologically) equivalent. Therefore, although it is preferred that the cation (preferably monovalent cation such as Na+, K+, etc.)/H+ exchange transport activity be equivalent (e.g., about 0.01- to 100-fold, preferably about 0.1- to 10-fold, more preferably about 0.5- to 2-fold), quantitative factors such as a level of the activity, a molecular weight of the protein, etc. may differ.
The activities such as the cation (preferably monovalent cation such as Na+, K+, etc.)/H+ exchange transport activity or the like can be determined according to a publicly known method, for example, by a method described in J. Biol. Chem., 274, 3978-3987, 1998, or its modified method.
Substantially the same amino acid sequence as that represented by SEQ ID NO: 42 includes an amino acid sequence having at least about 96% homology, preferably at least about 97% homology, more preferably at least about 98% homology, much more preferably at least about 99% homology to the amino acid sequence represented by SEQ ID NO: 42.
Preferable examples of the protein comprising substantially the same amino acid sequence as that represented by SEQ ID NO: 42 include a protein comprising substantially the same amino acid sequence as that represented by SEQ ID NO: 42 and having an activity substantially equivalent to that of a protein having the amino acid sequence represented by SEQ ID NO: 42, etc.
The substantially equivalent activity includes, for example, transport of aminophospholipid. The terms “substantially equivalent” mean that the activity is inherently (e.g. physiologically or pharmacologically) equivalent. Therefore, although it is preferred that the transport of aminophospholipid be equivalent (e.g., about 0.01- to 100-fold, preferably about 0.1- to 10-fold, more preferably about 0.5- to 2-fold), quantitative factors such as a level of the activity, a molecular weight of the protein, etc. may differ.
The activities such as the transport of aminophospholipid or the like can be determined according to a publicly known method, for example, by a method described in J. Biol. Chem., 275, 23378-23386, 1998, or its modified method.
Substantially the same amino acid sequence as that represented by SEQ ID NO: 66 includes an amino acid sequence having at least about 45% homology, preferably at least about 50% homology, more preferably at least about 70% homology, still more preferably at least about 80% homology, further more preferably at least about 90% homology, further still more preferably at least about 95% homology to the amino acid sequence represented by SEQ ID NO: 66.
Preferable examples of the protein comprising substantially the same amino acid sequence as that represented by SEQ ID NO: 66 include a protein comprising substantially the same amino acid sequence as that represented by SEQ ID NO: 66 and having an activity substantially equivalent to that of a protein having the amino acid sequence represented by SEQ ID NO: 66, etc.
The substantially equivalent activity includes, for example, a cation (e.g., Ca+2 etc.) channel activity. The terms “substantially equivalent” mean that the activity is inherently (e.g. physiologically or pharmacologically) equivalent. Therefore, although it is preferred that the cation channel activity be equivalent (e.g., about 0.01- to 100-fold, preferably about 0.1- to 10-fold, more preferably about 0.5- to 2-fold), quantitative factors such as a level of the activity, a molecular weight of the protein, etc. may differ.
The activities such as the cation channel activity or the like can be determined according to a publicly known method, for example, by a method described in Nature, 389, 816, 1997, or its modified method.
The protein of the present invention includes, for example, (1) (i) amino acid sequences represented by SEQ ID NO: 1, SEQ ID NO: 14 or SEQ ID NO: 104, wherein at least 1 or 2 amino acids (for example approximately 1 to 200 amino acids, preferably approximately 1 to 150 amino acids, more preferably approximately 1 to 100 amino acids, still more preferably approximately 1 to 50 amino acids, further more preferably approximately 1 to 30 amino acids, further still more preferably approximately 1 to 10, and most preferably several (1 to 5) amino acids) are deleted, (ii) amino acid sequences represented by SEQ ID NO: 1, SEQ ID NO: 14 or SEQ ID NO: 104, to which at least 1 or 2 amino acids (for example approximately 1 to 200 amino acids, preferably approximately 1 to 150 amino acids, more preferably approximately 1 to 100 amino acids, still more preferably approximately 1 to 50 amino acids, further more preferably approximately 1 to 30 amino acids, further still more preferably approximately 1 to 10, and most preferably several (1 to 5) amino acids) are added, (iii) amino acid sequences represented by SEQ ID NO: 1, SEQ ID NO: 14 or SEQ ID NO: 104, into which at least 1 or 2 amino acids (for example approximately 1 to 200 amino acids, preferably approximately 1 to 150 amino acids, more preferably approximately 1 to 100 amino acids, still more preferably approximately 1 to 50 amino acids, further more preferably approximately 1 to 30 amino acids, further still more preferably approximately 1 to 10, and most preferably several (1 to 5) amino acids) are inserted, (iv) amino acid sequences represented by SEQ ID NO: 1, SEQ ID NO: 14 or SEQ ID NO: 104, wherein at least 1 or 2 amino acids (for example approximately 1 to 200 amino acids, preferably approximately 1 to 150 amino acids, more preferably approximately 1 to 100 amino acids, still more preferably approximately 1 to 50 amino acids, further more preferably approximately 1 to 30 amino acids, further still more preferably approximately 1 to 10, and most preferably several (1 to 5) amino acids) are substituted by other amino acids or (v) muteins comprising a combination of the amino acid sequences described in the above, (2) (i) an amino acid sequence represented by SEQ ID NO: 18, from which at least 1 or 2 amino acids (for example approximately 1 to 90 amino acids, preferably approximately 1 to 50 amino acids, more preferably approximately 1 to 30 amino acids, still more preferably approximately 1 to 10 amino acids, further more preferably several (1 to 5) amino acids) are deleted, (ii) an amino acid sequence represented by SEQ ID NO: 18, to which at least 1 or 2 amino acids (for example approximately 1 to 200 amino acids, preferably approximately 1 to 150 amino acids, more preferably approximately 1 to 100 amino acids, still more preferably approximately 1 to 50 amino acids, further more preferably approximately 1 to 30 amino acids, further still more preferably 1 to 10 amino acids and most preferably several (1 to 5) amino acids) are added, (iii) an amino acid sequence represented by SEQ ID NO: 18, into which at least 1 or 2 amino acids (for example approximately 1 to 200 amino acids, preferably approximately 1 to 150 amino acids, more preferably approximately 1 to 100 amino acids, still more preferably approximately 1 to 50 amino acids, further more preferably approximately 1 to 30 amino acids, further still more preferably 1 to 10 amino acids and most preferably several (1 to 5) amino acids) are inserted, (iv) an amino acid sequence represented by SEQ ID NO: 18, wherein at least 1 or 2 amino acids (for example approximately 1 to 200 amino acids, preferably approximately 1 to 150 amino acids, more preferably approximately 1 to 100 amino acids, still more preferably approximately 1 to 50 amino acids, further more preferably approximately 1 to 30 amino acids, further still more preferably 1 to 10 amino acids and most preferably several (1 to 5) amino acids) are substituted by other amino acids or (v) muteins comprising a combination of the amino acid sequences described in the above, (3) (i) an amino acid sequence represented by SEQ ID NO: 42, from which at least 1 or 2 amino acids (for example approximately 1 to 50 amino acids, preferably approximately 1 to 30 amino acids, more preferably approximately 1 to 10 amino acids, and most preferably several (1 to 5) amino acids) are deleted, (ii) an amino acid sequence represented by SEQ ID NO: 42, to which at least 1 or 2 amino acids (for example approximately 1 to 200 amino acids, preferably approximately 1 to 150 amino acids, more preferably approximately 1 to 100 amino acids, still more preferably approximately 1 to 50 amino acids, further more preferably approximately 1 to 30 amino acids, further still more preferably 1 to 10 amino acids and most preferably several (1 to 5) amino acids) are added, (iii) an amino acid sequence represented by SEQ ID NO: 42, into which at least 1 or 2 amino acids (for example approximately 1 to 200 amino acids, preferably approximately 1 to 150 amino acids, more preferably approximately 1 to 100 amino acids, still more preferably approximately 1 to 50 amino acids, further more preferably approximately 1 to 30 amino acids, further still more preferably 1 to 10 amino acids and most preferably several (1 to 5) amino acids) are inserted, (iv) an amino acid sequence represented by SEQ ID NO: 42, wherein at least 1 or 2 amino acids (for example approximately 1 to 200 amino acids, preferably approximately 1 to 150 amino acids, more preferably approximately 1 to 100 amino acids, still more preferably approximately 1 to 50 amino acids, further more preferably approximately 1 to 30 amino acids, further still more preferably 1 to 10 amino acids and most preferably several (1 to 5) amino acids) are substituted by other amino acids or (v) muteins comprising a combination of the amino acid sequences described in the above, and (4) (i) an amino acid sequence represented by SEQ ID NO: 66, from which at least 1 or 2 amino acids (for example approximately 1 to 200 amino acids, preferably approximately 1 to 150 amino acids, more preferably approximately 1 to 100 amino acids, still more preferably approximately 1 to 50 amino acids, further more preferably approximately 1 to 30 amino acids, further still more preferably 1 to 10 amino acids and most preferably several (1 to 5) amino acids) are deleted, (ii) an amino acid sequence represented by SEQ ID NO: 66, to which at least 1 or 2 amino acids (for example approximately 1 to 200 amino acids, preferably approximately 1 to 150 amino acids, more preferably approximately 1 to 100 amino acids, still more preferably approximately 1 to 50 amino acids, further more preferably approximately 1 to 30 amino acids, further still more preferably 1 to 10 amino acids and most preferably several (1 to 5) amino acids) are added, (iii) an amino acid sequence represented by SEQ ID NO: 66, into which at least 1 or 2 amino acids (for example approximately 1 to 200 amino acids, preferably approximately 1 to 150 amino acids, more preferably approximately 1 to 100 amino acids, still more preferably approximately 1 to 50 amino acids, further more preferably approximately 1 to 30 amino acids, further still more preferably 1 to 10 amino acids and most preferably several (1 to 5) amino acids) are inserted, (iv) an amino acid sequence represented by SEQ ID NO: 66, wherein at least 1 or 2 amino acids (for example approximately 1 to 200 amino acids, preferably approximately 1 to 150 amino acids, more preferably approximately 1 to 100 amino acids, still more preferably approximately 1 to 50 amino acids, further more preferably approximately 1 to 30 amino acids, further still more preferably 1 to 10 amino acids and most preferably several (1 to 5) amino acids) are substituted by other amino acids or (v) muteins comprising a combination of the amino acid sequences described in the above.
When the amino acid sequence has undergone insertion, deletion or substitution as described above, the position of the insertion, deletion or substitution is not particularly limited.
The proteins in the present specification are represented in accordance with the conventional way of describing peptides, that is, the N-terminus (amino terminus) at the left hand and the C-terminus (carboxyl terminus) at the right hand. In the proteins of the present invention including the protein comprising the amino acid sequence represented by SEQ ID NO: 1, the C-terminus is usually in the form of a carboxyl group (—COOH) or a carboxylate (—COO−) but may be in the form of an amide (—CONH2) or an ester (—COOR).
Examples of the ester group shown by R include a C1-6 alkyl group such as methyl, ethyl, n-propyl, isopropyl, n-butyl, etc.; a C3-8 cycloalkyl group such as cyclopentyl, cyclohexyl, etc.; a C6-12 aryl group such as phenyl, α-naphthyl, etc.; a C7-14 aralkyl group such as a phenyl-C1-2-alkyl group, e.g., benzyl, phenethyl, etc., or an α-naphthyl-C1-2-alkyl group such as α-naphthylmethyl, etc.; and a pivaloyloxymethyl group or the like.
Where the protein of the present invention has a carboxyl group (or a carboxylate) at a position other than the C-terminus, it may be amidated or esterified and such an amide or ester is also included within the protein of the present invention. As the ester group herein, the same esters as those described with respect to the above C-terminal are used.
Furthermore, examples of the protein of the present invention include variants of the above proteins, wherein the N-terminal amino group residue (e.g. methionine residue) of the protein supra is protected with a protecting group (for example, a C1-6 acyl group such as a C1-6 alkanoyl group, e.g., formyl group, acetyl group, etc.); those wherein the N-terminal region is cleaved in vivo and the glutamyl group thus formed is pyroglutaminated; those wherein a substituent (e.g., —OH, —SH, amino group, imidazole group, indole group, guanidino group, etc.) on the side chain of an amino acid in the molecule is protected with a suitable protecting group (e.g., a C1-6 acyl group such as a C2-6 alkanoyl group, e.g., formyl group, acetyl group, etc.), or conjugated proteins such as glycoproteins having sugar chains bound thereto.
Specific examples of the protein of the present invention include proteins comprising amino acid sequences represented by SEQ ID NO: 1, SEQ ID NO: 14, SEQ ID NO: 104, SEQ ID NO: 18, SEQ ID NO: 42 or SEQ ID NO: 66.
Partial peptides of the protein of the present invention may be any peptides insofar as they are partial peptides of the protein of the present invention and preferably have properties identical with those of the protein of the present invention.
For example, peptides having at least 5, preferably at least 10, more preferably at least 20, still more preferably at least 50, further more preferably at least 70, further still more preferably at least 100 and most preferably at least 200 amino acids in the amino acid sequence which constitutes the protein of the present invention are used.
The partial peptide of the present invention may contain an amino acid sequence, wherein at least 1 or 2 amino acids (for example approximately 1 to 20 amino acids, preferably approximately 1 to 10 amino acids, more preferably several (1 to 5) amino acids) are deleted, to which at least 1 or 2 amino acids (for example approximately 1 to 20 amino acids, preferably approximately 1 to 10 amino acids, more preferably several (1 to 5) amino acids) are added, into which at least 1 or 2 amino acids (for example approximately 1 to 20 amino acids, preferably approximately 1 to 10 amino acids, more preferably approximately several (1 to 5) amino acids) are inserted, or in which at least 1 or 2 amino acids (for example approximately 1 to 20 amino acids, preferably approximately 1 to 10 amino acids, more preferably approximately several (1 to 5) amino acids) are substituted by other amino acids.
The partial peptide of the present invention includes, for example, a peptide having an amino acid sequence in e.g. positions 1 to 28, 99 to 129, 180 to 193 or 246 to 286 in the amino acid sequence represented by SEQ ID NO: 1 or SEQ ID NO: 14, a peptide having an amino acid sequence in e.g. positions 40 to 60 or 330 to 350 in the amino acid sequence represented by SEQ ID NO: 18, a peptide having an amino acid sequence in e.g. positions 301 to 322, 941 to 952 or 1012 to 1028 in the amino acid sequence represented by SEQ ID NO: 42, a peptide having an amino acid sequence in e.g. positions 460 to 485 or 610 to 630 in the amino acid sequence represented by SEQ ID NO: 66, and a peptide having an amino acid sequence in e.g. positions 1 to 28, 99 to 129, 180 to 193 or 245 to 285 in the amino acid sequence represented by SEQ ID NO: 104.
In the partial peptide of the present invention, the C-terminus is usually in the form of a carboxyl group (—COOH) or a carboxylate (—COO−) but may be in the form of an amide (—CONH2) or an ester (—COOR) as described above with respect to the protein of the present invention.
Like the protein of the present invention, the partial peptide of the present invention includes those having a carboxyl group (or a carboxylate) at a position other than the C-terminus, those wherein an amino group of the N-terminal amino acid residue (e.g., methionine residue) is protected with a protecting group, those wherein the N-terminal region is cleaved in vivo and a glutamine reissue thus formed is pyroglutaminated, those wherein a substituent on the side chain of an amino acid in the molecule is protected with a suitable protecting group, or conjugated proteins such as glycoproteins having sugar chains bound thereto.
The partial peptide of the present invention can also be used as an antigen for preparing an antibody. For the purpose of preparing the antibody of the present invention, mention can be made of, for example, a peptide having an amino acid sequence in e.g. positions 1 to 28, 99 to 129, 180 to 193 or 246 to 286 in the amino acid sequence represented by SEQ ID NO: 1 or SEQ ID NO: 14, a peptide having an amino acid sequence in e.g. positions 40 to 60 or 330 to 350 in the amino acid sequence represented by SEQ ID NO: 18, a peptide having an amino acid sequence in e.g. positions 301 to 322, 941 to 952 or 1012 to 1028 in the amino acid sequence represented by SEQ ID NO: 42, a peptide having an amino acid sequence in e.g. positions 460 to 485 or 610 to 630 in the amino acid sequence represented by SEQ ID NO: 66, and a peptide having an amino acid sequence in e.g. positions 1 to 28, 99 to 129, 180 to 193 or 245 to 285 in the amino acid sequence represented by SEQ ID NO: 104.
As salts of the protein or partial peptide of the present invention, use is made of salts with physiologically acceptable acids (e.g., inorganic acids or organic acids) or bases (e.g., alkali metal salts), preferably physiologically acceptable acid addition salts. Examples of such salts are salts with inorganic acids (e.g., hydrochloric acid, phosphoric acid, hydrobromic acid, sulfuric acid), salts with organic acids (e.g., acetic acid, formic acid, propionic acid, fumaric acid, maleic acid, succinic acid, tartaric acid, citric acid, malic acid, oxalic acid, benzoic acid, methanesulfonic acid, benzenesulfonic acid) and the like.
The protein or partial peptide of the present invention or salts thereof may be manufactured from the human and other warm-blooded animal cells or tissues described above by a publicly known protein purification method, or by culturing a transformant that comprises the DNA encoding the protein of the present invention. Furthermore, the protein or partial peptide or salts thereof may also be manufactured by the peptide synthesis method, which will be described below.
Where the protein or its salts are manufactured from human and other mammalian tissues or cells, human or other mammalian tissues or cells are homogenized, then extracted with an acid or the like, and the extract is isolated and purified by a combination of chromatography techniques such as reverse phase chromatography, ion exchange chromatography, and the like.
To synthesize the protein of the present invention, its partial peptide, or salts or amides thereof according to the present invention, commercially available resins that are used for protein synthesis may be used. Examples of such resins include chloromethyl resin, hydroxymethyl resin, benzhydrylamine resin, aminomethyl resin, 4-benzyloxybenzyl alcohol resin, 4-methylbenzhydrylamine resin, PAM resin, 4-hydroxymethylmethylphenyl acetamidomethyl resin, polyacrylamide resin, 4-(2′,4′-dimethoxyphenylhydroxymethyl)phenoxy resin, 4-(2′,4′-dimethoxyphenyl-Fmoc-aminoethyl) phenoxy resin, etc. Using these resins, amino acids in which α-amino groups and functional groups on the side chains are appropriately protected are condensed on the resin in the order of the sequence of the objective protein according to various condensation methods publicly known in the art. At the end of the reaction, the protein is excised from the resin and at the same time, the protecting groups are removed. Then, intramolecular disulfide bond-forming reaction is performed in a highly diluted solution to obtain the objective protein or the partial peptide, or amides thereof.
For condensation of the protected amino acids described above, a variety of activation reagents for protein synthesis may be used, and carbodiimides are particularly preferable. Examples of such carbodiimides include DCC, N,N′-diisopropylcarbodiimide, N-ethyl-N′-(3-dimethylaminopropyl)carbodiimide, etc. For activation by these reagents, the protected amino acids in combination with a racemization inhibitor (e.g., HOBt, HOOBt) are added directly to the resin, or the protected amino acids are previously activated in the form of symmetric acid anhydrides, HOBt esters or HOOBt esters, followed by adding the thus activated protected amino acids to the resin.
Solvents suitable for use to activate the protected amino acids or condense with the resin may be appropriately chosen from solvents known to be usable for protein condensation reactions. Examples of such solvents are acid amides such as N,N-dimethylformamide, N,N-dimethylacetamide, N-methylpyrrolidone, etc.; halogenated hydrocarbons such as methylene chloride, chloroform, etc.; alcohols such as trifluoroethanol, etc.; sulfoxides such as dimethylsulfoxide, etc.; ethers such as pyridine, dioxane, tetrahydrofuran, etc.; nitriles such as acetonitrile, propionitrile, etc.; esters such as methyl acetate, ethyl acetate, etc.; and appropriate mixtures of these solvents. The reaction temperature is appropriately chosen from the range known to be applicable to protein binding reactions and is usually selected in the range of approximately −20° C. to 50° C. The activated amino acid derivatives are used generally in an excess of 1.5 to 4 times. The condensation is examined by a test using the ninhydrin reaction; when the condensation is insufficient, the condensation can be completed by repeating the condensation reaction without removal of the protecting groups. When the condensation is yet insufficient even after repeating the reaction, unreacted amino acids are acetylated with acetic anhydride or acetylimidazole to cancel any possible adverse effect on the subsequent reaction.
Examples of the protecting groups used to protect the amino groups of the starting materials include Z, Boc, t-pentyloxycarbonyl, isobornyloxycarbonyl, 4-methoxybenzyloxycarbonyl, Cl—Z, Br—Z, adamantyloxycarbonyl, trifluoroacetyl, phthaloyl, formyl, 2-nitrophenylsulphenyl, diphenylphosphinothioyl, Fmoc, etc.
A carboxyl group can be protected by, e.g., alkyl esterification (in the form of linear, branched or cyclic alkyl esters of the alkyl moiety such as methyl, ethyl, propyl, butyl, t-butyl, cyclopentyl, cyclohexyl, cycloheptyl, cyclooctyl, 2-adamantyl, etc.), aralkyl esterification (e.g., esterification in the form of benzyl ester, 4-nitrobenzyl ester, 4-methoxybenzyl ester, 4-chlorobenzyl ester, benzhydryl ester, etc.), phenacyl esterification, benzyloxycarbonyl hydrazidation, t-butoxycarbonyl hydrazidation, trityl hydrazidation, or the like.
The hydroxyl group of serine can be protected through, for example, its esterification or etherification. Examples of groups appropriately used for the esterification include a lower (C1-6) alkanoyl group, such as acetyl group, an aroyl group such as benzoyl group, and a group derived from carbonic acid such as benzyloxycarbonyl group, ethoxycarbonyl group, etc. Examples of a group appropriately used for the etherification include benzyl group, tetrahydropyranyl group, t-butyl group, etc.
Examples of groups for protecting the phenolic hydroxyl group of tyrosine include Bzl, Cl2-Bzl, 2-nitrobenzyl, Br—Z, t-butyl, etc.
Examples of groups used to protect the imidazole moiety of histidine include Tos, 4-methoxy-2,3,6-trimethylbenzenesulfonyl, DNP, benzyloxymethyl, Bum, Boc, Trt, Fmoc, etc.
Examples of the activated carboxyl groups in the starting materials include the corresponding acid anhydrides, azides, activated esters (esters with alcohols (e.g., pentachlorophenol, 2,4,5-trichlorophenol, 2,4-dinitrophenol, cyanomethyl alcohol, p-nitrophenol, HONB, N-hydroxysuccimide, N-hydroxyphthalimide, HOBt)). As the activated amino acids in which the amino groups are activated in the starting material, the corresponding phosphoric amides are employed.
To eliminate (split off) the protecting groups, there are used catalytic reduction under hydrogen gas flow in the presence of a catalyst such as Pd-black or Pd-carbon; an acid treatment with anhydrous hydrogen fluoride, methanesulfonic acid, trifluoromethane-sulfonic acid or trifluoroacetic acid, or a mixture solution of these acids; a treatment with a base such as diisopropylethylamine, triethylamine, piperidine or piperazine; and reduction with sodium in liquid ammonia. The elimination of the protecting group by the acid treatment described above is carried out generally at a temperature of approximately −20° C. to 40° C. In the acid treatment, it is efficient to add a cation scavenger such as anisole, phenol, thioanisole, m-cresol, p-cresol, dimethylsulfide, 1,4-butanedithiol or 1,2-ethanedithiol, which is activated by ligand. Furthermore, 2,4-dinitrophenyl group known as the protecting group for the imidazole of histidine is removed by a treatment with thiophenol. Formyl group used as the protecting group of the indole of tryptophan is eliminated by the aforesaid acid treatment in the presence of 1,2-ethanedithiol or 1,4-butanedithiol, as well as by a treatment with an alkali such as a dilute sodium hydroxide solution and dilute ammonia.
Protection of functional groups that should not be involved in the reaction of the starting materials, protecting groups, elimination of the protecting groups and activation of functional groups involved in the reaction may be appropriately selected from publicly known groups and publicly known means.
In another method for obtaining the amides of the protein or partial peptide, for example, the α-carboxyl group of the carboxy terminal amino acid is first protected by amidation, and the peptide (protein) chain is then extended from the amino group side to a desired length. Thereafter, a protein or partial peptide in which only the protecting group of the N-terminal α-amino group in the peptide chain has been eliminated from the protein and a protein or partial peptide in which only the protecting group of the C-terminal carboxyl group has been eliminated are prepared. The two proteins or peptides are condensed in a mixture of the solvents described above. The details of the condensation reaction are the same as described above. After the protected protein or peptide obtained by the condensation is purified, all the protecting groups are eliminated by the method described above to give the desired crude protein or peptide. This crude protein or peptide is purified by various known purification means. Lyophilization of the major fraction gives the amide of the desired protein or peptide.
To prepare the esterified protein or peptide, for example, the α-carboxyl group of the carboxy terminal amino acid is condensed with a desired alcohol to prepare the amino acid ester, which is followed by procedure similar to the preparation of the amidated protein or peptide above to give the ester form of the desired protein or peptide.
The partial peptide of the present invention or its salts can be manufactured by publicly known methods for peptide synthesis, or by cleaving the protein of the present invention with an appropriate peptidase. For the methods for peptide synthesis, for example, either solid phase synthesis or liquid phase synthesis may be used. That is, the partial peptide or amino acids that can construct the partial peptide of the present invention are condensed with the remaining part. Where the product contains protecting groups, these protecting groups are removed to give the desired peptide. Publicly known methods for condensation and elimination of the protecting groups are described in (a) to (e) below.
(a) M. Bodanszky & M. A. Ondetti: Peptide Synthesis, Interscience Publishers, New York (1966) (b) Schroeder & Luebke: The Peptide, Academic Press, New York (1965)(c) Nobuo Izumiya, et al.: Peptide Gosei-no-Kiso to Jikken (Basics and experiments of peptide synthesis), published by Maruzen Co. (1975)
(d) Haruaki Yajima & Shunpei Sakakibara: Seikagaku Jikken Koza (Biochemical Experiment) 1, Tanpakushitsu no Kagaku (Chemistry of Proteins) IV, 205 (1977)(e) Haruaki Yajima, ed.: Zoku lyakuhin no Kaihatsu (A sequel to Development of Pharmaceuticals), Vol. 14, Peptide Synthesis, published by Hirokawa Shoten
After completion of the reaction, the product may be purified and isolated by a combination of conventional purification methods such as solvent extraction, distillation, column chromatography, liquid chromatography and recrystallization to give the partial peptide of the present invention. When the partial peptide obtained by the above methods is in a free form, the peptide can be converted into an appropriate salt form by a publicly known method; when the partial peptide is obtained in a salt form, it can be converted into a free form by a publicly known method.
The polynucleotide encoding the protein of the present invention may be any polynucleotide so long as it comprises the base sequence encoding the protein of the present invention described above. The polynucleotide is preferably DNA. The DNA may also be any of genomic DNA, genomic cDNA library, cDNA derived from the cells or tissues described above, cDNA library derived from the cells or tissues described above, and synthetic DNA.
The vector to be used for the library may be any of bacteriophage, plasmid, cosmid, phagemid and the like. In addition, the DNA can be amplified by reverse transcriptase polymerase chain reaction (hereinafter abbreviated as RT-PCR) with total RNA or mRNA fraction prepared from the above-described cells or tissues.
The DNA encoding the protein of the present invention may be for example (1) DNA comprising the base sequence represented by SEQ ID NO: 2 or SEQ ID NO: 11, or DNA hybridizing under high stringent conditions with the base sequence represented by SEQ ID NO: 2 or SEQ ID NO: 11 and encoding a protein having properties substantially equivalent to those of a protein comprising the amino acid sequence represented by SEQ ID NO: 1, (2) DNA comprising the base sequence represented by SEQ ID NO: 13 or SEQ ID NO: 12, or DNA hybridizing under high stringent conditions with the base sequence represented by SEQ ID NO: 13 or SEQ ID NO: 12 and encoding a protein having properties substantially equivalent to those of a protein comprising the amino acid sequence represented by SEQ ID NO: 14, (3) DNA comprising the base sequence represented by SEQ ID NO: 105 or SEQ ID NO: 112, or DNA hybridizing under high stringent conditions with the base sequence represented by SEQ ID NO: 105 or SEQ ID NO: 112 and encoding a protein having properties substantially equivalent to those of a protein comprising the amino acid sequence represented by SEQ ID NO: 104, (4) DNA comprising the base sequence represented by SEQ ID NO: 19 or SEQ ID NO: 41, or DNA hybridizing under high stringent conditions with the base sequence represented by SEQ ID NO: 19 or SEQ ID NO: 41 and encoding a protein having properties substantially equivalent to those of a protein comprising the amino acid sequence represented by SEQ ID NO: 18, (5) DNA comprising the base sequence represented by SEQ ID NO: 43, SEQ ID NO: 60, SEQ ID NO: 61 or SEQ ID NO: 62, or DNA hybridizing under high stringent conditions with the base sequence represented by SEQ ID NO: 43, SEQ ID NO: 60, SEQ ID NO: 61 or SEQ ID NO: 62 and encoding a protein having properties substantially equivalent to those of a protein comprising the amino acid sequence represented by SEQ ID NO: 42, or (6) DNA comprising the base sequence represented by SEQ ID NO: 67 or SEQ ID NO: 103, or DNA hybridizing under high stringent conditions with the base sequence represented by SEQ ID NO: 67 or SEQ ID NO: 103 and encoding a protein having properties substantially equivalent to those of a protein comprising the amino acid sequence represented by SEQ ID NO: 66.
As the DNA hybridizing under high stringent conditions with the base sequence represented by SEQ ID NO: 2 or SEQ ID NO: 11, there may be employed e.g. DNA comprising a base sequence having at least about 50% homology, preferably at least about 60% homology, more preferably at least about 70% homology, still more preferably at least about 80% homology, further more preferably at least about 90% homology to the base sequence represented by SEQ ID NO: 2 or SEQ ID NO: 11.
As the DNA hybridizing under high stringent conditions with the base sequence represented by SEQ ID NO: 13 or SEQ ID NO: 12, there may be employed e.g. DNA comprising a base sequence having at least about 50% homology, preferably at least about 60% homology, more preferably at least about 70% homology, still more preferably at least about 80% homology, further more preferably at least about 90% homology to the base sequence represented by SEQ ID NO: 13 or SEQ ID NO: 12.
As the DNA hybridizing under high stringent conditions with the base sequence represented by SEQ ID NO: 105 or SEQ ID NO: 112, there may be employed e.g. DNA comprising a base sequence having at least about 75% homology, preferably at least about 80% homology, more preferably at least about 90% homology, still more preferably at least about 95% homology to the base sequence represented by SEQ ID NO: 105 or SEQ ID NO: 112.
As the DNA hybridizing under high stringent conditions with the base sequence represented by SEQ ID NO: 19 or SEQ ID NO: 41, there may be employed e.g. DNA comprising a base sequence having at least about 90% homology, preferably at least about 95% homology, more preferably at least about 97% homology, still more preferably at least about 99% homology to the base sequence represented by SEQ ID NO: 19 or SEQ ID NO: 41.
As the DNA hybridizing under high stringent conditions with the base sequence represented by SEQ ID NO: 43, SEQ ID NO: 60, SEQ ID NO: 61 or SEQ ID NO: 62, there may be employed e.g. DNA comprising a base sequence having at least about 96% homology, preferably at least about 97% homology, more preferably at least about 98% homology, still more preferably at least about 99% homology to the base sequence represented by SEQ ID NO: 43, SEQ ID NO: 60, SEQ ID NO: 61 or SEQ ID NO: 62.
As the DNA hybridizing under high stringent conditions with the base sequence represented by SEQ ID NO: 67 or SEQ ID NO: 103, there may be employed e.g. DNA comprising a base sequence having at least about 45% homology, preferably at least about 50% homology, more preferably at least about 70% homology, still more preferably at least about 80% homology, further more preferably at least about 90% homology still further more preferably at least about 95% homology to the base sequence represented by SEQ ID NO: 67 or SEQ ID NO: 103.
The hybridization can be carried out by publicly known methods or by modifications of these methods, for example, according to the method described in Molecular Cloning, 2nd (J. Sambrook et al., Cold Spring Harbor Lab. Press, 1989). A commercially available library may also be used according to the instructions of the attached manufacturer's protocol. Preferably, the hybridization can be carried out under highly stringent conditions.
The highly stringent conditions used herein are, for example, those in a sodium concentration at about 19 mM to about 40 mM, preferably about 19 mM to about 20 mM at a temperature of about 50° C. to about 70° C., preferably about 60° C. to about 65° C. In particular, hybridization conditions in a sodium concentration of about 19 mM at a temperature of about 65° C. are most preferred.
More specifically, as the DNA encoding a protein comprising the amino acid sequence represented by SEQ ID NO: 1, there may be employed, e.g. DNA comprising the base sequence represented by SEQ ID NO: 2 or SEQ ID NO: 11; as the DNA encoding a protein comprising the amino acid sequence represented by SEQ ID NO: 14, there may be employed, e.g. DNA comprising the base sequence represented by SEQ ID NO: 13 or SEQ ID NO: 12; as the DNA encoding a protein comprising the amino acid sequence represented by SEQ ID NO: 104, there may be employed, e.g. DNA comprising the base sequence represented by SEQ ID NO: 105 or SEQ ID NO: 112; as the DNA encoding a protein comprising the amino acid sequence represented by SEQ ID NO: 18, there may be employed, e.g. DNA comprising the base sequence represented by SEQ ID NO: 19 or SEQ ID NO: 41; as the DNA encoding a protein comprising the amino acid sequence represented by SEQ ID NO: 42, there may be employed, e.g. DNA comprising the base sequence represented by SEQ ID NO: 43, SEQ ID NO: 60, SEQ ID NO: 61 or SEQ ID NO: 62; and as the DNA encoding a protein comprising the amino acid sequence represented by SEQ ID NO: 66, there may be employed, e.g. DNA comprising the base sequence represented by SEQ ID NO: 67 or SEQ ID NO: 103.
The polynucleotide encoding the partial peptide of the present invention may be any polynucleotide so long as it comprises a base sequence encoding the partial peptide of the present invention described above. The polynucleotide is preferably DNA. The DNA may also be any of genomic DNA, genomic DNA library, cDNA derived from the cells and tissues described above, cDNA library derived from the cells and tissues described above and synthetic DNA.
As the DNA encoding the partial peptide of the present invention, there may be employed, for example, DNA having a part of DNA having the base sequence represented by SEQ ID NO: 2, SEQ ID NO: 11, SEQ ID NO: 12, SEQ ID NO: 13, SEQ ID NO: 19, SEQ ID NO: 41, SEQ ID NO: 43, SEQ ID NO: 60, SEQ ID NO: 61, SEQ ID NO: 62, SEQ ID NO: 67, SEQ ID NO: 103, SEQ ID NO: 105 or SEQ ID NO: 112, or DNA comprising a base sequence hybridizing under stringent conditions with the base sequence represented by SEQ ID NO: 2, SEQ ID NO: 11, SEQ ID NO: 12, SEQ ID NO: 13, SEQ ID NO: 19, SEQ ID NO: 41, SEQ ID NO: 43, SEQ ID NO: 60, SEQ ID NO: 61, SEQ ID NO: 62, SEQ ID NO: 67, SEQ ID NO: 103, SEQ ID NO: 105 or SEQ ID NO: 112 and comprising a part of DNA encoding a protein having an activity substantially equivalent to that of the protein of the present invention.
The DNA hybridizable with the base sequence represented by SEQ ID NO: 2, SEQ ID NO: 11, SEQ ID NO: 12, SEQ ID NO: 13, SEQ ID NO: 19, SEQ ID NO: 41, SEQ ID NO: 43, SEQ ID NO: 60, SEQ ID NO: 61, SEQ ID NO: 62, SEQ ID NO: 67, SEQ ID NO: 103, SEQ ID NO: 105 or SEQ ID NO: 112 has the same meaning as described above.
As the hybridization method and high stringent conditions, those described above are used.
For cloning of the DNA that completely encodes the protein of the present invention or its partial peptide (hereinafter sometimes merely referred to as the protein of the present invention), the DNA may be amplified by PCR using synthetic DNA primers comprising a part of the base sequence encoding the protein of the present invention, or the DNA inserted into an appropriate vector can be selected by hybridization with a labeled DNA fragment or synthetic DNA that encodes a part or entire region of the protein of the present invention. The hybridization can be carried out, for example, according to the method described in Molecular Cloning, 2nd, J. Sambrook et al., Cold Spring Harbor Lab. Press, 1989. The hybridization may also be performed using commercially available library in accordance with the protocol described in the attached instructions.
Conversion of the base sequence of the DNA can be effected by publicly known methods such as the ODA-LA PCR method, the gapped duplex method or the Kunkel method or its modification using a publicly known kit available as Mutan™-G or Mutan™-K (both manufactured by Takara Shuzo Co., Ltd.).
The cloned DNA encoding the protein can be used as it is, depending upon purpose or if desired after digestion with a restriction enzyme or after addition of a linker thereto. The DNA may have ATG as a translation initiation codon at the 5′ end thereof and may further have TAA, TGA or TAG as a translation termination codon at the 3′ end thereof. These translation initiation and termination codons may also be added by using an appropriate synthetic DNA adapter.
The expression vector for the protein of the present invention can be manufactured, for example, by (a) excising the desired DNA fragment from the DNA encoding the protein of the present invention, and then (b) ligating the DNA fragment to an appropriate expression vector downstream from a promoter in the vector.
Examples of the vector include plasmids derived form E. coli (e.g., pBR322, pBR325, pUC12, pUC13), plasmids derived from Bacillus subtilis (e.g., pUB110, pTP5, pC194), plasmids derived from yeast (e.g., pSH19, pSH15), bacteriophages such as λ phage, etc., animal viruses such as retrovirus, vaccinia virus, baculovirus, etc. as well as pA1-11, pXT1, pRc/CMV, pRc/RSV, pcDNAI/Neo, etc.
The promoter used in the present invention may be any promoter if it matches well with a host to be used for gene expression. In the case of using animal cells as the host, examples of the promoter include SRx promoter, SV40 promoter, LTR promoter, CMV promoter, HSV-TK promoter, etc.
Among them, CMV (cytomegalovirus) promoter or SRα promoter is preferably used. Where the host is bacteria of the genus Escherichia, preferred examples of the promoter include trp promoter, lac promoter, recA promoter, λPL promoter, lpp promoter, T7 promoter etc. In the case of using bacteria of the genus Bacillus as the host, preferred example of the promoter are SPO1 promoter, SPO2 promoter and penP promoter. When yeast is used as the host, preferred examples of the promoter are PHO5 promoter, PGK promoter, GAP promoter and ADH promoter. When insect cells are used as the host, preferred examples of the promoter include polyhedrin prompter and P10 promoter.
In addition to the foregoing examples, the expression vector may further optionally contain an enhancer, a splicing signal, a polyA addition signal, a selection marker, SV40 replication origin (hereinafter sometimes abbreviated as SV40ori) etc. Examples of the selection marker include dihydrofolate reductase (hereinafter sometimes abbreviated as dhfr) gene [methotrexate (MTX) resistance], ampicillin resistant gene (hereinafter sometimes abbreviated as Ampr), neomycin resistant gene (hereinafter sometimes abbreviated as Neor, G418 resistance), etc. In particular, when dhfr gene is used as the selection marker in dhfr gene-deficient Chinese hamster's cells, selection can also be made on thymidine free media.
If necessary and desired, a signal sequence that matches with a host is added to the N-terminus of the protein of the present invention. Examples of the signal sequence that can be used are PhoA signal sequence, OmpA signal sequence, etc. in the case of using bacteria of the genus Escherichia as the host; α-amylase signal sequence, subtilisin signal sequence, etc. in the case of using bacteria of the genus Bacillus as the host; MFα signal sequence, SUC2 signal sequence, etc. in the case of using yeast as the host; and insulin signal sequence, α-interferon signal sequence, antibody molecule signal sequence, etc. in the case of using animal cells as the host, respectively.
Using the vector comprising the DNA encoding the protein of the present invention thus constructed, transformants can be manufactured.
Examples of the host, which may be employed, are bacteria belonging to the genus Escherichia, bacteria belonging to the genus Bacillus, yeast, insect cells, insects and animal cells, etc.
Specific examples of the bacteria belonging to the genus Escherichia include Escherichia coli K12 DH1 (Proc. Natl. Acad. Sci. U.S.A., 60, 160 (1968)), JM103 (Nucleic Acids Research, 9, 309 (1981)), JA221 (Journal of Molecular Biology, 120, 517 (1978)), HB101 (Journal of Molecular Biology, 41, 459 (1969)), C600 (Genetics, 39, 440 (1954)), etc.
Examples of the bacteria belonging to the genus Bacillus include Bacillus subtilis MI114 (Gene, 24, 255 (1983)), 207-21 (Journal of Biochemistry, 95, 87 (1984)), etc.
Examples of yeast include Saccharomyces cereviseae AH22, AH22R−, NA87-11A, DKD-5D, 20B-12, Schizosaccharomyces pombe NCYC1913, NCYC2036, Pichia pastoris KM71, etc.
Examples of insect cells include, for the virus AcNPV, Spodoptera frugiperda cells (Sf cells), MG1 cells derived from mid-intestine of Trichoplusia ni, HIGH FIVE™ (BTI-Tn-5B1-4) cells derived from egg of Trichoplusia ni, cells derived from Mamestra brassicae, cells derived from Estigmena acrea, etc.; and for the virus BmNPV, Bombyx mori N cells (BmN cells), etc. are used. Examples of the Sf cell which can be used are Sf9 cells (ATCC CRL1711) and Sf21 cells (both cells are described in Vaughn, J. L. et al., In Vivo, 13, 213-217 (1977).
As the insect, for example, a larva of Bombyx mori can be used (Maeda, et al., Nature, 315, 592 (1985)).
Examples of animal cells include monkey cells COS-7, Vero, Chinese hamster cells CHO (hereinafter referred to as CHO cells), dhfr gene deficient Chinese hamster cells CHO (hereinafter simply referred to as CHO(dhfr−) cell), mouse L cells, mouse AtT-20, mouse myeloma cells, rat GH3, human FL cells, etc.
Bacteria belonging to the genus Escherichia can be transformed, for example, by the method described in Proc. Natl. Acad. Sci. U.S.A., 69, 2110 (1972) or Gene, 17, 107 (1982).
Bacteria belonging to the genus Bacillus can be transformed, for example, by the method described in Molecular & General Genetics, 168, 111 (1979).
Yeast can be transformed, for example, by the method described in Methods in Enzymology, 194, 182-187 (1991), Proc. Natl. Acad. Sci. U.S.A., 75, 1929 (1978), etc.
Insect cells or insects can be transformed, for example, according to the method described in Bio/Technology, 6, 47-55 (1988), etc.
Animal cells can be transformed, for example, according to the method described in Saibo Kogaku (Cell Engineering), extra issue 8, Shin Saibo Kogaku Jikken Protocol (New Cell Engineering Experimental Protocol), 263-267 (1995), published by Shujunsha, or Virology, 52, 456 (1973).
Thus, the transformant transformed with the expression vector comprising the DNA encoding the protein can be obtained.
Where the host is bacteria belonging to the genus Escherichia or the genus Bacillus, the transformant can be appropriately incubated in a liquid medium which contains materials required for growth of the transformant such as carbon sources, nitrogen sources, inorganic materials, and so on. Examples of the carbon sources include glucose, dextrin, soluble starch, sucrose, etc. Examples of the nitrogen sources include inorganic or organic materials such as ammonium salts, nitrate salts, corn steep liquor, peptone, casein, meat extract, soybean cake, potato extract, etc. Examples of the inorganic materials are calcium chloride, sodium dihydrogenphosphate, magnesium chloride, etc. In addition, yeast extract, vitamins, growth promoting factors etc. may also be added to the medium. Preferably, pH of the medium is adjusted to about 5 to about 8.
A preferred example of the medium for incubation of the bacteria belonging to the genus Escherichia is M9 medium supplemented with glucose and Casamino acids (Miller, Journal of Experiments in Molecular Genetics, 431-433, Cold Spring Harbor Laboratory, New York, 1972). If necessary and desired, a chemical such as 3β-indolylacrylic acid can be added to the medium to activate the promoter efficiently.
Where the bacteria belonging to the genus Escherichia are used as the host, the transformant is usually cultivated at about 15° C. to about 43° C. for about 3 hours to about 24 hours. If necessary and desired, the culture may be aerated or agitated.
Where the bacteria belonging to the genus Bacillus are used as the host, the transformant is cultivated generally at about 30° C. to about 40° C. for about 6 hours to about 24 hours. If necessary and desired, the culture can be aerated or agitated.
Where yeast is used as the host, the transformant is cultivated, for example, in Burkholder's minimal medium (Bostian, K. L. et al., Proc. Natl. Acad. Sci. U.S.A., 77, 4505 (1980)) or in SD medium supplemented with 0.5% Casamino acids (Bitter, G. A. et al., Proc. Natl. Acad. Sci. U.S.A., 81, 5330 (1984)). Preferably, pH of the medium is adjusted to about 5 to about 8. In general, the transformant is cultivated at about 20° C. to about 35° C. for about 24 hours to about 72 hours. If necessary and desired, the culture can be aerated or agitated.
Where insect cells or insects are used as the host, the transformant is cultivated in, for example, Grace's Insect Medium (Grace, T. C. C., Nature, 195, 788 (1962)) to which an appropriate additive such as immobilized 10% bovine serum is added. Preferably, pH of the medium is adjusted to about 6.2 to about 6.4. Normally, the transformant is cultivated at about 27° C. for about 3 days to about 5 days and, if necessary and desired, the culture can be aerated or agitated.
Where animal cells are employed as the host, the transformant is cultivated in, for example, MEM medium containing about 5% to about 20% fetal bovine serum (Science, 122, 501 (1952)), DMEM medium (Virology, 8, 396 (1959)), RPMI 1640 medium (The Journal of the American Medical Association, 199, 519 (1967)), 199 medium (Proceeding of the Society for the Biological Medicine, 73, 1 (1950)), etc. Preferably, pH of the medium is adjusted to about 6 to about 8. The transformant is usually cultivated at about 30° C. to about 40° C. for about 15 hours to about 60 hours and, if necessary and desired, the culture can be aerated or agitated.
As described above, the protein of the present invention can be produced in the cell, in the cell membrane or out of the cell of the transformant.
The protein of the present invention can be separated and purified from the culture described above by the following procedures.
When the protein of the present invention is extracted from the culture or cells after cultivation, the transformants or cells are collected by a publicly known method and suspended in an appropriate buffer. The transformants or cells are then disrupted by publicly known methods such as ultrasonication, a treatment with lysozyme and/or freeze-thaw cycling, followed by centrifugation, filtration, etc. Thus, the crude extract of the protein of the present invention can be obtained. The buffer used for the procedures may contain a protein modifier such as urea or guanidine hydrochloride, or a surfactant such as TRITON X-100™ (Polyoxyethylene (10) Octylphenyl Ether), etc. When the protein is secreted in the culture, the supernatant after completion of the cultivation can be separated from the transformants or cells to collect the supernatant by a publicly known method.
The protein contained in the supernatant or the extract thus obtained can be purified by appropriately combining the publicly known methods for separation and purification. Such publicly known methods for separation and purification include a method utilizing difference in solubility such as salting out, solvent precipitation, etc.; a method utilizing mainly difference in molecular weight such as dialysis, ultrafiltration, gel filtration, SDS-polyacrylamide gel electrophoresis, etc.; a method utilizing difference in electric charge such as ion exchange chromatography, etc.; a method utilizing difference in specific affinity such as affinity chromatography, etc.; a method utilizing difference in hydrophobicity such as reverse phase high performance liquid chromatography, etc.; a method utilizing difference in isoelectric point such as isoelectrofocusing electrophoresis; and the like.
When the protein thus obtained is in a free form, it can be converted into the salt by publicly known methods or modifications thereof. On the other hand, when the protein is obtained in the form of a salt, it can be converted into the free form or in the form of a different salt by publicly known methods or modifications thereof.
The protein produced by the recombinant can be treated, prior to or after the purification, with an appropriate protein-modifying enzyme so that the protein can be appropriately modified to partially remove a polypeptide. Examples of the protein-modifying enzyme include trypsin, chymotrypsin, arginyl endopeptidase, protein kinase, glycosidase or the like.
The activity of the thus produced protein of the present invention or salts thereof can be determined by a test binding to a labeled ligand, by an enzyme immunoassay using a specific antibody, or the like.
Antibodies to the protein of the present invention, its partial peptides, or salts thereof may be any of polyclonal antibodies and monoclonal antibodies as long as they are capable of recognizing the protein of the present invention, its partial peptides, or salts thereof.
The antibodies to the protein of the present invention, its partial peptides, or salts thereof (hereinafter sometimes collectively referred to as the protein of the present invention) may be manufactured by publicly known methods for manufacturing antibodies or antisera, using as antigens the protein of the present invention.
[Preparation of Monoclonal Antibody] (a) Preparation of Monoclonal Antibody-Producing CellsThe protein of the present invention is administered to mammals either solely or together with carriers or diluents to the site where the production of antibody is possible by the administration. In order to potentiate the antibody productivity upon the administration, complete Freund's adjuvants or incomplete Freund's adjuvants may be administered. The administration is usually carried out once in every two to six weeks and 2 to 10 times in total. Examples of the applicable warm-blooded animals are monkeys, rabbits, dogs, guinea pigs, mice, rats, sheep, goats and chickens, with mice and rats being preferred.
In the preparation of monoclonal antibody-producing cells, warm-blooded animals, e.g., mice, immunized with an antigen wherein the antibody titer is noted is selected, then the spleen or lymph node is collected after 2 to 5 days from the final immunization and antibody-producing cells contained therein are fused with myeloma cells from an animal of the same or different species to give monoclonal antibody-producing hybridomas. Measurement of the antibody titer in antisera may be made, for example, by reacting a labeled form of the protein, which will be described later, with the antiserum followed by assaying the binding activity of the labeling agent bound to the antibody. The fusion may be operated, for example, by the known Koehler and Milstein method (Nature, 256, 495, 1975). Examples of the fusion accelerator are polyethylene glycol (PEG), Sendai virus, etc., among which PEG is preferably employed.
Examples of the myeloma cells are warm-blooded animal myeloma cells such as NS-1, P3U1, SP2/0, AP-1 etc., among which P3U1 is particularly preferably employed. A preferred ratio of the count of the antibody-producing cells used (spleen cells) to the count of myeloma cells is within a range of approximately 1:1 to 20:1. When PEG (preferably, PEG 1000 to PEG 6000) is added in a concentration of approximately 10 to 80% followed by incubation at about 20 to about 40° C., preferably at about 30 to about 37° C. for about 1 to about 10 minutes, an efficient cell fusion can be carried out.
Various methods can be used for screening of a monoclonal antibody-producing hybridoma. Examples of such methods include a method which comprises adding the supernatant of hybridoma to a solid phase (e.g., microplate) adsorbed with the protein etc. as an antigen directly or together with a carrier, adding an anti-immunoglobulin antibody (when mouse cells are used for the cell fusion, anti-mouse immunoglobulin antibody is used) labeled with a radioactive substance or an enzyme, or Protein A and detecting the monoclonal antibody bound to the solid phase, and a method which comprises adding the supernatant of hybridoma to a solid phase adsorbed with an anti-immunoglobulin antibody or Protein A, adding the protein labeled with a radioactive substance or an enzyme and detecting the monoclonal antibody bound to the solid phase.
The monoclonal antibody can be selected by publicly known methods or by modifications of these methods. In general, the selection can be effected in a medium for animal cells supplemented with HAT (hypoxanthine, aminopterin and thymidine). Any selection and growth medium can be employed as far as the hybridoma can grow therein. For example, RPMI 1640 medium containing 1% to 20%, preferably 10% to 20% fetal bovine serum, GIT medium (Wako Pure Chemical Industries, Ltd.) containing 1% to 10% fetal bovine serum, a serum free medium for cultivation of a hybridoma (SFM-101, Nissui Seiyaku Co., Ltd.) and the like can be used for the selection and growth medium. The cultivation is carried out generally at 20° C. to 40° C., preferably at about 37° C., for 5 days to 3 weeks, preferably 1 to 2 weeks. The cultivation can be conducted normally in 5% CO2. The antibody titer of the culture supernatant of hybridomas can be determined as in the assay for the antibody titer in antisera described above.
(b) Purification of Monoclonal AntibodySeparation and purification of a monoclonal antibody can be carried out by methods applied to conventional separation and purification of immunoglobulins, as in the conventional methods for separation and purification of polyclonal antibodies [e.g., salting-out, alcohol precipitation, isoelectric point precipitation, electrophoresis, adsorption and desorption with ion exchangers (e.g., DEAE), ultracentrifugation, gel filtration, or a specific purification method which comprises collecting only an antibody with an activated adsorbent such as an antigen-binding solid phase, Protein A, Protein G, etc. and dissociating the binding to obtain the antibody].
[Preparation of Polyclonal Antibody]The polyclonal antibody of the present invention can be manufactured by publicly known methods or modifications thereof. For example, an immunogen (antigen such as the protein) itself or a complex prepared from an immunogen and a carrier protein is used to immunize a warm-blooded animal a manner similar to the method described above for the manufacture of monoclonal antibodies. The product containing the antibody to the protein of the present invention is collected from the immunized animal followed by separation and purification of the antibody.
In the complex of an immunogen and a carrier protein used to immunize a warm-blooded animal, the type of carrier protein and the mixing ratio of a carrier to hapten may be any type and in any ratio, as long as the antibody is efficiently produced to the hapten immunized by crosslinking to the carrier. For example, bovine serum albumin, bovine thyroglobulins, hemocyanin, etc. is coupled to hapten in a carrier-to-hapten weight ratio of approximately 0.1 to 20, preferably about 1 to about 5.
A variety of condensing agents can be used for the coupling of a carrier to hapten. Glutaraldehyde, carbodiimide, maleimide-activated ester, activated ester reagents containing thiol group or dithiopyridyl group, etc. are used for the coupling.
The condensation product is administered to warm-blooded animals either solely or together with carriers or diluents to the site in which the antibody can be produce by the administration. In order to potentiate the antibody productivity upon the administration, complete Freund's adjuvant or incomplete Freund's adjuvant may be administered. The administration is usually made once approximately in every 2 to 6 weeks and about 3 to about 10 times in total.
The polyclonal antibody can be collected from the blood, ascites, etc., preferably from the blood of warm-blooded animals immunized by the method described above.
The polyclonal antibody titer in antiserum can be assayed by the same procedure as that for the determination of serum antibody titer described above. The separation and purification of the polyclonal antibody can be carried out, following the method for the separation and purification of immunoglobulins performed as applied to the separation and purification of monoclonal antibodies described hereinabove.
The antisense polynucleotide having a complementary or substantially complementary base sequence, or a part of thereof, to the DNA encoding the protein or partial peptide of the present invention (which in the following description of the antisense polynucleotide, is referred to sometimes as the DNA of the present invention) can be any antisense polynucleotide so long as it possesses a complementary or substantially complementary base sequence, or a part thereof, to that of the DNA of the present invention and capable of suppressing expression of the DNA. The antisense polynucleotide is preferably antisense DNA.
The base sequence substantially complementary to the DNA of the present invention includes, for example, a base sequence having at least about 70% homology, preferably at least about 80% homology, more preferably at least about 90% homology and most preferably at least about 95% homology, to the full-length base sequence or partial base sequence of the base sequence complementary to the DNA of the present invention (i.e., complementary strand to the DNA of the present invention). The base sequence substantially complementary to the DNA of the present invention is particularly an antisense polynucleotide having at least about 70% homology, preferably at least about 80% homology, more preferably at least about 90% homology and most preferably at least about 95% homology to the complementary strand of the base sequence encoding the N-terminal site of the protein of the present invention (e.g., the base sequence around the initiation codon), in the entire base sequence of the complementary strand to the DNA of the present invention.
Specifically, the base sequence substantially complementary to the DNA of the present invention is an antisense polynucleotide having a complementary or substantially complementary base sequence, or a part thereof, to the base sequence of DNA having the base sequence represented by SEQ ID NO: 2, SEQ ID NO: 11, SEQ ID NO: 12, SEQ ID NO: 13, SEQ ID NO: 19, SEQ ID NO: 41, SEQ ID NO: 43, SEQ ID NO: 60, SEQ ID NO: 61, SEQ ID NO: 62, SEQ ID NO: 67, SEQ ID NO: 103, SEQ ID NO: 105 or SEQ ID NO: 112, preferably an antisense polynucleotide having a complementary or substantially complementary base sequence, or a part thereof, to the base sequence of DNA having the base sequence represented by SEQ ID NO: 2, SEQ ID NO: 11, SEQ ID NO: 12, SEQ ID NO: 13, SEQ ID NO: 19, SEQ ID NO: 41, SEQ ID NO: 43, SEQ ID NO: 60, SEQ ID NO: 61, SEQ ID NO: 62, SEQ ID NO: 67, SEQ ID NO: 103, SEQ ID NO: 105 or SEQ ID NO: 112.
The antisense polynucleotide is composed of usually about 10 to 40 bases, preferably about 15 to 30 bases.
For preventing degradation by hydrolases such as nuclease etc., phosphoric acid residues (phosphates) of nucleotides constituting the antisense DNA may be substituted by chemically modified phosphoric acid residues such as phosphorothioate, methylphosphonate, phosphorodithionate etc. These antisense polynucleotides can be manufactured by a publicly known DNA synthesizer and the like.
According to the present invention, antisense polynucleotides (nucleic acids) which can inhibit the replication or expression of the gene for the protein of the present invention and which correspond to the gene can be designed and synthesized based on the base sequence information of the cloned or determined DNA encoding the protein. Such antisense polynucleotide is capable of hybridizing with RNA of the protein gene of the present invention to inhibit the synthesis or function of said RNA or capable of modulating or controlling the expression of the protein gene of the invention via interaction with the protein-associated RNA of the invention. Polynucleotides complementary to the selected sequences of the protein-RNA of the invention, and polynucleotides specifically hybridizable with the protein-associated RNA of the invention, are useful in modulating or controlling the expression of the protein gene of the invention in vivo and in vitro, and useful for the treatment or diagnosis of diseases. The term “corresponding” is used to mean homologous to or complementary to a particular sequence of the nucleotide, base sequence or nucleic acid including the gene. The term “corresponding” between nucleotides, base sequences or nucleic acids and proteins usually refer to amino acids of a protein under the order derived from the sequence of nucleotides (nucleic acids) or their complements. In the protein genes, the 5′ end hairpin loop, 5′ end 6-base-pair repeats, 5′ end untranslated region, polypeptide translation initiation codon, protein coding region, ORF translation termination codon, 3′ end untranslated region, 3′ end palindrome region, and 3′ end hairpin loop, may be selected as preferred target regions, though any other region may be selected as a target in the protein genes.
The relationship between the targeted nucleic acids and the polynucleotides complementary to at least a part of the target, or the relationship between the target and the polynucleotides hybridizable with the target, can be denoted to be “antisense”. Examples of the antisense polynucleotides include polydeoxynucleotides containing 2-deoxy-D-ribose, polynucleotides containing D-ribose, any other type of polynucleotides which are N-glycosides of a purine or pyrimidine base, or other polymers containing non-nucleotide backbones (e.g., protein nucleic acids and synthetic sequence-specific nucleic acid polymers commercially available) or other polymers containing nonstandard linkages (provided that the polymers contain nucleotides having such a configuration that allows base pairing or base stacking, as is found in DNA or RNA), etc. The antisense polynucleotides may be double-stranded DNA, single-stranded DNA, double-stranded RNA, single-stranded RNA or a DNA:RNA hybrid, and may further include unmodified polynucleotides (or unmodified oligonucleotides), those with publicly known types of modifications, for example, those with labels known in the art, those with caps, methylated polynucleotides, those with substitution of one or more naturally occurring nucleotides by their analogue, those with intramolecular modifications of nucleotides such as those with uncharged linkages (e.g., methyl phosphonates, phosphotriesters, phosphoramidates, carbamates, etc.) and those with charged linkages or sulfur-containing linkages (e.g., phosphorothioates, phosphorodithioates, etc.), those having side chain groups such as proteins (nucleases, nuclease inhibitors, toxins, antibodies, signal peptides, poly-L-lysine, etc.), saccharides (e.g., monosaccharides, etc.), those with intercalators (e.g., acridine, psoralen, etc.), those containing chelators (e.g., metals, radioactive metals, boron, oxidative metals, etc.), those containing alkylating agents, those with modified linkages (e.g., α anomeric nucleic acids, etc.), and the like. Herein the terms “nucleoside”, “nucleotide” and “nucleic acid” are used to refer to moieties that contain not only the purine and pyrimidine bases, but also other heterocyclic bases, which have been modified. Such modifications may include methylated purines and pyrimidines, acylated purines and pyrimidines and other heterocyclic rings. Modified nucleotides and modified nucleotides also include modifications on the sugar moiety, wherein, for example, one or more hydroxyl groups may optionally be substituted with a halogen atom(s), an aliphatic group(s), etc., or may be converted into the corresponding functional groups such as ethers, amines, or the like.
The antisense polynucleotide of the present invention is RNA, DNA or a modified nucleic acid (RNA, DNA). Specific examples of the modified nucleic acid include, but are not limited to, sulfur and thiophosphate derivatives of nucleic acids and those resistant to degradation of polynucleoside amides or oligonucleoside amides. The antisense polynucleotides of the present invention can be modified preferably based on the following design, that is, by increasing the intracellular stability of the antisense polynucleotide, increasing the cellular permeability of the antisense polynucleotide, increasing the affinity of the polynucleotide to the targeted sense strand to a higher level, or minimizing the toxicity, if any, of the antisense polynucleotide. Many of such modifications are reported for example in Pharm. Tech. Japan, Vol. 8, p. 247 or 395, 1992, Antisense Research and Applications, CRC Press, 1993, etc.
The antisense polynucleotide of the present invention may contain altered or modified sugars, bases or linkages. The antisense polynucleotide may also be provided in a specialized form such as liposomes, microspheres, or may be applied to gene therapy, or may be provided in combination with attached moieties. Such attached moieties include polycations such as polylysine that act as charge neutralizers of the phosphate backbone, or hydrophobic moieties such as lipids (e.g., phospholipids, cholesterols, etc.) that enhance the interaction with cell membranes or increase uptake of the nucleic acid. Preferred examples of the lipids to be attached are cholesterols or derivatives thereof (e.g., cholesteryl chloroformate, cholic acid, etc.). These moieties may be attached to the nucleic acid at the 3′ or 5′ ends thereof and may also be attached thereto through a base, sugar, or intramolecular nucleoside linkage. Other moieties may be capping groups specifically placed at the 3′ or 5′ ends of the nucleic acid to prevent degradation by nucleases such as exonuclease, RNase, etc. Such capping groups include, but are not limited to, hydroxyl protecting groups known in the art, including glycols such as polyethylene glycol, tetraethylene glycol and the like.
The inhibitory action of the antisense polynucleotide can be examined using the transformant of the present invention, the gene expression system of the present invention in vivo and in vitro, or the translation system of the protein of the present invention in vivo and in vitro.
Hereinafter, the protein of the present invention, its partial peptides, or salts thereof (hereinafter sometimes referred to as the protein of the present invention), the DNA encoding the protein of the present invention or its partial peptides (hereinafter sometimes referred to as the DNA of the present invention), the antibodies to the protein of the present invention, its partial peptides, or salts thereof (hereinafter sometimes referred to as the antibodies of the present invention) and the antisense polynucleotide of the DNA of the present invention (hereinafter sometimes referred to as the antisense polynucleotide of the present invention) are specifically described for the use or applications.
The protein comprising an amino acid sequence identical or substantially identical with the amino acid sequence represented by SEQ ID NO: 1, SEQ ID NO: 14 or SEQ ID NO: 104 is sometimes referred to “protein A of the present invention”; the protein comprising an amino acid sequence identical or substantially identical with the amino acid sequence represented by SEQ ID NO: 18 is sometimes referred to “protein B of the present invention”; the protein comprising an amino acid sequence identical or substantially identical with the amino acid sequence represented by SEQ ID NO: 42 is sometimes referred to “protein C of the present invention”; and the protein comprising an amino acid sequence identical or substantially identical with the amino acid sequence represented by SEQ ID NO: 66 is sometimes referred to “protein D of the present invention”.
[1] Prophylactic and/or Therapeutic Agents for Diseases Associated with the Protein of the Present Invention
The protein A of the present invention contributes to transport of a substrate, and plays an important role in metabolism of the substrate, etc. Hereinafter, the substrate of the protein A of the present invention is referred to sometimes as “substrate A”.
The substrate A includes, for example, steroid hormone, bile acid etc.
The steroid hormone includes, for example, estrogen, progestogen, androgen, mineral corticoid, glucocorticoid, steroid chemicals or metabolites thereof (e.g., sulfate conjugates, glucuronide conjugates etc.) etc. In particular, steroid hormone or metabolites thereof are preferable. Estrogen or androgen or metabolites thereof (preferably sulfate conjugates etc.) are more preferable. Estrone, dehydroepiandrosterone or sulfate conjugates thereof are most preferable.
The estrogen includes, for example, estrone, estradiol, estriol, estetrol etc.
The progestogen includes, for example, progesterone, pregnanediol etc.
The androgen includes, for example, dehydroepiandrosterone, testosterone, androstanedione, 5α-dihydrotestosterone, androsterone etc.
The mineral corticoid includes, for example, aldosterone etc.
The glucocorticoid includes, for example, cortisol, cortisone, corticosterone, dehydrocorticosterone etc.
The steroid chemicals include, for example, dexamethasone, betamethasone, prednisolone, triamcinolone, fluorocortisone, clomiphene, tamoxifen, danazol etc.
The bile acid includes, for example, taurocholic acid, glicocholic acid, cholic acid, lithocholic acid, deoxycholic acid, taurodeoxycholic acid, tauroursodeoxycholic acid, chenodeoxycholic acid, glicochenodeoxycholic acid, glicodeoxycholic acid etc.
Accordingly, when DNA encoding the protein A of the present invention is abnormal or deficient or when the amount of the protein A of the invention expressed is reduced, there occur various diseases such as hyperlipemia, genital diseases (e.g., prostatic hypertrophy, prostatitis, testis neurosis, ovarian cystoma etc.), digestive diseases (e.g., irritable bowel syndrome, ulcerous colitis, Crohn's disease, ischemic colitis, gastritis, digestive ulcer, rectitis, reflux esophagitis, duodenitis etc.), respiratory diseases (e.g., chronic obstructive pulmonary disease, bronchial asthma etc.), autoimmune diseases (e.g., myasthenia gravis, glomerulonephritis, multiple sclerosis, Sjogren's syndrome, systemic lupus erythematosus etc.), allergic diseases (e.g., pollinosis, allergic rhinitis, anaphylactic shock, atopic dermatitis etc.), rheumatoid diseases (e.g., chronic articular rheumatism, osteoarthritis, gout etc.), thymic diseases, immune disorders (e.g., immune disorders accompanying leukocyte abnormalities, spleen function insufficiency or thymic abnormalities), diabetes, hypothyroidism, circulatory diseases (e.g., cardiac insufficiency, arrhythmia, long QT syndrome, arteriosclerosis, angina etc.), pancreatic diseases (e.g., pancreatic function insufficiency such as pancreatitis, pancreatic cystic fibrosis etc.), cancers (e.g., testis tumor, ovarian cancer, breast cancer, esophagus cancer, lung cancer, kidney cancer, hepatoma, non-small cell lung cancer, prostate cancer, stomach cancer, bladder cancer, uterine cervix cancer, colon cancer, rectum cancer, pancreatic cancer, thymoma, myoma etc.) etc.
Accordingly, the protein A of the invention and the DNA encoding it can be used as safe medicines such as prophylactic/therapeutic agents for diseases such as hyperlipemia, genital diseases (e.g., prostatic hypertrophy, prostatitis, testis neurosis, ovarian cystoma etc.), digestive diseases (e.g., irritable bowel syndrome, ulcerous colitis, Crohn's disease, ischemic colitis, gastritis, digestive ulcer, rectitis, reflux esophagitis, duodenitis etc.), respiratory diseases (e.g., chronic obstructive pulmonary disease, bronchial asthma etc.), autoimmune diseases (e.g., myasthenia gravis, glomerulonephritis, multiple sclerosis, Sjogren's syndrome, systemic lupus erythematosus etc.), allergic diseases (e.g., pollinosis, allergic rhinitis, anaphylactic shock, atopic dermatitis etc.), rheumatoid diseases (e.g., chronic articular rheumatism, osteoarthritis, gout etc.), thymic diseases, immune disorders (e.g., immune disorders accompanying leukocyte abnormalities, spleen function insufficiency or thymic abnormalities), diabetes, hypothyroidism, circulatory diseases (e.g., cardiac insufficiency, arrhythmia, long QT syndrome, arteriosclerosis, angina etc.), pancreatic diseases (e.g., pancreatic function insufficiency such as pancreatitis, pancreatic cystic fibrosis etc.), cancers (e.g., testis tumor, ovarian cancer, breast cancer, esophagus cancer, lung cancer, kidney cancer, hepatoma, non-small cell lung cancer, prostate cancer, stomach cancer, bladder cancer, uterine cervix cancer, colon cancer, rectum cancer, pancreatic cancer, thymoma, myoma etc.) etc., preferably hyperlipemia, arteriosclerosis, genital diseases, digestive diseases etc.
For example, when there is a patient who cannot sufficiently or normally exhibit an activity of transporting substrate A because of a decrease or deficiency in the protein A of the present invention in the living body, (i) DNA encoding the protein A of the invention is administered into the patient to express the protein A of the invention in the living body, (ii) the DNA is inserted into target cells to express the protein A of the invention and the cells are transplanted to the patient, or (iii) the protein A of the invention is administered into the patient, whereby the role of the protein of the invention can be exhibited sufficiently or normally in the patient.
The protein B of the present invention has a cation (preferably monovalent cation such as Na+, K+, etc.)/H+ exchange transport activity, and plays an important role in regulation of intracellular pH, regulation of cell volume, and re-absorption of Na+ into the kidney and small intestine.
Accordingly, when DNA encoding the protein B of the present invention is abnormal or deficient or when the amount of the protein B of the invention expressed is reduced, there occur various diseases such as renal diseases (e.g., renal insufficiency, uremia etc.), digestive diseases (e.g., irritable bowel syndrome, ulcerous colitis, Crohn's disease, ischemic colitis, gastritis, digestive ulcer, rectitis, reflux esophagitis, duodenitis etc.), respiratory diseases (e.g., chronic obstructive pulmonary disease, asthma etc.), pancreatic diseases (e.g., pancreatic function insufficiency such as pancreatitis, pancreatic cystic fibrosis etc.), autoimmune diseases (e.g., myasthenia gravis, glomerulonephritis, multiple sclerosis, Sjogren's syndrome, systemic lupus erythematosus etc.), allergic diseases (e.g., pollinosis, allergic rhinitis, anaphylactic shock, atopic dermatitis etc.), rheumatoid diseases (e.g., chronic articular rheumatism, osteoarthritis, gout etc.), thymic diseases, immune disorders (e.g., immune disorders accompanying leukocyte abnormalities, spleen function insufficiency or thymic abnormalities), genital diseases (e.g., prostatic hypertrophy, prostatitis, testis neurosis, ovarian cystoma etc.), spleen diseases, cancers (e.g., testis tumor, ovarian cancer, breast cancer, esophagus cancer, lung cancer, kidney cancer, hepatoma, non-small cell lung cancer, prostate cancer, stomach cancer, bladder cancer, uterine cervix cancer, colon cancer, rectum cancer, pancreatic cancer, thymoma, myoma etc.), diabetes, hypertension, ischemia-reperfusion injury, central nerve diseases (e.g., Alzheimer's disease, Parkinson's syndrome, schizophrenia, cerebral vascular dementia, cerebral ischemia, epilepsy etc.) etc. Preferably, there occur many diseases such as respiratory diseases, renal diseases, digestive diseases etc.
Accordingly, the protein B of the present invention and DNA encoding the same can be used as safe medicines such as prophylactic/therapeutic agents for renal diseases (e.g., renal insufficiency, uremia etc.), digestive diseases (e.g., irritable bowel syndrome, ulcerous colitis, Crohn's disease, ischemic colitis, gastritis, digestive ulcer, rectitis, reflux esophagitis, duodenitis etc.), respiratory diseases (e.g., chronic obstructive pulmonary disease, asthma etc.), pancreatic diseases (e.g., pancreatic function insufficiency such as pancreatitis, pancreatic cystic fibrosis etc.), autoimmune diseases (e.g., myasthenia gravis, glomerulonephritis, multiple sclerosis, Sjogren's syndrome, systemic lupus erythematosus etc.), allergic diseases (e.g., pollinosis, allergic rhinitis, anaphylactic shock, atopic dermatitis etc.), rheumatoid diseases (e.g., chronic articular rheumatism, osteoarthritis, gout etc.), thymic diseases, immune disorders (e.g., immune disorders accompanying leukocyte abnormalities, spleen function insufficiency or thymic abnormalities), genital diseases (e.g., prostatic hypertrophy, prostatitis, testis neurosis, ovarian cystoma etc.), spleen diseases, cancers (e.g., testis tumor, ovarian cancer, breast cancer, esophagus cancer, lung cancer, kidney cancer, hepatoma, non-small cell lung cancer, prostate cancer, stomach cancer, bladder cancer, uterine cervix cancer, colon cancer, rectum cancer, pancreatic cancer, thymoma, myoma etc.), diabetes, hypertension, ischemia-reperfusion injury, central nerve diseases (e.g., Alzheimer's disease, Parkinson's syndrome, schizophrenia, cerebral vascular dementia, cerebral ischemia, epilepsy etc.) etc. The protein B of the present invention and DNA encoding the same are preferably prophylactic/therapeutic agents for respiratory diseases, renal diseases, digestive diseases etc.
For example, when there is a patient who cannot sufficiently or normally exhibit a cation (preferably monovalent cation such as Na+, K+ etc.)/H+ exchange transport activity because of a decrease or deficiency in the protein B of the present invention in the living body, (i) DNA encoding the protein B of the invention is administered into the patient to express the protein B of the invention in the living body, (ii) the DNA is inserted into target cells to express the protein B of the invention and the cells are transplanted to the patient, or (iii) the protein B of the invention is administered into the patient, whereby the role of the protein B of the invention can be exhibited sufficiently or normally in the patient.
The protein C of the present invention has an activity of transporting aminophospholipids, to contribute to transport of aminophospholipids, and simultaneously plays an important role in distributing lipids on a biomembrane.
Accordingly, when DNA encoding the protein C of the invention is abnormal or deficient or when the amount of the protein C of the invention expressed is reduced, there occur various diseases such as pancreatic diseases (e.g., pancreatic function insufficiency such as pancreatitis, pancreatic cystic fibrosis etc.), genital diseases (e.g., prostatic hypertrophy, prostatitis, testis neurosis, ovarian cystoma etc.), central nerve diseases (e.g., Alzheimer's disease, Parkinson's syndrome, schizophrenia, cerebral vascular dementia, cerebral ischemia, epilepsy etc.), digestive diseases (e.g., irritable bowel syndrome, ulcerous colitis, Crohn's disease, ischemic colitis, gastritis, digestive ulcer, rectitis, reflux esophagitis, duodenitis etc.), respiratory diseases (e.g., chronic obstructive pulmonary disease, asthma etc.), diabetes, hyperlipemia, cholestasis, or cancers (e.g., testis tumor, ovarian cancer, breast cancer, esophagus cancer, lung cancer, kidney cancer, hepatoma, non-small cell lung cancer, prostate cancer, stomach cancer, bladder cancer, uterine cervix cancer, colon cancer, rectum cancer, pancreatic cancer, thymoma, myoma etc.) etc., preferably pancreatic diseases, central nerve diseases, digestive diseases, respiratory diseases etc.
Accordingly, the protein C of the invention and the DNA encoding it can be used as safe medicines such as prophylactic/therapeutic agents for pancreatic diseases (e.g., pancreatic function insufficiency such as pancreatitis, pancreatic cystic fibrosis etc.), genital diseases (e.g., prostatic hypertrophy, prostatitis, testis neurosis, ovarian cystoma etc.), central nerve diseases (e.g., Alzheimer's disease, Parkinson's syndrome, schizophrenia, cerebral vascular dementia, cerebral ischemia, epilepsy etc.), digestive diseases (e.g., irritable bowel syndrome, ulcerous colitis, Crohn's disease, ischemic colitis, gastritis, digestive ulcer, rectitis, reflux esophagitis, duodenitis etc.), respiratory diseases (e.g., chronic obstructive pulmonary disease, asthma etc.), diabetes, hyperlipemia, cholestasis, or cancers (e.g., testis tumor, ovarian cancer, breast cancer, esophagus cancer, lung cancer, kidney cancer, hepatoma, non-small cell lung cancer, prostate cancer, stomach cancer, bladder cancer, uterine cervix cancer, colon cancer, rectum cancer, pancreatic cancer, thymoma, myoma etc.) etc. preferably pancreatic diseases, central nerve diseases, digestive diseases, respiratory diseases etc.
For example, when there is a patient who cannot sufficiently or normally exhibit an activity of transporting aminophospholipids because of a decrease or deficiency in the protein C of the present invention in the living body, (i) DNA encoding the protein C of the invention is administered into the patient to express the protein C of the invention in the living body, (ii) the DNA is inserted into target cells to express the protein C of the invention and the cells are transplanted to the patient, or (iii) the protein C of the invention is administered into the patient, whereby the role of the protein of the invention can be exhibited sufficiently or normally in the patient.
The protein D of the present invention has a cation channel activity, and plays an important role in recognition of stimuli such as pain. The protein D can also function as temperature-sensitive cation channel.
Accordingly, when DNA encoding the protein D of the invention is abnormal or deficient or when the amount of the protein D of the invention expressed is reduced, there occur various diseases such as inflammatory diseases (e.g., septicemia, pneumonia, encephalitis, meningitis, hepatitis, myocarditis, pleurisy etc.), autoimmune diseases (e.g., myasthenia gravis, glomerulonephritis, multiple sclerosis, Sjogren's syndrome, systemic lupus erythematosus etc.), allergic diseases (e.g., pollinosis, allergic rhinitis, anaphylactic shock, atopic dermatitis etc.), rheumatoid diseases (e.g., chronic articular rheumatism, osteoarthritis, gout etc.), diabetic neurosis, thymic diseases, immune disorders (e.g., immune disorders accompanying leukocyte abnormalities, spleen function insufficiency or thymic abnormalities), digestive diseases (e.g., irritable bowel syndrome, ulcerous colitis, Crohn's disease, ischemic colitis, gastritis, digestive ulcer, rectitis, reflux esophagitis, duodenitis etc.), respiratory diseases (e.g., chronic obstructive pulmonary disease, asthma etc.), circulatory diseases (e.g., cardiac insufficiency, arrhythmia, long QT syndrome, arteriosclerosis, angina etc.), hepatic diseases (e.g., hepatocirrhosis etc.), renal diseases (e.g., renal insufficiency, uremia etc.), muscular diseases (e.g., muscular dystrophy etc.), pancreatic diseases (e.g., pancreatic function insufficiency such as pancreatitis, pancreatic cystic fibrosis etc.), genital diseases (e.g., prostatic hypertrophy, prostatitis, testis neurosis, ovarian cystoma etc.), burns, pain syndrome (e.g., cancerous sharp pain, referred pain etc.), cancers (e.g., testis tumor, ovarian cancer, breast cancer, esophagus cancer, lung cancer, kidney cancer, hepatoma, non-small cell lung cancer, prostate cancer, stomach cancer, bladder cancer, uterine cervix cancer, colon cancer, rectum cancer, pancreatic cancer, thymoma, myoma etc.) etc., preferably inflammatory diseases, rheumatoid diseases, diabetic neurosis etc.
Accordingly, the protein D of the invention and the DNA encoding it can be used as safe medicines such as prophylactic/therapeutic agents for inflammatory diseases (e.g., septicemia, pneumonia, encephalitis, meningitis, hepatitis, myocarditis, pleurisy etc.), autoimmune diseases (e.g., myasthenia gravis, glomerulonephritis, multiple sclerosis, Sjogren's syndrome, systemic lupus erythematosus etc.), allergic diseases (e.g., pollinosis, allergic rhinitis, anaphylactic shock, atopic dermatitis etc.), rheumatoid diseases (e.g., chronic articular rheumatism, osteoarthritis, gout etc.), diabetic neurosis, thymic diseases, immune disorders (e.g., immune disorders accompanying leukocyte abnormalities, spleen function insufficiency or thymic abnormalities), digestive diseases (e.g., irritable bowel syndrome, ulcerous colitis, Crohn's disease, ischemic colitis, gastritis, digestive ulcer, rectitis, reflux esophagitis, duodenitis etc.), respiratory diseases (e.g., chronic obstructive pulmonary disease, asthma etc.), circulatory diseases (e.g., cardiac insufficiency, arrhythmia, long QT syndrome, arteriosclerosis, angina etc.), hepatic diseases (e.g., hepatocirrhosis etc.), renal diseases (e.g., renal insufficiency, uremia etc.), muscular diseases (e.g., muscular dystrophy etc.), pancreatic diseases (e.g., pancreatic function insufficiency such as pancreatitis, pancreatic cystic fibrosis etc.), genital diseases (e.g., prostatic hypertrophy, prostatitis, testis neurosis, ovarian cystoma etc.), burns, pain syndrome (e.g., cancerous sharp pain, referred pain etc.), cancers (e.g., testis tumor, ovarian cancer, breast cancer, esophagus cancer, lung cancer, kidney cancer, hepatoma, non-small cell lung cancer, prostate cancer, stomach cancer, bladder cancer, uterine cervix cancer, colon cancer, rectum cancer, pancreatic cancer, thymoma, myoma etc.) etc. The protein D of the invention and the DNA encoding it are preferably prophylactic/therapeutic agents for inflammatory diseases, rheumatoid diseases, diabetic neurosis etc.
For example, when there is a patient who cannot sufficiently or normally exhibit a cation channel activity because of a decrease or deficiency in the protein D of the present invention in the living body, (i) DNA encoding the protein D of the invention is administered into the patient to express the protein D of the invention in the living body, (ii) the DNA is inserted into target cells to express the protein D of the invention and the cells are transplanted to the patient, or (iii) the protein D of the invention is administered into the patient, whereby the role of the protein of the invention can be exhibited sufficiently or normally in the patient.
Where the DNA of the present invention is used as the prophylactic/therapeutic agents described above, the DNA itself is administered directly to human or other warm-blooded animal; alternatively, the DNA is inserted into an appropriate vector such as retrovirus vector, adenovirus vector, adenovirus-associated virus vector, etc. and then administered to human or other warm-blooded animal in a conventional manner. The DNA of the present invention may also be administered as an intact DNA, or prepared into medicines together with physiologically acceptable carriers such as adjuvants to assist its uptake, which are administered by gene gun or through a catheter such as a hydrogel catheter.
Where the protein of the present invention is used as the aforesaid prophylactic/therapeutic agents, the protein is advantageously used on a purified level of at least 90%, preferably at least 95%, more preferably at least 98% and most preferably at least 99%.
The protein of the present invention can be used orally, for example, in the form of tablets which may be sugar coated if necessary and desired, capsules, elixirs, microcapsules etc., or parenterally in the form of injectable preparations such as a sterile solution and a suspension in water or with other pharmaceutically acceptable liquid. These preparations can be manufactured by mixing the protein of the present invention with a physiologically acceptable known carrier, a flavoring agent, an excipient, a vehicle, an antiseptic agent, a stabilizer, a binder, etc. in a unit dosage form required in a generally accepted manner that is applied to making medicines. The active ingredient in the preparation is controlled in such a dose that an appropriate dose is obtained within the specified range given.
Additives miscible with tablets, capsules, etc. include a binder such as gelatin, corn starch, tragacanth and gum arabic, an excipient such as crystalline cellulose, a swelling agent such as corn starch, gelatin, alginic acid, etc., a lubricant such as magnesium stearate, a sweetening agent such as sucrose, lactose or saccharin, and a flavoring agent such as peppermint, akamono oil or cherry. When the unit dosage is in the form of capsules, liquid carriers such as oils and fats may further be used together with the additives described above. A sterile composition for injection may be formulated according to a conventional manner used to make pharmaceutical compositions, e.g., by dissolving or suspending the active ingredient in a vehicle such as water for injection, with a naturally occurring vegetable oil such as sesame oil, coconut oil, etc. to prepare the pharmaceutical composition.
Examples of an aqueous medium for injection include physiological saline and an isotonic solution containing glucose and other auxiliary agents (e.g., D-sorbitol, D-mannitol, sodium chloride, etc.) and may be used in combination with an appropriate dissolution aid such as an alcohol (e.g., ethanol or the like), a polyalcohol (e.g., propylene glycol and polyethylene glycol), a nonionic surfactant (e.g., POLYSORBATE 80™ (Polyoxyethylene (20) Sorbitan Monooleate) and HCO-50), etc. Examples of the oily medium include sesame oil, soybean oil, etc., which may also be used in combination with a dissolution aid such as benzyl benzoate, benzyl alcohol, etc. The protein of the present invention may further be formulated with a buffer (e.g., phosphate buffer, sodium acetate buffer, etc.), a soothing agent (e.g., benzalkonium chloride, procaine hydrochloride, etc.), a stabilizer (e.g., human serum albumin, polyethylene glycol, etc.), a preservative (e.g., benzyl alcohol, phenol, etc.), an antioxidant, etc. The thus prepared liquid for injection is normally filled in an appropriate ampoule.
The vector in which the DNA of the present invention is inserted may also be prepared into medicines in a manner similar to the procedures above, and such preparations are generally used parenterally.
Since the thus obtained medicine is safe and low toxic, and can be administered to, for example, warm-blooded animals (e.g., human, rat, mouse, guinea pig, rabbit, chicken, sheep, swine, bovine, horse, cat, dog, monkey, chimpanzee etc.).
The dose of the protein A of the present invention may vary depending on target disease, subject to be administered, route for administration, etc. When the protein A of the present invention is orally administered for example for the purpose of treatment of hyperlipemia, the protein is administered to adult (as 60 kg) generally in a daily dose of approximately 0.1 mg to 100 mg, preferably approximately 1.0 mg to 50 mg, more preferably approximately 1.0 to 20 mg. When the protein is parenterally administered, a single dose of the protein of the present invention may vary depending on subject to be administered, target disease, etc. When the protein A of the present invention is administered to adult (as 60 kg body weight), it is convenient to administer the protein A by injection to the affected area, generally in a daily dose of approximately 0.01 to 30 mg, preferably approximately 0.1 to 20 mg, more preferably approximately 0.1 to 10 mg. For other animal species, the corresponding dose as converted per 60 kg weight can be administered.
The dose of the protein B of the present invention may vary depending on target disease, subject to be administered, route for administration, etc. When the protein B of the present invention is orally administered for example for the purpose of treatment of renal insufficiency, the protein is administered to adult (as 60 kg) generally in a daily dose of approximately 0.1 mg to 100 mg, preferably approximately 1.0 mg to 50 mg, more preferably approximately 1.0 to 20 mg. When the protein is parenterally administered, a single dose of the protein may vary depending on subject to be administered, target disease, etc. When the protein B of the present invention is administered to adult (as 60 kg body weight) for the purpose of treatment of renal insufficiency, it is convenient to administer the protein by injection to the affected area, generally in a daily dose of approximately 0.01 to 30 mg, preferably approximately 0.1 to 20 mg, more preferably approximately 0.1 to 10 mg. For other animal species, the corresponding dose as converted per 60 kg weight can be administered.
The dose of the protein C of the present invention may vary depending on target disease, subject to be administered, route for administration, etc. When the protein C of the present invention is orally administered for example for the purpose of treatment of diabetes, the protein of the present invention is administered to adult (as 60 kg) generally in a daily dose of approximately 0.1 mg to 100 mg, preferably approximately 1.0 mg to 50 mg, more preferably approximately 1.0 to 20 mg. When the protein is parenterally administered, a single dose of the protein may vary depending on subject to be administered, target disease, etc. When the protein C of the present invention is administered to adult (as 60 kg body weight) for the purpose of treatment of diabetes, it is convenient to administer the protein by injection to the affected area, generally in a daily dose of approximately 0.01 to 30 mg, preferably approximately 0.1 to 20 mg, more preferably approximately 0.1 to 10 mg. For other animal species, the corresponding dose as converted per 60 kg weight can be administered.
The dose of the protein D of the present invention may vary depending on target disease, subject to be administered, route for administration, etc. When the protein D of the present invention is orally administered for example for the purpose of treatment of chronic articular rheumatism, the protein is administered to adult (as 60 kg) generally in a daily dose of approximately 0.1 mg to 100 mg, preferably approximately 1.0 mg to 50 mg, more preferably approximately 1.0 to 20 mg. When the protein is parenterally administered, a single dose may vary depending on subject to be administered, target disease, etc. When the protein D of the present invention is administered to adult (as 60 kg body weight) for the purpose of treatment of chronic articular rheumatism, it is convenient to administer the protein by injection to the affected area, generally in a daily dose of approximately 0.01 to 30 mg, preferably approximately 0.1 to 20 mg, more preferably approximately 0.1 to 10 mg. For other animal species, the corresponding dose as converted per 60 kg weight can be administered.
[2] Screening of a Candidate Drug for DiseasesThe protein of the present invention is useful as a reagent for screening a compound or its salt that promotes or inhibits the activity of the protein of the present invention.
The present invention provides (1) a method of screening a compound or a salt thereof (also referred to hereinafter as a promoter and inhibitor) that promotes or inhibits the activity (e.g., an activity of transporting substrate A etc.) of the protein A of the invention, which comprises using the protein A of the present invention. More specifically, the present invention provides, for example,
(2) a method of screening a promoter or an inhibitor, which comprises comparing (i) the substrate A transport activity of a cell having an ability to produce the protein A of the present invention with (ii) the substrate A transport activity of a mixture of a test compound and a cell having an ability to produce the protein A of the present invention.
Specifically, the amount of the substrate A in a labeled form incorporated into the cell is measured and compared between (i) and (ii) in the screening method described above.
As the labeling agent, use is made of, for example, radioisotopes (for example, [3H], [125I], [14C], [32P], [33P], [35S], etc.), fluorescent substances (for example, cyanine fluorescent dyes (e.g., Cy2, Cy3, Cy5, Cy5.5, Cy7 (Amersham Bioscience) etc), fluorescein etc.), luminescent substances (for example, luminol etc.), enzymes (for example, peroxidase etc.) or lanthanide elements.
As the labeled substrate A, use is made of, for example, [6,7-3H(N)]-estrone sulfate or [1,2,6,7-3H(N)]-dehydroepiandrosterone sulfate.
Examples of the test compounds include peptides, proteins, non-peptide compounds, synthetic compounds, fermentation products, cell extracts, plant extracts, animal tissue extracts, etc. and these compounds may be novel compounds or publicly known compounds.
To perform the screening method described above, a protein preparation is prepared by suspending cells having an ability to produce the protein A of the present invention, in a buffer appropriate for screening. A buffer such as a phosphate buffer or a borate buffer having a pH value of about 4 to 10 (preferably pH of about 6 to 8) can be used so long as it does not inhibit the activity of the protein A of the present invention.
As the cells having an ability to produce the protein A of the present invention, for example a host (transformant) transformed with a vector comprising the DNA encoding the protein A of the present invention described above is used. As the host, animal cells such as CHO cells are preferably used. In the screening, for example a transformant expressing the protein A of the present invention on a cell membrane by culturing it by the method described above is preferably used.
The substrate A transport activity can be measured according to known methods, for example a method described in Am. J. Physiol., 274, G157-169, 1998 or a modification thereto.
For example, a compound or a salt thereof that promotes the substrate A transport activity in (ii) above by about at least 20%, preferably at least 30%, more preferably about at least 50% as compared with the activity in (i) above can be selected as a compound or a salt thereof that promotes the activity of the protein A of the present invention.
For example, a compound or a salt thereof that inhibits the substrate A transport activity in (ii) above by about at least 20%, preferably at least 30%, more preferably about at least 50% as compared with the activity in (i) above can be selected as a compound or a salt thereof that inhibits (or suppresses) the activity of the protein A of the present invention.
Specifically, the screening method is as follows:
First, the cells are cultured in a multi-well plate etc. In screening, the medium is exchanged with a fresh buffer or a suitable buffer not toxic to the cells, and a given amount (5,000 cpm to 500,000 cpm) of a labeled form of the protein A is added to the cells, and at the same time, 10−10 to 10−7 M of a test compound is co-present. The reaction is carried out at 0° C. to 50° C., preferably about 4° C. to 37° C. for 20 minutes to 24 hours, preferably 30 minutes to 3 hours. After completion of the reaction, the medium or buffer is removed, and the cells are washed with an appropriate volume of a buffer (for example, PBS etc.), and then the residual radioactivity of the labeled substrate A incorporated into the cells is measured by means of a liquid scintillation counter. Assuming that the count in the absence of a test compound as an antagonizing compound is 100%, a test compound by which the count is reduced to e.g. 50% or less can be selected as a candidate compound capable of competitive inhibition.
Alternatively, after a gene for secretory alkaline phosphatase, luciferase or the like is inserted into a region downstream from a promoter of the protein A gene of the present invention and the gene is expressed in the cells described above, a compound or a salt thereof that promotes or inhibits the expression of the protein A of the present invention (that is, a compound or a salt thereof that promotes or inhibits the activity of the protein A of the present invention) can be screened by examining whether a test compound when brought into contact with the cells activates or inhibits the enzyme activity.
The present invention provides (1′) a method of screening a compound or a salt thereof (also referred to hereinafter as a promoter and inhibitor) that promotes or inhibits the activity [for example, cation (preferably monovalent cation such as Na+, K+ etc.)/H+ exchange transport activity] of the protein B of the invention, which comprises using the protein B of the present invention. More specifically, the present invention provides, for example:
(2′) a method of screening a promoter or an inhibitor, which comprises comparing (i′) the cation (preferably monovalent cation such as Na+, K+ etc.)/H+ exchange transport activity of a cell having an ability to produce the protein B of the present invention with (ii′) the cation (preferably monovalent cation such as Na+, K+ etc.)/H+ exchange transport activity of a mixture of a test compound and a cell having an ability to produce the protein B of the present invention.
Specifically, the screening method comprises, for example, measuring the cation (preferably monovalent cation such as Na+, K+ etc.)/H+ exchange transport activity as an indicator by a fluorescent dye and comparing the cation (preferably monovalent cation such as Na+, K+ etc.)/H+ exchange transport activity in (i′) above, with that in (ii′).
Examples of the test compounds include peptides, proteins, non-peptide compounds, synthetic compounds, fermentation products, cell extracts, plant extracts, animal tissue extracts, etc. and these compounds may be novel compounds or publicly known compounds.
To perform the screening method described above, a protein preparation is prepared by suspending cells having an ability to produce the protein B of the present invention, in a buffer appropriate for screening. A buffer such as a phosphate buffer or a borate buffer having a pH value of about 4 to 10 (preferably pH of about 6 to 8) can be used so long as it does not inhibit the cation (preferably monovalent cation such as Na+, K+, etc.)/H+ exchange transport activity of the protein B of the present invention.
As the cells having an ability to produce the protein B of the present invention, for example a host (transformant) transformed with a vector comprising the DNA encoding the protein of the present invention described above is used. As the host, animal cells such as CHO cells are preferably used. In the screening, for example a transformant expressing the protein B of the present invention on a cell membrane by culturing it by the method described above is preferably used.
The cation (preferably monovalent cation such as Na+, K+, etc.)/H+ exchange transport activity of the protein B of the present invention can be measured according to known methods, for example a method described in J. Biol. Chem. 274, 3978-3987, 1998 or a modification thereto.
For example, a test compound that promotes the cation (preferably monovalent cation such as Na+, K+, etc.)/H+ exchange transport activity in (ii′) above by about at least 20%, preferably at least 30%, more preferably about at least 50% as compared with the activity in (i′) above can be selected as a compound or a salt thereof that promotes the activity of the protein B of the present invention.
For example, a test compound that inhibits (or suppresses) the cation (preferably monovalent cation such as Na+, K+, etc.)/H+ exchange transport activity in (ii′) above by about at least 20%, preferably at least 30%, more preferably about at least 50% as compared with the activity in (i′) above can be selected as a compound or a salt thereof that inhibits the activity of the protein B of the present invention.
Alternatively, after a gene for secretory alkaline phosphatase, luciferase or the like is inserted into a region downstream from a promoter of the protein B gene of the present invention and the gene is expressed in the cells described above, a compound or a salt thereof that promotes or inhibits the expression of the protein B of the present invention (that is, a compound or a salt thereof that promotes or inhibits the activity of the protein B of the present invention) can be screened by examining whether a test compound when brought into contact with the cells activates or inhibits the enzyme activity.
The present invention provides (1″) a method of screening a compound or a salt thereof (also referred to hereinafter as a promoter and inhibitor) that promotes or inhibits the activity (for example, aminophospholipid transport etc.) of the protein C of the invention, which comprises using the protein C of the present invention. More specifically, the present invention provides, for example:
(2″) a method of screening a promoter or an inhibitor, which comprises comparing (i″) the aminophospholipid transport activity of a cell having an ability to produce the protein C of the present invention with (ii″) the aminophospholipid transport activity of a mixture of a test compound and a cell having an ability to produce the protein C of the present invention.
Specifically, the screening method comprises, for example, measuring aminophospholipid transport as an indicator by a radioisotope-labeled substrate or a fluorescent dye and comparing the aminophospholipid transport in (i″) with that in (ii″).
Examples of the test compounds include peptides, proteins, non-peptide compounds, synthetic compounds, fermentation products, cell extracts, plant extracts, animal tissue extracts, etc. and these compounds may be novel compounds or publicly known compounds.
To perform the screening method described above, a protein preparation is prepared by suspending cells having an ability to produce the protein C of the present invention, in a buffer appropriate for screening. A buffer such as a phosphate buffer or a borate buffer having a pH value of about 4 to 10 (preferably pH of about 6 to 8) can be used so long as it does not inhibit the aminophospholipid transport activity of the protein C of the present invention.
As the cells having an ability to produce the protein C of the present invention, for example a host (transformant) transformed with a vector comprising the DNA encoding the protein C of the present invention described above is used. As the host, animal cells such as CHO cells are preferably used. In the screening, for example a transformant expressing the protein C of the present invention on a cell membrane by culturing it by the method described above is preferably used.
The aminophospholipid transport activity of the protein C of the present invention can be measured according to known methods, for example a method described in J. Biol. Chem., 275, 23378-23386, 1998 or a modification thereto.
For example, a test compound that promotes the aminophospholipid transport activity in (ii′) above by about at least 20%, preferably at least 30%, more preferably about at least 50% compared with the activity in (i′) above can be selected as a compound or a salt thereof that promotes the activity of the protein C of the present invention.
For example, a test compound that inhibits (or suppresses) the aminophospholipid transport activity in (ii′) above by about at least 20%, preferably at least 30%, more preferably about at least 50% compared with the activity (i′) above can be selected as a compound or a salt thereof that inhibits the activity of the protein C of the present invention.
Alternatively, after a gene for secretory alkaline phosphatase, luciferase or the like is inserted into a region downstream from a promoter of the protein C gene of the present invention and the gene is expressed in the cells described above, a compound or a salt thereof that promotes or inhibits the expression of the protein C of the present invention (that is, a compound or a salt thereof that promotes or inhibits the activity of the protein C of the present invention) can be screened by examining whether a test compound when brought into contact with the cells activates or inhibits the enzyme activity.
The present invention provides (1′″) a method of screening a compound or a salt thereof (also referred to hereinafter as a promoter and inhibitor) that promotes or inhibits the activity (for example, cation channel activity) of the protein D of the invention, which comprises using the protein D of the present invention. More specifically, the present invention provides, for example:
(2′″) a method of screening a promoter or an inhibitor, which comprises comparing (i′″) the cation channel activity of a cell having an ability to produce the protein D of the present invention with (ii′″) the cation channel activity of a mixture of a test compound and a cell having an ability to produce the protein D of the present invention.
Specifically, the screening method comprises, for example, measuring the cation channel activity as an indicator by a patch clamp method and comparing the cation channel activity in (i′″) with that in (ii′″).
Examples of the test compounds include peptides, proteins, non-peptide compounds, synthetic compounds, fermentation products, cell extracts, plant extracts, animal tissue extracts, etc. and these compounds may be novel compounds or publicly known compounds.
To perform the screening method described above, a protein preparation is prepared by suspending cells having an ability to produce the protein D of the present invention, in a buffer appropriate for screening. A buffer such as a phosphate buffer or a borate buffer having a pH value of about 4 to 10 (preferably pH of about 6 to 8) can be used so long as it does not inhibit the cation channel activity of the protein D of the present invention.
As the cells having an ability to produce the protein of the present invention, for example a host (transformant) transformed with a vector comprising the DNA encoding the protein of the present invention described above is used. As the host, animal cells such as CHO cells are preferably used. In the screening, for example a transformant expressing the protein of the present invention on a cell membrane by culturing it by the method described above is preferably used.
The cation channel activity of the protein D of the present invention can be measured according to known methods, for example a method described in Nature, 389, 816, 1997 or a modification thereto.
For example, a test compound that promotes the cation channel activity in (ii′″) above by about at least 20%, preferably at least 30%, more preferably about at least 50% as compared with the activity in (i′″) above can be selected as a compound or a salt thereof that promotes the activity of the protein D of the present invention.
For example, a test compound that inhibits (or suppresses) the cation channel activity in (ii′″) above by about at least 20%, preferably at least 30%, more preferably about at least 50% as compared with the activity in (i′″) above can be selected as a compound or a salt thereof that inhibits the activity of the protein D of the present invention.
Alternatively, after a gene for secretory alkaline phosphatase, luciferase or the like is inserted into a region downstream from a promoter of the protein D gene of the present invention and the gene is expressed in the cells described above, a compound or a salt thereof that promotes or inhibits the expression of the protein D of the present invention (that is, a compound or a salt thereof that promotes or inhibits the activity of the protein D of the present invention) can be screened by examining whether a test compound when brought into contact with the cells activates or inhibits the enzyme activity.
Using the protein D of the present invention, or using the ligand binding assay system of the expression system constructed using a recombinant of the protein D of the present invention, compounds (e.g., peptides, proteins, non-peptide compounds, synthetic compounds, fermentation products, etc.) or salt forms thereof that alter the binding property between the protein D of the present invention and its ligand (hereinafter referred to as the ligand of the present invention) can be efficiently screened.
Specifically, the case (i) where the ligand of the present invention is brought into contact with the protein D of the present invention is compared with the case (ii) where the ligand of the present invention and a test compound are brought into contact with the protein D of the present invention. In this comparison, for example the amount of the ligand of the present invention bound to the protein D of the present invention is measured.
Specifically, the screening method of the present invention includes, for example:
(a) a method of screening a compound or its salt that alters the binding property between the ligand of the present invention and the protein D of the present invention, which comprises measuring and comparing the amount of the ligand of the invention bound to the protein D of the invention in the case where the ligand of the invention is brought into contact with the protein D of the invention, with that in the case where the ligand of the invention and a test compound are brought into contact with the protein D of the invention,
(b) a method of screening a compound or its salt that alters the binding property between the ligand of the present invention and the protein D of the present invention, which comprises measuring and comparing the amount of the ligand of the invention bound to cells containing the protein D of the invention or a membrane fraction of the cells in the case where the ligand of the invention is brought into contact with the cells or the cell membrane fraction, with that in the case where the ligand of the invention and a test compound are brought into contact with the cells or the cell membrane fraction,
(c) the screening method according to the above-mentioned (b), wherein the protein D of the present invention is the protein D of the present invention which was expressed on a cell membrane by culturing a transformant comprising DNA encoding the protein D of the present invention, and
(d) the screening method according to the above-mentioned (a) to (c), wherein the ligand of the present invention is a labeled ligand.
The protein D of the present invention is preferably the one in membrane fractions from organs in humans or warm-blooded animals. However, acquisition of human-derived organs is extremely difficult, and thus the protein D used in screening is preferably the one expressed in a large amount by a transformant.
For producing the protein D of the present invention, the above-described process for producing the protein D of the resent invention is used.
When cells containing the protein D of the present invention or a membrane fraction of the cells is used in the screening method described above, a preparation method described later may be followed.
Where cells containing the protein D of the present invention are used, the cells may be fixed using glutaraldehyde, formalin, etc. The fixation can be made by a publicly known method.
The cells containing the protein D of the present invention are host cells that have expressed the protein D of the present invention, and the host cells include Escherichia coli, Bacillus subtilis, yeast, insect cells, animal cells, and the like. The method of producing the cells is the same as described above.
The cell membrane fraction refers to a fraction abundant in cell membrane obtained by cell disruption and subsequent fractionation by a publicly known method. Useful cell disruption methods include cell squashing using a Potter-Elvehjem homogenizer, disruption using a Waring blender or Polytron (manufactured by Kinematica Inc.), disruption by ultrasonication, and disruption by cell spraying through thin nozzles under an increased pressure using a French press or the like. Cell membrane fractionation is effected mainly by fractionation using a centrifugal force, such as centrifugation for fractionation and density gradient centrifugation. For example, cell disruption fluid is centrifuged at a low speed (500 rpm to 3,000 rpm) for a short period of time (normally about 1 to about 10 minutes), the resulting supernatant is then centrifuged at a higher speed (15,000 rpm to 30,000 rpm) normally for 30 minutes to 2 hours. The precipitate thus obtained is used as the membrane fraction. The membrane fraction is rich in the protein D expressed and membrane components such as cell-derived phospholipids and membrane proteins.
The amount of the protein D of the invention in the cells containing the protein D and in the membrane fraction of the cells is preferably 103 to 108 molecules per cell, more preferably 105 to 107 molecules per cell. As the amount of expression increases, the ligand binding activity per unit of membrane fraction (specific activity) increases so that not only the highly sensitive screening system can be constructed but also large quantities of samples can be assayed with the same lot.
To carry out the screening method described above, for example a fraction of the protein D of the present invention and the ligand of the present invention (for example, the labeled ligand of the present invention) are used. The fraction of the protein D of the present invention is preferably a fraction of the naturally occurring protein D of the present invention or the recombinant protein D of the present invention having an activity equivalent to that of the natural protein. Herein, the equivalent activity is intended to mean a ligand binding activity etc. As the labeled ligand, use can be made of ligands labeled for example with radioisotopes (for example, [3H], [125I], [14C], [32P], [33P], [35S], etc.), fluorescent substances (for example, cyanine fluorescent dyes (e.g., Cy2, Cy3, Cy5, Cy5.5, Cy7 (Amersham Bioscience) etc), fluorescein etc.), luminescent substances (for example, luminol etc.), enzymes (for example, peroxidase etc.) or lanthanide elements.
Specifically, to screen the compounds or salts thereof that alter the binding property between the ligand of the present invention and the protein D of the present invention, first, the receptor standard is prepared by suspending cells or cell membrane fraction containing the protein D of the present invention in a buffer appropriate for the screening. For the buffer, any buffer that does not interfere with the binding of the ligand to the protein is usable and examples of such a buffer are phosphate buffer, Tris-hydrochloride buffer, etc., having a pH value of 4 to 10 (preferably a pH value of 6 to 8). To minimize a non-specific binding, a surfactant such as CHAPS, TWEEN-80™ (Polyoxyethylene (20) Sorbitan Monooleate) (Kao-Atlas Co.), digitonin, deoxycholate, etc. may be added to the buffer. To inhibit degradation of the protein D of the present invention by proteases, protease inhibitors such as PMSF, leupeptin, E-64 (manufactured by Peptide Research Laboratory, Co.), and pepstatin may be added. A predetermined amount (5,000 to 500,000 cpm) of the labeled ligand of the present invention is added to 0.01 to 10 ml solution of the protein in the coexistence of 10−10 to 10−7 M test compound. To examine non-specific binding (NSB), a reaction tube containing the unlabeled ligand of the present invention in large excess is also prepared. The reaction is carried out at approximately 0 to 50° C., preferably about 4 to 37° C. for about 20 minutes to about 24 hours, preferably about 30 minutes to about 3 hours. After completion of the reaction, the reaction mixture is filtrated through glass fiber filter paper, etc. and washed with an appropriate volume of the same buffer. The residual radioactivity on the glass fiber filter paper is then measured by means of a liquid scintillation counter or γ-counter. Assuming that the count (B0-NSB) obtained by subtracting the amount of non-specific binding (NSB) from the count obtained in the absence of any competitive substance (B0) is 100%, the test compound by which the amount of specific binding (B-NSB) is reduced for example to 50% or less can be selected as a candidate substance having a potential of competitive inhibition.
The compounds or salts thereof obtained by using the screening method of the present invention are the compounds or salts thereof that alter the binding property between the protein D of the present invention and the ligand of the present invention.
The polynucleotide encoding the protein of the present invention is useful as a reagent for screening a compound or its salt that promotes or inhibits the expression of the protein gene of the present invention.
The present invention provides (3) a method of screening a compound or a salt thereof (also referred to hereinafter the promoter and inhibitor) that promotes or inhibits the expression of the gene for the protein of the invention, which comprises using a polynucleotide encoding the protein of the present invention. More specifically, the present invention provides, for example:
(4) a method of screening the promoter and inhibitor, which comprises comparing the case (iii) where cells having an ability to produce the protein of the present invention are cultured, with the case (iv) where a mixture of a test compound and cells having an ability to produce the protein of the present invention is cultured.
The screening method comprises, for example, measuring and comparing the expression level of the gene for the protein of the present invention (specifically, the amount of the protein of the present invention or the amount of mRNA encoding the protein) in the case (iii), with that in the case (iv).
Examples of the test compounds include peptides, proteins, non-peptide compounds, synthetic compounds, fermentation products, cell extracts, plant extracts, animal tissue extracts etc. and these compounds may be novel compounds or publicly known compounds.
To perform the screening method described above, a protein preparation is prepared by suspending cells having an ability to produce the protein of the present invention in a buffer appropriate for screening. A buffer such as a phosphate buffer or a borate buffer having a pH value of about 4 to 10 (preferably pH of about 6 to 8) can be used so long as it does not inhibit expression of the protein of the present invention.
As the cells having an ability to produce the protein of the present invention, for example a host (transformant) transformed with a vector comprising the DNA encoding the protein of the present invention described above is used. As the host, animal cells such as CHO cells are preferably used. In the screening, for example a transformant expressing the protein of the present invention on a cell membrane by culturing it by the method described above is preferably used.
In measuring the amount of the protein of the present invention, the protein present in a cellular extract or the like can be measured according to known methods, for example by Western analysis, ELISA or the like, or a modification thereof, with antibodies recognizing the protein of the present invention.
The expression level of the protein gene of the present invention can be measured by known methods, for example Northern blotting, reverse transcription-polymerase chain reaction (RT-PCR), a real-time PCR analysis system (TaqMan polymerase chain reaction, Applied Biosystems) or by a modification thereof.
For example, a test compound by which the expression level of the protein gene of the present invention in the case (iv) is promoted by at least about 20%, preferably at least about 30%, more preferably at least about 50%, as compared with the expression level in the case (iii), can be selected as a compound or its salt that promotes the expression level of the protein gene of the present invention.
For example, a test compound by which the expression level of the protein gene of the present invention in the case (iv) is inhibited by at least about 20%, preferably at least about 30%, more preferably at least about 50%, as compared with the expression level in the case (iii), can be selected as a compound or its salt that inhibits the expression level of the protein gene of the present invention.
The antibody of the present invention is useful as a reagent for screening a compound or a salt thereof that promotes or inhibits the expression of the protein of the present invention.
The present invention provides (5) a method of screening a compound or a salt thereof (also referred to hereinafter as the promoter and inhibitor) that promotes or inhibits the expression of the protein of the present invention, which comprises using the antibody of the present invention. More specifically, the present invention provides, for example:
(6) a method of screening the promoter or inhibitor, which comprises comparing the case (v) where cells having an ability to produce the protein of the present invention are cultured, with the case (vi) where a mixture of a test compound and cells having an ability to produce the protein of the present invention is cultured.
The screening method comprises, for example, the measurement (e.g., detection of the expression of the protein of the present invention, quantification of the expressed protein of the present invention, etc.) of the expression level of the protein of the present invention (specifically, the amount of the protein of the present invention) by the antibody of the present invention and comparing the amount of the expressed protein in the case (v) with that in the case (vi).
Examples of the test compounds include peptides, proteins, non-peptide compounds, synthetic compounds, fermentation products, cell extracts, plant extracts, animal tissue extracts, etc. and these compounds may be novel compounds or publicly known compounds.
To perform the screening method described above, a protein preparation is prepared by suspending cells having an ability to produce the protein of the present invention in a buffer appropriate for screening. A buffer such as a phosphate buffer or a borate buffer having a pH value of about 4 to 10 (preferably pH of about 6 to 8) can be used so long as it does not inhibit the activity of the protein of the present invention.
As the cells having an ability to produce the protein of the present invention, for example a host (transformant) transformed with a vector comprising the DNA encoding the protein of the present invention described above is used. As the host, animal cells such as CHO cells are preferably used. In the screening, for example a transformant expressing the protein of the present invention on a cell membrane by culturing it by the method described above is preferably used.
The amount of the protein of the present invention can determined by measuring the protein present in a cell extract with the antibody of the invention recognizing the protein by publicly known methods, for example, Western analysis, ELISA, or a modification of the known methods.
For example, a test compound by which the expression of the protein of the invention in the case (vi) is promoted by at least about 20%, preferably at least about 30%, more preferably at least about 50%, as compared with the expression in the case (v) can be selected as a compound or its salt that promotes the expression of the protein of the present invention.
For example, a test compound by which the expression of the protein of the invention in the case (vi) is inhibited by at least about 20%, preferably at least about 30%, more preferably at least about 50%, as compared with the expression in the case (v) can be selected as a compound or its salt that inhibits the expression of the protein of the present invention.
The screening kit of the present invention comprises the protein of the present invention or its partial peptide or salts thereof, a cell having an ability to produce the protein or partial peptide of the present invention, the ligand of the present invention, the antibody of the present invention, etc.
The compounds or salts thereof, which are obtainable using the screening method or screening kit of the present invention, are compounds (or salts thereof) selected from, e.g., peptides, proteins, non-peptide compounds, synthetic compounds, fermentation products, cell extracts, plant extracts, animal tissue extracts, blood plasma, and the like, and these compounds or salts thereof are compounds or their salts promoting or inhibiting the activity of the protein of the present invention, compounds or their salts promoting or inhibiting the expression of the protein gene of the present invention, compounds or their salts promoting or inhibiting the expression of the protein of the present invention, compounds or their salts altering the binding property between the protein A of the present invention and the ligand of the present invention, etc.
For salts of these compounds, the same salts as those given for the protein of the present invention above may be used.
The compound or its salt promoting the activity of the protein A of the present invention, the compound or its salt promoting the expression of the protein A gene of the present invention, and the compound or its salt promoting the expression of the protein A of the present invention are useful as safe and low toxic drugs such as prophylactic/therapeutic agents for diseases such as hyperlipemia, genital diseases (e.g., prostatic hypertrophy, prostatitis, testis neurosis, ovarian cystoma etc.), digestive diseases (e.g., irritable bowel syndrome, ulcerous colitis, Crohn's disease, ischemic colitis, gastritis, digestive ulcer, rectitis, reflux esophagitis, duodenitis etc.), respiratory diseases (e.g., chronic obstructive pulmonary disease, bronchial asthma etc.), autoimmune diseases (e.g., myasthenia gravis, glomerulonephritis, multiple sclerosis, Sjogren's syndrome, systemic lupus erythematosus etc.), allergic diseases (e.g., pollinosis, allergic rhinitis, anaphylactic shock, atopic dermatitis etc.), rheumatoid diseases (e.g., chronic articular rheumatism, osteoarthritis, gout etc.), thymic diseases, immune disorders (e.g., immune disorders accompanying leukocyte abnormalities, spleen function insufficiency or thymic abnormalities), diabetes, hypothyroidism, circulatory diseases (e.g., cardiac insufficiency, arrhythmia, long QT syndrome, arteriosclerosis, angina etc.), pancreatic diseases (e.g., pancreatic function insufficiency such as pancreatitis, pancreatic cystic fibrosis etc.), cancers (e.g., testis tumor, ovarian cancer, breast cancer, esophagus cancer, lung cancer, kidney cancer, hepatoma, non-small cell lung cancer, prostate cancer, stomach cancer, bladder cancer, uterine cervix cancer, colon cancer, rectum cancer, pancreatic cancer, thymoma, myoma etc.) etc., preferably hyperlipemia, arteriosclerosis, genital diseases, digestive diseases etc.
The compound or its salt inhibiting the activity of the protein A of the present invention, the compound or its salt inhibiting the expression of the protein A gene of the present invention, and the compound or its salt inhibiting the expression of the protein A of the present invention are useful as safe and low toxic drugs such as prophylactic/therapeutic agents for diseases such as hyperlipemia, genital diseases (e.g., prostatic hypertrophy, prostatitis, testis neurosis, ovarian cystoma etc.), digestive diseases (e.g., irritable bowel syndrome, ulcerous colitis, Crohn's disease, ischemic colitis, gastritis, digestive ulcer, rectitis, reflux esophagitis, duodenitis etc.), respiratory diseases (e.g., chronic obstructive pulmonary disease, bronchial asthma etc.), autoimmune diseases (e.g., myasthenia gravis, glomerulonephritis, multiple sclerosis, Sjogren's syndrome, systemic lupus erythematosus etc.), allergic diseases (e.g., pollinosis, allergic rhinitis, anaphylactic shock, atopic dermatitis etc.), rheumatoid diseases (e.g., chronic articular rheumatism, osteoarthritis, gout etc.), thymic diseases, immune disorders (e.g., immune disorders accompanying leukocyte abnormalities, spleen function insufficiency or thymic abnormalities), diabetes, hypothyroidism, circulatory diseases (e.g., cardiac insufficiency, arrhythmia, long QT syndrome, arteriosclerosis, angina etc.), pancreatic diseases (e.g., pancreatic function insufficiency such as pancreatitis, pancreatic cystic fibrosis etc.), cancers (e.g., testis tumor, ovarian cancer, breast cancer, esophagus cancer, lung cancer, kidney cancer, hepatoma, non-small cell lung cancer, prostate cancer, stomach cancer, bladder cancer, uterine cervix cancer, colon cancer, rectum cancer, pancreatic cancer, thymoma, myoma etc.) etc., preferably hyperlipemia, arteriosclerosis, genital diseases, digestive diseases etc.
The compound or its salt promoting the activity of the protein B of the present invention, the compound or its salt promoting the expression of the protein B gene of the present invention, and the compound or its salt promoting the expression of the protein B of the present invention are useful as safe and low toxic drugs such as prophylactic/therapeutic agents for diseases such as renal diseases (e.g., renal insufficiency, uremia etc.), digestive diseases (e.g., irritable bowel syndrome, ulcerous colitis, Crohn's disease, ischemic colitis, gastritis, digestive ulcer, rectitis, reflux esophagitis, duodenitis etc.), respiratory diseases (e.g., chronic obstructive pulmonary disease, asthma etc.), pancreatic diseases (e.g., pancreatic function insufficiency such as pancreatitis, pancreatic cystic fibrosis etc.), autoimmune diseases (e.g., myasthenia gravis, glomerulonephritis, multiple sclerosis, Sjogren's syndrome, systemic lupus erythematosus etc.), allergic diseases (e.g., pollinosis, allergic rhinitis, anaphylactic shock, atopic dermatitis etc.), rheumatoid diseases (e.g., chronic articular rheumatism, osteoarthritis, gout etc.), thymic diseases, immune disorders (e.g., immune disorders accompanying leukocyte abnormalities, spleen function insufficiency or thymic abnormalities), genital diseases (e.g., prostatic hypertrophy, prostatitis, testis neurosis, ovarian cystoma etc.), spleen diseases, cancers (e.g., testis tumor, ovarian cancer, breast cancer, esophagus cancer, lung cancer, kidney cancer, hepatoma, non-small cell lung cancer, prostate cancer, stomach cancer, bladder cancer, uterine cervix cancer, colon cancer, rectum cancer, pancreatic cancer, thymoma, myoma etc.), diabetes, hypertension, ischemia-reperfusion injury, central nerve diseases (e.g., Alzheimer's disease, Parkinson's syndrome, schizophrenia, cerebral vascular dementia, cerebral ischemia, epilepsy etc.), preferably respiratory diseases, renal diseases, digestive diseases etc.
The compound or its salt inhibiting the activity of the protein B of the present invention, the compound or its salt inhibiting the expression of the protein B gene of the present invention, and the compound or its salt inhibiting the expression of the protein B of the present invention are useful as safe and low toxic drugs such as prophylactic/therapeutic agents for diseases such as renal diseases (e.g., renal insufficiency, uremia etc.), digestive diseases (e.g., irritable bowel syndrome, ulcerous colitis, Crohn's disease, ischemic colitis, gastritis, digestive ulcer, rectitis, reflux esophagitis, duodenitis etc.), respiratory diseases (e.g., chronic obstructive pulmonary disease, asthma etc.), pancreatic diseases (e.g., pancreatic function insufficiency such as pancreatitis, pancreatic cystic fibrosis etc.), autoimmune diseases (e.g., myasthenia gravis, glomerulonephritis, multiple sclerosis, Sjogren's syndrome, systemic lupus erythematosus etc.), allergic diseases (e.g., pollinosis, allergic rhinitis, anaphylactic shock, atopic dermatitis etc.), rheumatoid diseases (e.g., chronic articular rheumatism, osteoarthritis, gout etc.), thymic diseases, immune disorders (e.g., immune disorders accompanying leukocyte abnormalities, spleen function insufficiency or thymic abnormalities), genital diseases (e.g., prostatic hypertrophy, prostatitis, testis neurosis, ovarian cystoma etc.), spleen diseases, cancers (e.g., testis tumor, ovarian cancer, breast cancer, esophagus cancer, lung cancer, kidney cancer, hepatoma, non-small cell lung cancer, prostate cancer, stomach cancer, bladder cancer, uterine cervix cancer, colon cancer, rectum cancer, pancreatic cancer, thymoma, myoma etc.), diabetes, hypertension, ischemia-reperfusion injury, central nerve diseases (e.g., Alzheimer's disease, Parkinson's syndrome, schizophrenia, cerebral vascular dementia, cerebral ischemia, epilepsy etc.), preferably respiratory diseases, renal diseases, digestive diseases etc.
The compound or its salt promoting the activity of the protein C of the present invention, the compound or its salt promoting the expression of the protein C gene of the present invention, and the compound or its salt promoting the expression of the protein C of the present invention are useful as safe and low toxic drugs such as prophylactic/therapeutic agents for diseases such as pancreatic diseases (e.g., pancreatic function insufficiency such as pancreatitis, pancreatic cystic fibrosis etc.), genital diseases (e.g., prostatic hypertrophy, prostatitis, testis neurosis, ovarian cystoma etc.), central nerve diseases (e.g., Alzheimer's disease, Parkinson's syndrome, schizophrenia, cerebral vascular dementia, cerebral ischemia, epilepsy etc.), digestive diseases (e.g., irritable bowel syndrome, ulcerous colitis, Crohn's disease, ischemic colitis, gastritis, digestive ulcer, rectitis, reflux esophagitis, duodenitis etc.), respiratory diseases (e.g., chronic obstructive pulmonary disease, asthma etc.), diabetes, hyperlipemia, cholestasis, or cancers (e.g., testis tumor, ovarian cancer, breast cancer, esophagus cancer, lung cancer, kidney cancer, hepatoma, non-small cell lung cancer, prostate cancer, stomach cancer, bladder cancer, uterine cervix cancer, colon cancer, rectum cancer, pancreatic cancer, thymoma, myoma etc.) etc., preferably pancreatic diseases, central nerve diseases, digestive diseases, respiratory diseases etc.
The compound or its salt inhibiting the activity of the protein C of the present invention, the compound or its salt inhibiting the expression of the protein C gene of the present invention, and the compound or its salt inhibiting the expression of the protein C of the present invention are useful as safe and low toxic drugs such as prophylactic/therapeutic agents for diseases such as pancreatic diseases (e.g., pancreatic function insufficiency such as pancreatitis, pancreatic cystic fibrosis etc.), genital diseases (e.g., prostatic hypertrophy, prostatitis, testis neurosis, ovarian cystoma etc.), central nerve diseases (e.g., Alzheimer's disease, Parkinson's syndrome, schizophrenia, cerebral vascular dementia, cerebral ischemia, epilepsy etc.), digestive diseases (e.g., irritable bowel syndrome, ulcerous colitis, Crohn's disease, ischemic colitis, gastritis, digestive ulcer, rectitis, reflux esophagitis, duodenitis etc.), respiratory diseases (e.g., chronic obstructive puhnonary disease, asthma etc.), diabetes, hyperlipemia, cholestasis, or cancers (e.g., testis tumor, ovarian cancer, breast cancer, esophagus cancer, lung cancer, kidney cancer, hepatoma, non-small cell lung cancer, prostate cancer, stomach cancer, bladder cancer, uterine cervix cancer, colon cancer, rectum cancer, pancreatic cancer, thymoma, myoma etc.) etc., preferably pancreatic diseases, central nerve diseases, digestive diseases, respiratory diseases etc.
The compound or its salt promoting the activity of the protein D of the present invention, the compound or its salt promoting the expression of the protein D gene of the present invention, and the compound or its salt promoting the expression of the protein D of the present invention are useful as safe and low toxic drugs such as prophylactic/therapeutic agents for diseases such as inflammatory diseases (e.g., septicemia, pneumonia, encephalitis, meningitis, hepatitis, myocarditis, pleurisy etc.), autoimmune diseases (e.g., myasthenia gravis, glomerulonephritis, multiple sclerosis, Sjogren's syndrome, systemic lupus erythematosus etc.), allergic diseases (e.g., pollinosis, allergic rhinitis, anaphylactic shock, atopic dermatitis etc.), rheumatoid diseases (e.g., chronic articular rheumatism, osteoarthritis, gout etc.), diabetic neurosis, thymic diseases, immune disorders (e.g., immune disorders accompanying leukocyte abnormalities, spleen function insufficiency or thymic abnormalities), digestive diseases (e.g., irritable bowel syndrome, ulcerous colitis, Crohn's disease, ischemic colitis, gastritis, digestive ulcer, rectitis, reflux esophagitis, duodenitis etc.), respiratory diseases (e.g., chronic obstructive pulmonary disease, asthma etc.), circulatory diseases (e.g., cardiac insufficiency, arrhythmia, long QT syndrome, arteriosclerosis, angina etc.), hepatic diseases (e.g., hepatocirrhosis etc.), renal diseases (e.g., renal insufficiency, uremia etc.), muscular diseases (e.g., muscular dystrophy etc.), pancreatic diseases (e.g., pancreatic function insufficiency such as pancreatitis, pancreatic cystic fibrosis etc.), genital diseases (e.g., prostatic hypertrophy, prostatitis, testis neurosis, ovarian cystoma etc.), burns, pain syndrome (e.g., cancerous sharp pain, referred pain etc.), cancers (e.g., testis tumor, ovarian cancer, breast cancer, esophagus cancer, lung cancer, kidney cancer, hepatoma, non-small cell lung cancer, prostate cancer, stomach cancer, bladder cancer, uterine cervix cancer, colon cancer, rectum cancer, pancreatic cancer, thymoma, myoma etc.) etc., preferably inflammatory diseases, rheumatoid diseases, diabetic neurosis etc.
The compound or its salt inhibiting the activity of the protein D of the present invention, the compound or its salt inhibiting the expression of the protein D gene of the present invention, and the compound or its salt inhibiting the expression of the protein D of the present invention are useful as safe and low toxic drugs such as prophylactic/therapeutic agents for diseases such as inflammatory diseases (e.g., septicemia, pneumonia, encephalitis, meningitis, hepatitis, myocarditis, pleurisy etc.), autoimmune diseases (e.g., myasthenia gravis, glomerulonephritis, multiple sclerosis, Sjogren's syndrome, systemic lupus erythematosus etc.), allergic diseases (e.g., pollinosis, allergic rhinitis, anaphylactic shock, atopic dermatitis etc.), rheumatoid diseases (e.g., chronic articular rheumatism, osteoarthritis, gout etc.), diabetic neurosis, thymic diseases, immune disorders (e.g., immune disorders accompanying leukocyte abnormalities, spleen function insufficiency or thymic abnormalities), digestive diseases (e.g., irritable bowel syndrome, ulcerous colitis, Crohn's disease, ischemic colitis, gastritis, digestive ulcer, rectitis, reflux esophagitis, duodenitis etc.), respiratory diseases (e.g., chronic obstructive pulmonary disease, asthma etc.), circulatory diseases (e.g., cardiac insufficiency, arrhythmia, long QT syndrome, arteriosclerosis, angina etc.), hepatic diseases (e.g., hepatocirrhosis etc.), renal diseases (e.g., renal insufficiency, uremia etc.), muscular diseases (e.g., muscular dystrophy etc.), pancreatic diseases (e.g., pancreatic function insufficiency such as pancreatitis, pancreatic cystic fibrosis etc.), genital diseases (e.g., prostatic hypertrophy, prostatitis, testis neurosis, ovarian cystoma etc.), burns, pain syndrome (e.g., cancerous sharp pain, referred pain etc.), cancers (e.g., testis tumor, ovarian cancer, breast cancer, esophagus cancer, lung cancer, kidney cancer, hepatoma, non-small cell lung cancer, prostate cancer, stomach cancer, bladder cancer, uterine cervix cancer, colon cancer, rectum cancer, pancreatic cancer, thymoma, myoma etc.) etc., preferably inflammatory diseases, rheumatoid diseases, diabetic neurosis etc.
The compound or its salt altering the binding property between the protein D of the present invention and the ligand of the present invention is useful as a safe and low toxic drug such as a prophylactic/therapeutic agent for diseases such as inflammatory diseases (e.g., septicemia, pneumonia, encephalitis, meningitis, hepatitis, myocarditis, pleurisy etc.), autoimmune diseases (e.g., myasthenia gravis, glomerulonephritis, multiple sclerosis, Sjogren's syndrome, systemic lupus erythematosus etc.), allergic diseases (e.g., pollinosis, allergic rhinitis, anaphylactic shock, atopic dermatitis etc.), rheumatoid diseases (e.g., chronic articular rheumatism, osteoarthritis, gout etc.), diabetic neurosis, thymic diseases, immune disorders (e.g., immune disorders accompanying leukocyte abnormalities, spleen function insufficiency or thymic abnormalities), digestive diseases (e.g., irritable bowel syndrome, ulcerous colitis, Crohn's disease, ischemic colitis, gastritis, digestive ulcer, rectitis, reflux esophagitis, duodenitis etc.), respiratory diseases (e.g., chronic obstructive pulmonary disease, asthma etc.), circulatory diseases (e.g., cardiac insufficiency, arrhythmia, long QT syndrome, arteriosclerosis, angina etc.), hepatic diseases (e.g., hepatocirrhosis etc.), renal diseases (e.g., renal insufficiency, uremia etc.), muscular diseases (e.g., muscular dystrophy etc.), pancreatic diseases (e.g., pancreatic function insufficiency such as pancreatitis, pancreatic cystic fibrosis etc.), genital diseases (e.g., prostatic hypertrophy, prostatitis, testis neurosis, ovarian cystoma etc.), burns, pain syndrome (e.g., cancerous sharp pain, referred pain etc.), cancers (e.g., testis tumor, ovarian cancer, breast cancer, esophagus cancer, lung cancer, kidney cancer, hepatoma, non-small cell lung cancer, prostate cancer, stomach cancer, bladder cancer, uterine cervix cancer, colon cancer, rectum cancer, pancreatic cancer, thymoma, myoma etc.) etc., preferably inflammatory diseases, rheumatoid diseases, diabetic neurosis etc.
When the compounds obtainable using the screening method or screening kit of the present invention are used as the prophylactic/therapeutic agents described above, the compounds can be formulated by the conventional methods. The compounds may be prepared for example in the form of tablets, capsules, elixirs, microcapsules, sterile solutions, suspensions, etc.
Since the thus obtained medicine is safe and low toxic, and can be administered to, for example, humans or warm-blooded animals (e.g., mouse, rat, rabbit, sheep, swine, bovine, horse, chicken, cat, dog, monkey, chimpanzee etc.).
The dose of the above compound or its salt may vary depending on its action, target disease, subject to be administered, route for administration, etc. When the compound or its salt that promotes the activity or expression of the protein A of the present invention is orally administered for example for the purpose of treatment of hyperlipemia, the compound or its salt is administered to adult (as 60 kg) generally in a daily dose of approximately 0.1 mg to 100 mg, preferably approximately 1.0 mg to 50 mg, more preferably approximately 1.0 to 20 mg. When the compound or its salt is parenterally administered, a single dose of the compound or its salt may vary depending on subject to be administered, target disease, etc. When the compound or its salt is administered in the form of an injection to adult (as 60 kg body weight) for the purpose of treatment of hyperlipemia, it is convenient to administer the compound or its salt by intravenous injection generally in a daily dose of approximately 0.01 to 30 mg, preferably approximately 0.1 to 20 mg, more preferably approximately 0.1 to 10 mg. For other animal species, the corresponding dose as converted per 60 kg weight can be administered.
The dose of the compound or its salt may vary depending on its action, target disease, subject to be administered, route for administration, etc. When the compound or its salt that promotes the activity or expression of the protein B of the present invention is orally administered for example for the purpose of treatment of renal insufficiency, the compound or its salt is administered to adult (as 60 kg) generally in a daily dose of approximately 0.1 mg to 100 mg, preferably approximately 1.0 mg to 50 mg, more preferably approximately 1.0 to 20 mg. When the compound or its salt is parenterally administered, a single dose of the compound or its salt may vary depending on subject to be administered, target disease, etc. When the compound or its salt is administered in the form of an injection to adult (as 60 kg body weight) for the purpose of treatment of renal insufficiency, it is convenient to administer the compound or its salt by intravenous injection generally in a daily dose of approximately 0.01 to 30 mg, preferably approximately 0.1 to 20 mg, more preferably approximately 0.1 to 10 mg. For other animal species, the corresponding dose as converted per 60 kg weight can be administered.
The dose of the compound or its salt may vary depending on its action, target disease, subject to be administered, route for administration, etc. When the compound or its salt that promotes the activity or expression of the protein C of the present invention is orally administered for example for the purpose of treatment of diabetes, the compound or its salt is administered to adult (as 60 kg) generally in a daily dose of approximately 0.1 mg to 100 mg, preferably approximately 1.0 mg to 50 mg, more preferably approximately 1.0 to 20 mg. When the compound or its salt is parenterally administered, a single dose of the compound or its salt may vary depending on subject to be administered, target disease, etc. When the compound or its salt is administered in the form of an injection to adult (as 60 kg body weight) for the purpose of treatment of diabetes, it is convenient to administer the compound or its salt by intravenous injection generally in a daily dose of approximately 0.01 to 30 mg, preferably approximately 0.1 to 20 mg, more preferably approximately 0.1 to 10 mg. For other animal species, the corresponding dose as converted per 60 kg weight can be administered.
The dose of the compound or its salt may vary depending on its action, target disease, subject to be administered, route for administration, etc. When the compound or its salt that promotes the activity or expression of the protein D of the present invention, or the compound or its salt that alters the binding property between the protein D of the present invention and the ligand of the present invention is orally administered for example for the purpose of treatment of chronic articular rheumatism, the compound or its salt is administered to adult (as 60 kg) generally in a daily dose of approximately 0.1 mg to 100 mg, preferably approximately 1.0 mg to 50 mg, more preferably approximately 1.0 to 20 mg. When the compound or its salt is parehterally administered, a single dose of the compound or its salt may vary depending on subject to be administered, target disease, etc. When the compound or its salt is administered in the form of an injection to adult (as 60 kg body weight) for the purpose of treatment of chronic articular rheumatism, it is convenient to administer the compound or its salt by intravenous injection generally in a daily dose of approximately 0.01 to 30 mg, preferably approximately 0.1 to 20 mg, more preferably approximately 0.1 to 10 mg. For other animal species, the corresponding dose as converted per 60 kg weight can be administered.
[3] Quantification of the Protein of the Present Invention, its Partial Peptide, or its SaltThe antibody of the present invention is capable of specifically recognizing the protein of the present invention and can thus be used for quantification of the protein of the present invention in a test sample fluid, in particular, for quantification by the sandwich immunoassay.
That is, the present invention provides:
(i) a method for quantification of the protein of the present invention in a test sample fluid, which comprises competitively reacting the antibody of the present invention, a test sample fluid and a labeled form of the protein of the present invention, and measuring the ratio of the labeled protein of the present invention bound to the antibody; and
(ii) a method for quantification of the protein of the present invention in a test sample fluid, which comprises reacting the test sample fluid simultaneously or continuously with the antibody of the present invention immobilized on a carrier and a labeled form of the antibody of the present invention, and then measuring the activity of the labeling agent on the insoluble carrier.
In the quantification method in the above-mentioned (ii), it is desirable that one antibody is an antibody recognizing the N-terminal region of the protein of the present invention, and the other antibody is an antibody reacting with the C-terminal region of the protein of the present invention.
The monoclonal antibody to the protein of the present invention (hereinafter sometimes referred to as the monoclonal antibody of the present invention) may be used to quantify the protein of the present invention. Besides, the protein of the present invention may also be detected by means of tissue staining. For these purposes, the antibody molecule per se may be used or F(ab′)2, Fab′ or Fab fractions of the antibody molecule may be used as well.
There is no particular limitation to the method of quantifying the protein of the present invention using the antibody of the present invention; any method may be used so far as it relates to a method in which the amount of antibody, antigen or antibody-antigen complex can be detected by a chemical or a physical means, depending on or corresponding to the amount of antigen (e.g., the amount of the protein) in a test sample fluid to be assayed, and then calculated using a standard curve prepared by a standard solution containing the known amount of antigen. Advantageously used are, for example, nephrometry, competitive method, immunometric method and sandwich method; in terms of sensitivity and specificity, the sandwich method, which will be later described, is particularly preferred.
Examples of the labeling agent used in the assay method using the labeling substance are radioisotopes (for example, [125I], [131I], [3I], [14C] etc.), fluorescent substances [for example, cyanine fluorescent dyes (e.g., Cy2, Cy3, Cy5, Cy5.5, Cy7 (Amersham Bioscience) etc), fluorescamine, fluorescein isothiocyanate etc.], enzymes (for example, β-galactosidase, β-glucosidase, alkaline phosphatase, peroxidase, malate dehydrogenase etc), luminescent substances (for example, luminol, a luminol derivative, luciferin, lucigenin etc.), biotin, and lanthanide elements. Furthermore, the biotin-avidin system may also be used for binding of an antibody or antigen to a labeling agent.
For immobilization of antigen or antibody, physical adsorption may be used. Chemical binding methods conventionally used for insolubilization or immobilization of proteins or enzymes may also be used. For the carrier, for example, insoluble polysaccharides such as agarose, dextran, cellulose, etc.; synthetic resin such as polystyrene, polyacrylamide, silicon, etc., and glass or the like. are used.
In the sandwich method, the immobilized monoclonal antibody of the present invention is reacted with a test fluid (primary reaction), then with the labeled monoclonal antibody of the present invention (secondary reaction), and the activity of the label on the immobilizing carrier is measured, whereby the amount of the protein of the present invention in the test fluid can be quantified. The order of the primary and secondary reactions may be reversed, and the reactions may be performed simultaneously or with an interval. The methods of labeling and immobilization can be performed by the methods described above. In the immunoassay by the sandwich method, the antibody used for immobilized or labeled antibodies is not necessarily one species, but a mixture of two or more species of antibody may be used to increase the measurement sensitivity.
In the method for assaying the protein of the present invention by the sandwich method according to the present invention, preferred monoclonal antibodies of the present invention used for the primary and the secondary reactions are antibodies whose binding sites to the protein of the present invention are different from one another. Thus, the antibodies used in the primary and the secondary reactions are those wherein, when the antibody used in the secondary reaction recognizes the C-terminal region of the protein of the present invention, the antibody recognizing the site other than the C-terminal region, e.g., recognizing the N-terminal region, is preferably used in the primary reaction.
The monoclonal antibody of the present invention may be used in an assay system other than the sandwich method, such as a competitive method, an immunometric method, nephrometry, etc.
In the competitive method, an antigen in a test sample fluid and a labeled antigen are competitively reacted with an antibody, then the unreacted labeled antigen (F) and the labeled antigen bound to the antibody (B) are separated (B/F separation) and the labeled amount of either B or F is measured to determine the amount of the antigen in the test sample fluid. In the reactions for such a method, there are a liquid phase method in which a soluble antibody is used as the antibody and the B/F separation is effected by polyethylene glycol while a second antibody to the antibody described above is used, and a solid phase method in which an immobilized antibody is used as the first antibody or a soluble antibody is used as the first antibody while an immobilized antibody is used as the second antibody.
In the immunometric method, an antigen in a test sample fluid and an immobilized antigen are competitively reacted with a given amount of a labeled antibody followed by separating the solid phase from the liquid phase; or an antigen in a test sample fluid and an excess amount of labeled antibody are reacted, then an immobilized antigen is added to bind an unreacted labeled antibody to the solid phase, and the solid phase is separated from the liquid phase. Thereafter, the labeled amount of any of the phases is measured to determine the antigen amount in the test sample fluid.
In the nephrometry, the amount of insoluble sediment, which is produced as a result of the antigen-antibody reaction in a gel or in a solution, is measured. Even when the amount of an antigen in a test sample fluid is small and only a small amount of the sediment is obtained, laser nephrometry utilizing laser scattering can be suitably used.
In applying each of those immunoassays to the quantification method of the present invention, any special conditions or operations are not required to set forth. The assay system for the protein of the present invention may be constructed in addition to conditions or operations conventionally used for each of the methods, taking the technical consideration by one skilled in the art into account. For the details of such conventional technical means, a variety of reviews, reference books, etc. may be referred to (for example, Hiroshi Irie (ed.): “Radioimmunoassay” (published by Kodansha, 1974); Hiroshi Irie (ed.): “Radioimmunoassay; Second Series” (published by Kodansha, 1979); Eiji Ishikawa, et al. (ed.): “Enzyme Immunoassay” (published by Igaku Shoin, 1978); Eiji Ishikawa, et al. (ed.): “Enzyme Immunoassay” (Second Edition) (published by Igaku Shoin, 1982); Eiji Ishikawa, et al. (ed.): “Enzyme Immunoassay” (Third Edition) (published by Igaku Shoin, 1987); “Methods in Enzymology” Vol. 70 (Immuochemical Techniques (Part A)); ibid., Vol. 73 (Immunochemical Techniques (Part B)); ibid., Vol. 74 (Immunochemical Techniques (Part C)); ibid., Vol. 84 (Immunochemical Techniques (Part D: Selected Immunoassays)); ibid., Vol. 92 (Immunochemical Techniques (Part E: Monoclonal Antibodies and General Immunoassay Methods)); ibid., Vol. 121 (Immunochemical Techniques (Part I: Hybridoma Technology and Monoclonal Antibodies)) (published by Academic Press); etc.)
As described above, the protein of the present invention can be quantified with high sensitivity, using the antibody of the present invention.
When a reduction in the concentration of the protein A of the present invention is detected by quantifying the concentration of the protein A of the invention with the antibody of the present invention, it can be diagnosed that there highly likely occur diseases such as hyperlipemia, genital diseases (e.g., prostatic hypertrophy, prostatitis, testis neurosis, ovarian cystoma etc.), digestive diseases (e.g., irritable bowel syndrome, ulcerous colitis, Crohn's disease, ischemic colitis, gastritis, digestive ulcer, rectitis, reflux esophagitis, duodenitis etc.), respiratory diseases (e.g., chronic obstructive pulmonary disease, bronchial asthma etc.), autoimmune diseases (e.g., myasthenia gravis, glomerulonephritis, multiple sclerosis, Sjogren's syndrome, systemic lupus erythematosus etc.), allergic diseases (e.g., pollinosis, allergic rhinitis, anaphylactic shock, atopic dermatitis etc.), rheumatoid diseases (e.g., chronic articular rheumatism, osteoarthritis, gout etc.), thymic diseases, immune disorders (e.g., immune disorders accompanying leukocyte abnormalities, spleen function insufficiency or thymic abnormalities), diabetes, hypothyroidism, circulatory diseases (e.g., cardiac insufficiency, arrhythmia, long QT syndrome, arteriosclerosis, angina etc.), pancreatic diseases (e.g., pancreatic function insufficiency such as pancreatitis, pancreatic cystic fibrosis etc.), cancers (e.g., testis tumor, ovarian cancer, breast cancer, esophagus cancer, lung cancer, kidney cancer, hepatoma, non-small cell lung cancer, prostate cancer, stomach cancer, bladder cancer, uterine cervix cancer, colon cancer, rectum cancer, pancreatic cancer, thymoma, myoma etc.) etc., preferably hyperlipemia, arteriosclerosis, genital diseases, digestive diseases etc. On the other hand, when an increase in the concentration of the protein A of the present invention is detected, it can be diagnosed that there highly likely occur diseases such as hyperlipemia, genital diseases (e.g., prostatic hypertrophy, prostatitis, testis neurosis, ovarian cystoma etc.), digestive diseases (e.g., irritable bowel syndrome, ulcerous colitis, Crohn's disease, ischemic colitis, gastritis, digestive ulcer, rectitis, reflux esophagitis, duodenitis etc.), respiratory diseases (e.g., chronic obstructive pulmonary disease, bronchial asthma etc.), autoimmune diseases (e.g., myasthenia gravis, glomerulonephritis, multiple sclerosis, Sjogren's syndrome, systemic lupus erythematosus etc.), allergic diseases (e.g., pollinosis, allergic rhinitis, anaphylactic shock, atopic dermatitis etc.), rheumatoid diseases (e.g., chronic articular rheumatism, osteoarthritis, gout etc.), thymic diseases, immune disorders (e.g., immune disorders accompanying leukocyte abnormalities, spleen function insufficiency or thymic abnormalities), diabetes, hypothyroidism, circulatory diseases (e.g., cardiac insufficiency, arrhythmia, long QT syndrome, arteriosclerosis, angina etc.), pancreatic diseases (e.g., pancreatic function insufficiency such as pancreatitis, pancreatic cystic fibrosis etc.), cancers (e.g., testis tumor, ovarian cancer, breast cancer, esophagus cancer, lung cancer, kidney cancer, hepatoma, non-small cell lung cancer, prostate cancer, stomach cancer, bladder cancer, uterine cervix cancer, colon cancer, rectum cancer, pancreatic cancer, thymoma, myoma etc.) etc., preferably hyperlipemia, arteriosclerosis, genital diseases, digestive diseases etc.
When a reduction in the concentration of the protein B of the present invention is detected by quantifying the concentration of the protein B of the invention with the antibody of the present invention, it can be diagnosed that there highly likely occur diseases such as renal diseases (e.g., renal insufficiency, uremia etc.), digestive diseases (e.g., irritable bowel syndrome, ulcerous colitis, Crohn's disease, ischemic colitis, gastritis, digestive ulcer, rectitis, reflux esophagitis, duodenitis etc.), respiratory diseases (e.g., chronic obstructive pulmonary disease, asthma etc.), pancreatic diseases (e.g., pancreatic function insufficiency such as pancreatitis, pancreatic cystic fibrosis etc.), autoimmune diseases (e.g., myasthenia gravis, glomerulonephritis, multiple sclerosis, Sjogren's syndrome, systemic lupus erythematosus etc.), allergic diseases (e.g., pollinosis, allergic rhinitis, anaphylactic shock, atopic dermatitis etc.), rheumatoid diseases (e.g., chronic articular rheumatism, osteoarthritis, gout etc.), thymic diseases, immune disorders (e.g., immune disorders accompanying leukocyte abnormalities, spleen function insufficiency or thymic abnormalities), genital diseases (e.g., prostatic hypertrophy, prostatitis, testis neurosis, ovarian cystoma etc.), spleen diseases, cancers (e.g., testis tumor, ovarian cancer, breast cancer, esophagus cancer, lung cancer, kidney cancer, hepatoma, non-small cell lung cancer, prostate cancer, stomach cancer, bladder cancer, uterine cervix cancer, colon cancer, rectum cancer, pancreatic cancer, thymoma, myoma etc.), diabetes, hypertension, ischemia-reperfusion injury, central nerve diseases (e.g., Alzheimer's disease, Parkinson's syndrome, schizophrenia, cerebral vascular dementia, cerebral ischemia, epilepsy etc.), preferably respiratory diseases, renal diseases, digestive diseases etc. On the other hand, when an increase in the concentration of the protein B of the present invention is detected, it can be diagnosed that there highly likely occur diseases such as renal diseases (e.g., renal insufficiency, uremia etc.), digestive diseases (e.g., irritable bowel syndrome, ulcerous colitis, Crohn's disease, ischemic colitis, gastritis, digestive ulcer, rectitis, reflux esophagitis, duodenitis etc.), respiratory diseases (e.g., chronic obstructive pulmonary disease, asthma etc.), pancreatic diseases (e.g., pancreatic function insufficiency such as pancreatitis, pancreatic cystic fibrosis etc.), autoimmune diseases (e.g., myasthenia gravis, glomerulonephritis, multiple sclerosis, Sjogren's syndrome, systemic lupus erythematosus etc.), allergic diseases (e.g., pollinosis, allergic rhinitis, anaphylactic shock, atopic dermatitis etc.), rheumatoid diseases (e.g., chronic articular rheumatism, osteoarthritis, gout etc.), thymic diseases, immune disorders (e.g., immune disorders accompanying leukocyte abnormalities, spleen function insufficiency or thymic abnormalities), genital diseases (e.g., prostatic hypertrophy, prostatitis, testis neurosis, ovarian cystoma etc.), spleen diseases, cancers (e.g., testis tumor, ovarian cancer, breast cancer, esophagus cancer, lung cancer, kidney cancer, hepatoma, non-small cell lung cancer, prostate cancer, stomach cancer, bladder cancer, uterine cervix cancer, colon cancer, rectum cancer, pancreatic cancer, thymoma, myoma etc.), diabetes, hypertension, ischemia-reperfusion injury, central nerve diseases (e.g., Alzheimer's disease, Parkinson's syndrome, schizophrenia, cerebral vascular dementia, cerebral ischemia, epilepsy etc.) etc., preferably respiratory diseases, renal diseases, digestive diseases etc.
When a reduction in the concentration of the protein C of the present invention is detected by quantifying the concentration of the protein D of the invention with the antibody of the present invention, it can be diagnosed that there highly likely occur diseases such as pancreatic diseases (e.g., pancreatic function insufficiency such as pancreatitis, pancreatic cystic fibrosis etc.), genital diseases (e.g., prostatic hypertrophy, prostatitis, testis neurosis, ovarian cystoma etc.), central nerve diseases (e.g., Alzheimer's disease, Parkinson's syndrome, schizophrenia, cerebral vascular dementia, cerebral ischemia, epilepsy etc.), digestive diseases (e.g., irritable bowel syndrome, ulcerous colitis, Crohn's disease, ischemic colitis, gastritis, digestive ulcer, rectitis, reflux esophagitis, duodenitis etc.), respiratory diseases (e.g., chronic obstructive pulmonary disease, asthma etc.), diabetes, hyperlipemia, cholestasis, or cancers (e.g., testis tumor, ovarian cancer, breast cancer, esophagus cancer, lung cancer, kidney cancer, hepatoma, non-small cell lung cancer, prostate cancer, stomach cancer, bladder cancer, uterine cervix cancer, colon cancer, rectum cancer, pancreatic cancer, thymoma, myoma etc.) etc., preferably pancreatic diseases, central nerve diseases, digestive diseases, respiratory diseases etc. On the other hand, when an increase in the concentration of the protein C of the present invention is detected, it can be diagnosed that there highly likely occur diseases such as pancreatic diseases (e.g., pancreatic function insufficiency such as pancreatitis, pancreatic cystic fibrosis etc.), genital diseases (e.g., prostatic hypertrophy, prostatitis, testis neurosis, ovarian cystoma etc.), central nerve diseases (e.g., Alzheimer's disease, Parkinson's syndrome, schizophrenia, cerebral vascular dementia, cerebral ischemia, epilepsy etc.), digestive diseases (e.g., irritable bowel syndrome, ulcerous colitis, Crohn's disease, ischemic colitis, gastritis, digestive ulcer, rectitis, reflux esophagitis, duodenitis etc.), respiratory diseases (e.g., chronic obstructive pulmonary disease, asthma etc.), diabetes, hyperlipemia, cholestasis, or cancers (e.g., testis tumor, ovarian cancer, breast cancer, esophagus cancer, lung cancer, kidney cancer, hepatoma, non-small cell lung cancer, prostate cancer, stomach cancer, bladder cancer, uterine cervix cancer, colon cancer, rectum cancer, pancreatic cancer, thymoma, myoma etc.) etc., preferably pancreatic diseases, central nerve diseases, digestive diseases, respiratory diseases etc.
When a reduction in the concentration of the protein D of the present invention is detected by quantifying the concentration of the protein D of the invention with the antibody of the present invention, it can be diagnosed that there highly likely occur diseases such as inflammatory diseases (e.g., septicemia, pneumonia, encephalitis, meningitis, hepatitis, myocarditis, pleurisy etc.), autoimmune diseases (e.g., myasthenia gravis, glomerulonephritis, multiple sclerosis, Sjogren's syndrome, systemic lupus erythematosus etc.), allergic diseases (e.g., pollinosis, allergic rhinitis, anaphylactic shock, atopic dermatitis etc.), rheumatoid diseases (e.g., chronic articular rheumatism, osteoarthritis, gout etc.), diabetic neurosis, thymic diseases, immune disorders (e.g., immune disorders accompanying leukocyte abnormalities, spleen function insufficiency or thymic abnormalities), digestive diseases (e.g., irritable bowel syndrome, ulcerous colitis, Crohn's disease, ischemic colitis, gastritis, digestive ulcer, rectitis, reflux esophagitis, duodenitis etc.), respiratory diseases (e.g., chronic obstructive pulmonary disease, asthma etc.), circulatory diseases (e.g., cardiac insufficiency, arrhythmia, long QT syndrome, arteriosclerosis, angina etc.), hepatic diseases (e.g., hepatocirrhosis etc.), renal diseases (e.g., renal insufficiency, uremia etc.), muscular diseases (e.g., muscular dystrophy etc.), pancreatic diseases (e.g., pancreatic function insufficiency such as pancreatitis, pancreatic cystic fibrosis etc.), genital diseases (e.g., prostatic hypertrophy, prostatitis, testis neurosis, ovarian cystoma etc.), burns, pain syndrome (e.g., cancerous sharp pain, referred pain etc.), cancers (e.g., testis tumor, ovarian cancer, breast cancer, esophagus cancer, lung cancer, kidney cancer, hepatoma, non-small cell lung cancer, prostate cancer, stomach cancer, bladder cancer, uterine cervix cancer, colon cancer, rectum cancer, pancreatic cancer, thymoma, myoma etc.) etc., preferably inflammatory diseases, rheumatoid diseases and diabetic neurosis. On the other hand, when an increase in the concentration of the protein D of the present invention is detected, it can be diagnosed that there highly likely occur diseases such as inflammatory diseases (e.g., septicemia, pneumonia, encephalitis, meningitis, hepatitis, myocarditis, pleurisy etc.), autoimmune diseases (e.g., myasthenia gravis, glomerulonephritis, multiple sclerosis, Sjogren's syndrome, systemic lupus erythematosus etc.), allergic diseases (e.g., pollinosis, allergic rhinitis, anaphylactic shock, atopic dermatitis etc.), rheumatoid diseases (e.g., chronic articular rheumatism, osteoarthritis, gout etc.), diabetic neurosis, thymic diseases, immune disorders (e.g., immune disorders accompanying leukocyte abnormalities, spleen function insufficiency or thymic abnormalities), digestive diseases (e.g., irritable bowel syndrome, ulcerous colitis, Crohn's disease, ischemic colitis, gastritis, digestive ulcer, rectitis, reflux esophagitis, duodenitis etc.), respiratory diseases (e.g., chronic obstructive pulmonary disease, asthma etc.), circulatory diseases (e.g., cardiac insufficiency, arrhythmia, long QT syndrome, arteriosclerosis, angina etc.), hepatic diseases (e.g., hepatocirrhosis etc.), renal diseases (e.g., renal insufficiency, uremia etc.), muscular diseases (e.g., muscular dystrophy etc.), pancreatic diseases (e.g., pancreatic function insufficiency such as pancreatitis, pancreatic cystic fibrosis etc.), genital diseases (e.g., prostatic hypertrophy, prostatitis, testis neurosis, ovarian cystoma etc.), burns, pain syndrome (e.g., cancerous sharp pain, referred pain etc.), cancers (e.g., testis tumor, ovarian cancer, breast cancer, esophagus cancer, lung cancer, kidney cancer, hepatoma, non-small cell lung cancer, prostate cancer, stomach cancer, bladder cancer, uterine cervix cancer, colon cancer, rectum cancer, pancreatic cancer, thymoma, myoma etc.) etc., preferably inflammatory diseases, rheumatoid diseases, diabetic neurosis etc.
The antibodies of the present invention can also be used for specifically detecting the protein of the present invention present in test samples such as body fluids or tissues. The antibodies may also be used for preparation of antibody columns for purification of the protein of the present invention, for detection of the protein of the present invention in each fraction upon purification, and for analysis of the behavior of the protein of the present invention in the test cells.
[4] Gene Diagnostic AgentBy using the DNA of the present invention as a probe, an abnormality (gene abnormality) of the DNA or mRNA encoding the protein of the present invention or its partial peptide in human or non-human warm-blooded animals (e.g., rat, mouse, guinea pig, rabbit, chicken, sheep, swine, bovine, horse, cat, dog, monkey, chimpanzee etc.) can be detected. Therefore, the DNA of the present invention is useful as a gene diagnostic agent for the damage against the DNA or mRNA, its mutation, or its decreased expression, or increased expression or over-expression of the DNA or mRNA.
The gene diagnosis described above using the DNA of the present invention can be performed by, for example, the publicly known Northern hybridization assay or the PCR-SSCP assay (Genomics, 5, 874-879 (1989); Proceedings of the National Academy of Sciences of the United States of America, 86, 2766-2770 (1989)).
For example, when the increased expression of the protein A gene of the present invention is detected by Northern hybridization, it can be diagnosed that there highly likely occur diseases such as hyperlipemia, genital diseases (e.g., prostatic hypertrophy, prostatitis, testis neurosis, ovarian cystoma etc.), digestive diseases (e.g., irritable bowel syndrome, ulcerous colitis, Crohn's disease, ischemic colitis, gastritis, digestive ulcer, rectitis, reflux esophagitis, duodenitis etc.), respiratory diseases (e.g., chronic obstructive pulmonary disease, bronchial asthma etc.), autoimmune diseases (e.g., myasthenia gravis, glomerulonephritis, multiple sclerosis, Sjogren's syndrome, systemic lupus erythematosus etc.), allergic diseases (e.g., pollinosis, allergic rhinitis, anaphylactic shock, atopic dermatitis etc.), rheumatoid diseases (e.g., chronic articular rheumatism, osteoarthritis, gout etc.), thymic diseases, immune disorders (e.g., immune disorders accompanying leukocyte abnormalities, spleen function insufficiency or thymic abnormalities), diabetes, hypothyroidism, circulatory diseases (e.g., cardiac insufficiency, arrhythmia, long QT syndrome, arteriosclerosis, angina etc.), pancreatic diseases (e.g., pancreatic function insufficiency such as pancreatitis, pancreatic cystic fibrosis etc.), cancers (e.g., testis tumor, ovarian cancer, breast cancer, esophagus cancer, lung cancer, kidney cancer, hepatoma, non-small cell lung cancer, prostate cancer, stomach cancer, bladder cancer, uterine cervix cancer, colon cancer, rectum cancer, pancreatic cancer, thymoma, myoma etc.) etc., preferably hyperlipemia, arteriosclerosis, genital diseases, digestive diseases etc. On the other hand, when a reduction in the expression is detected or when a mutation in the DNA is detected by PCR-SSCP, it can be diagnosed that there highly likely occur diseases such as hyperlipemia, genital diseases (e.g., prostatic hypertrophy, prostatitis, testis neurosis, ovarian cystoma etc.), digestive diseases (e.g., irritable bowel syndrome, ulcerous colitis, Crohn's disease, ischemic colitis, gastritis, digestive ulcer, rectitis, reflux esophagitis, duodenitis etc.), respiratory diseases (e.g., chronic obstructive pulmonary disease, bronchial asthma etc.), autoimmune diseases (e.g., myasthenia gravis, glomerulonephritis, multiple sclerosis, Sjogren's syndrome, systemic lupus erythematosus etc.), allergic diseases (e.g., pollinosis, allergic rhinitis, anaphylactic shock, atopic dermatitis etc.), rheumatoid diseases (e.g., chronic articular rheumatism, osteoarthritis, gout etc.), thymic diseases, immune disorders (e.g., immune disorders accompanying leukocyte abnormalities, spleen function insufficiency or thymic abnormalities), diabetes, hypothyroidism, circulatory diseases (e.g., cardiac insufficiency, arrhythmia, long QT syndrome, arteriosclerosis, angina etc.), pancreatic diseases (e.g., pancreatic function insufficiency such as pancreatitis, pancreatic cystic fibrosis etc.), cancers (e.g., testis tumor, ovarian cancer, breast cancer, esophagus cancer, lung cancer, kidney cancer, hepatoma, non-small cell lung cancer, prostate cancer, stomach cancer, bladder cancer, uterine cervix cancer, colon cancer, rectum cancer, pancreatic cancer, thymoma, myoma etc.) etc., preferably hyperlipemia, arteriosclerosis, genital diseases, digestive diseases etc.
For example, when the increased expression of the protein B gene of the present invention is detected by Northern hybridization, it can be diagnosed that there highly likely occur diseases such as renal diseases (e.g., renal insufficiency, uremia etc.), digestive diseases (e.g., irritable bowel syndrome, ulcerous colitis, Crohn's disease, ischemic colitis, gastritis, digestive ulcer, rectitis, reflux esophagitis, duodenitis etc.), respiratory diseases (e.g., chronic obstructive pulmonary disease, asthma etc.), pancreatic diseases (e.g., pancreatic function insufficiency such as pancreatitis, pancreatic cystic fibrosis etc.), autoimmune diseases (e.g., myasthenia gravis, glomerulonephritis, multiple sclerosis, Sjogren's syndrome, systemic lupus erythematosus etc.), allergic diseases (e.g., pollinosis, allergic rhinitis, anaphylactic shock, atopic dermatitis etc.), rheumatoid diseases (e.g., chronic articular rheumatism, osteoarthritis, gout etc.), thymic diseases, immune disorders (e.g., immune disorders accompanying leukocyte abnormalities, spleen function insufficiency or thymic abnormalities), genital diseases (e.g., prostatic hypertrophy, prostatitis, testis neurosis, ovarian cystoma etc.), spleen diseases, cancers (e.g., testis tumor, ovarian cancer, breast cancer, esophagus cancer, lung cancer, kidney cancer, hepatoma, non-small cell lung cancer, prostate cancer, stomach cancer, bladder cancer, uterine cervix cancer, colon cancer, rectum cancer, pancreatic cancer, thymoma, myoma etc.), diabetes, hypertension, ischemia-reperfusion injury, central nerve diseases (e.g., Alzheimer's disease, Parkinson's syndrome, schizophrenia, cerebral vascular dementia, cerebral ischemia, epilepsy etc.) etc., preferably respiratory diseases, renal diseases, digestive diseases etc. On the other hand, a reduction in the expression is detected or when a mutation in the DNA is detected by PCR-SSCP, it can be diagnosed that there highly likely occur diseases such as renal diseases (e.g., renal insufficiency, uremia etc.), digestive diseases (e.g., irritable bowel syndrome, ulcerous colitis, Crohn's disease, ischemic colitis, gastritis, digestive ulcer, rectitis, reflux esophagitis, duodenitis etc.), respiratory diseases (e.g., chronic obstructive pulmonary disease, asthma etc.), pancreatic diseases (e.g., pancreatic function insufficiency such as pancreatitis, pancreatic cystic fibrosis etc.), autoimmune diseases (e.g., myasthenia gravis, glomerulonephritis, multiple sclerosis, Sjogren's syndrome, systemic lupus erythematosus etc.), allergic diseases (e.g., pollinosis, allergic rhinitis, anaphylactic shock, atopic dermatitis etc.), rheumatoid diseases (e.g., chronic articular rheumatism, osteoarthritis, gout etc.), thymic diseases, immune disorders (e.g., immune disorders accompanying leukocyte abnormalities, spleen function insufficiency or thymic abnormalities), genital diseases (e.g., prostatic hypertrophy, prostatitis, testis neurosis, ovarian cystoma etc.), spleen diseases, cancers (e.g., testis tumor, ovarian cancer, breast cancer, esophagus cancer, lung cancer, kidney cancer, hepatoma, non-small cell lung cancer, prostate cancer, stomach cancer, bladder cancer, uterine cervix cancer, colon cancer, rectum cancer, pancreatic cancer, thymoma, myoma etc.), diabetes, hypertension, ischemia-reperfusion injury, central nerve diseases (e.g., Alzheimer's disease, Parkinson's syndrome, schizophrenia, cerebral vascular dementia, cerebral ischemia, epilepsy etc.) etc., preferably respiratory diseases, renal diseases, digestive diseases etc.
For example, when the increased expression of the protein C gene of the present invention is detected by Northern hybridization, it can be diagnosed that there highly likely occur diseases such as pancreatic diseases (e.g., pancreatic function insufficiency such as pancreatitis, pancreatic cystic fibrosis etc.), genital diseases (e.g., prostatic hypertrophy, prostatitis, testis neurosis, ovarian cystoma etc.), central nerve diseases (e.g., Alzheimer's disease, Parkinson's syndrome, schizophrenia, cerebral vascular dementia, cerebral ischemia, epilepsy etc.), digestive diseases (e.g., irritable bowel syndrome, ulcerous colitis, Crohn's disease, ischemic colitis, gastritis, digestive ulcer, rectitis, reflux esophagitis, duodenitis etc.), respiratory diseases (e.g., chronic obstructive pulmonary disease, asthma etc.), diabetes, hyperlipemia, cholestasis, or cancers (e.g., testis tumor, ovarian cancer, breast cancer, esophagus cancer, lung cancer, kidney cancer, hepatoma, non-small cell lung cancer, prostate cancer, stomach cancer, bladder cancer, uterine cervix cancer, colon cancer, rectum cancer, pancreatic cancer, thymoma, myoma etc.) etc., preferably pancreatic diseases, central nerve diseases, digestive diseases, respiratory diseases etc. On the other hand, a reduction in the expression is detected or when a mutation in the DNA is detected by PCR-SSCP, it can be diagnosed that there highly likely occur diseases such as pancreatic diseases (e.g., pancreatic function insufficiency such as pancreatitis, pancreatic cystic fibrosis etc.), genital diseases (e.g., prostatic hypertrophy, prostatitis, testis neurosis, ovarian cystoma etc.), central nerve diseases (e.g., Alzheimer's disease, Parkinson's syndrome, schizophrenia, cerebral vascular dementia, cerebral ischemia, epilepsy etc.), digestive diseases (e.g., irritable bowel syndrome, ulcerous colitis, Crohn's disease, ischemic colitis, gastritis, digestive ulcer, rectitis, reflux esophagitis, duodenitis etc.), respiratory diseases (e.g., chronic obstructive pulmonary disease, asthma etc.), diabetes, hyperlipemia, cholestasis, or cancers (e.g., testis tumor, ovarian cancer, breast cancer, esophagus cancer, lung cancer, kidney cancer, hepatoma, non-small cell lung cancer, prostate cancer, stomach cancer, bladder cancer, uterine cervix cancer, colon cancer, rectum cancer, pancreatic cancer, thymoma, myoma etc.) etc., preferably pancreatic diseases, central nerve diseases, digestive diseases, respiratory diseases etc.
For example, when the increased expression of the protein D gene of the present invention is detected by Northern hybridization, it can be diagnosed that there highly likely occur diseases such as inflammatory diseases (e.g., septicemia, pneumonia, encephalitis, meningitis, hepatitis, myocarditis, pleurisy etc.), autoimmune diseases (e.g., myasthenia gravis, glomerulonephritis, multiple sclerosis, Sjogren's syndrome, systemic lupus erythematosus etc.), allergic diseases (e.g., pollinosis, allergic rhinitis, anaphylactic shock, atopic dermatitis etc.), rheumatoid diseases (e.g., chronic articular rheumatism, osteoarthritis, gout etc.), diabetic neurosis, thymic diseases, immune disorders (e.g., immune disorders accompanying leukocyte abnormalities, spleen function insufficiency or thymic abnormalities), digestive diseases (e.g., irritable bowel syndrome, ulcerous colitis, Crohn's disease, ischemic colitis, gastritis, digestive ulcer, rectitis, reflux esophagitis, duodenitis etc.), respiratory diseases (e.g., chronic obstructive pulmonary disease, asthma etc.), circulatory diseases (e.g., cardiac insufficiency, arrhythmia, long QT syndrome, arteriosclerosis, angina etc.), hepatic diseases (e.g., hepatocirrhosis etc.), renal diseases (e.g., renal insufficiency, uremia etc.), muscular diseases (e.g., muscular dystrophy etc.), pancreatic diseases (e.g., pancreatic function insufficiency such as pancreatitis, pancreatic cystic fibrosis etc.), genital diseases (e.g., prostatic hypertrophy, prostatitis, testis neurosis, ovarian cystoma etc.), burns, pain syndrome (e.g., cancerous sharp pain, referred pain etc.), cancers (e.g., testis tumor, ovarian cancer, breast cancer, esophagus cancer, lung cancer, kidney cancer, hepatoma, non-small cell lung cancer, prostate cancer, stomach cancer, bladder cancer, uterine cervix cancer, colon cancer, rectum cancer, pancreatic cancer, thymoma, myoma etc.) etc., preferably inflammatory diseases, rheumatoid diseases, diabetic neurosis etc. On the other hand, a reduction in the expression is detected or when a mutation in the DNA is detected by PCR-SSCP, it can be diagnosed that there highly likely occur diseases such as inflammatory diseases (e.g., septicemia, pneumonia, encephalitis, meningitis, hepatitis, myocarditis, pleurisy etc.), autoimmune diseases (e.g., myasthenia gravis, glomerulonephritis, multiple sclerosis, Sjogren's syndrome, systemic lupus erythematosus etc.), allergic diseases (e.g., pollinosis, allergic rhinitis, anaphylactic shock, atopic dermatitis etc.), rheumatoid diseases (e.g., chronic articular rheumatism, osteoarthritis, gout etc.), diabetic neurosis, thymic diseases, immune disorders (e.g., immune disorders accompanying leukocyte abnormalities, spleen function insufficiency or thymic abnormalities), digestive diseases (e.g., irritable bowel syndrome, ulcerous colitis, Crohn's disease, ischemic colitis, gastritis, digestive ulcer, rectitis, reflux esophagitis, duodenitis etc.), respiratory diseases (e.g., chronic obstructive pulmonary disease, asthma etc.), circulatory diseases (e.g., cardiac insufficiency, arrhythmia, long QT syndrome, arteriosclerosis, angina etc.), hepatic diseases (e.g., hepatocirrhosis etc.), renal diseases (e.g., renal insufficiency, uremia etc.), muscular diseases (e.g., muscular dystrophy etc.), pancreatic diseases (e.g., pancreatic function insufficiency such as pancreatitis, pancreatic cystic fibrosis etc.), genital diseases (e.g., prostatic hypertrophy, prostatitis, testis neurosis, ovarian cystoma etc.), burns, pain syndrome (e.g., cancerous sharp pain, referred pain etc.), cancers (e.g., testis tumor, ovarian cancer, breast cancer, esophagus cancer, lung cancer, kidney cancer, hepatoma, non-small cell lung cancer, prostate cancer, stomach cancer, bladder cancer, uterine cervix cancer, colon cancer, rectum cancer, pancreatic cancer, thymoma, myoma etc.) etc., preferably inflammatory diseases, rheumatoid diseases, diabetic neurosis etc.
[5] Medicine Comprising the Antisense PolynucleotideThe antisense polynucleotide of the present invention that binds complementarily to the DNA encoding the protein A of the present invention to inhibit expression of the DNA is low-toxic and can suppress the functions and activity of the protein or DNA in the body, and can thus be used as a medicine such as a prophylactic/therapeutic agent for diseases such as hyperlipemia, genital diseases (e.g., prostatic hypertrophy, prostatitis, testis neurosis, ovarian cystoma etc.), digestive diseases (e.g., irritable bowel syndrome, ulcerous colitis, Crohn's disease, ischemic colitis, gastritis, digestive ulcer, rectitis, reflux esophagitis, duodenitis etc.), respiratory diseases (e.g., chronic obstructive pulmonary disease, bronchial asthma etc.), autoimmune diseases (e.g., myasthenia gravis, glomerulonephritis, multiple sclerosis, Sjogren's syndrome, systemic lupus erythematosus etc.), allergic diseases (e.g., pollinosis, allergic rhinitis, anaphylactic shock, atopic dermatitis etc.), rheumatoid diseases (e.g., chronic articular rheumatism, osteoarthritis, gout etc.), thymic diseases, immune disorders (e.g., immune disorders accompanying leukocyte abnormalities, spleen function insufficiency or thymic abnormalities), diabetes, hypothyroidism, circulatory diseases (e.g., cardiac insufficiency, arrhythmia, long QT syndrome, arteriosclerosis, angina etc.), pancreatic diseases (e.g., pancreatic function insufficiency such as pancreatitis, pancreatic cystic fibrosis etc.), cancers (e.g., testis tumor, ovarian cancer, breast cancer, esophagus cancer, lung cancer, kidney cancer, hepatoma, non-small cell lung cancer, prostate cancer, stomach cancer, bladder cancer, uterine cervix cancer, colon cancer, rectum cancer, pancreatic cancer, thymoma, myoma etc.) etc, preferably hyperlipemia, arteriosclerosis, genital diseases, digestive diseases etc.
The antisense polynucleotide of the present invention that binds complementarily to the DNA encoding the protein B of the present invention to inhibit expression of the DNA is low-toxic and can suppress the functions and activity of the protein or DNA in the body, and can thus be used as a medicine such as a prophylactic/therapeutic agent for diseases such as renal diseases (e.g., renal insufficiency, uremia etc.), digestive diseases (e.g., irritable bowel syndrome, ulcerous colitis, Crohn's disease, ischemic colitis, gastritis, digestive ulcer, rectitis, reflux esophagitis, duodenitis etc.), respiratory diseases (e.g., chronic obstructive pulmonary disease, asthma etc.), pancreatic diseases (e.g., pancreatic function insufficiency such as pancreatitis, pancreatic cystic fibrosis etc.), autoimmune diseases (e.g., myasthenia gravis, glomerulonephritis, multiple sclerosis, Sjogren's syndrome, systemic lupus erythematosus etc.), allergic diseases (e.g., pollinosis, allergic rhinitis, anaphylactic shock, atopic dermatitis etc.), rheumatoid diseases (e.g., chronic articular rheumatism, osteoarthritis, gout etc.), thymic diseases, immune disorders (e.g., immune disorders accompanying leukocyte abnormalities, spleen function insufficiency or thymic abnormalities), genital diseases (e.g., prostatic hypertrophy, prostatitis, testis neurosis, ovarian cystoma etc.), spleen diseases, cancers (e.g., testis tumor, ovarian cancer, breast cancer, esophagus cancer, lung cancer, kidney cancer, hepatoma, non-small cell lung cancer, prostate cancer, stomach cancer, bladder cancer, uterine cervix cancer, colon cancer, rectum cancer, pancreatic cancer, thymoma, myoma etc.), diabetes, hypertension, ischemia-reperfusion injury, central nerve diseases (e.g., Alzheimer's disease, Parkinson's syndrome, schizophrenia, cerebral vascular dementia, cerebral ischemia, epilepsy etc.) etc., preferably respiratory diseases, renal diseases, digestive diseases etc.
The antisense polynucleotide of the present invention that binds complementarily to the DNA encoding the protein C of the present invention to inhibit expression of the DNA is low-toxic and can suppress the functions and activity of the protein or DNA in the body, and can thus be used as a medicine such as a prophylactic/therapeutic agent for diseases such as pancreatic diseases (e.g., pancreatic function insufficiency such as pancreatitis, pancreatic cystic fibrosis etc.), genital diseases (e.g., prostatic hypertrophy, prostatitis, testis neurosis, ovarian cystoma etc.), central nerve diseases (e.g., Alzheimer's disease, Parkinson's syndrome, schizophrenia, cerebral vascular dementia, cerebral ischemia, epilepsy etc.), digestive diseases (e.g., irritable bowel syndrome, ulcerous colitis, Crohn's disease, ischemic colitis, gastritis, digestive ulcer, rectitis, reflux esophagitis, duodenitis etc.), respiratory diseases (e.g., chronic obstructive pulmonary disease, asthma etc.), diabetes, hyperlipemia, cholestasis, or cancers (e.g., testis tumor, ovarian cancer, breast cancer, esophagus cancer, lung cancer, kidney cancer, hepatoma, non-small cell lung cancer, prostate cancer, stomach cancer, bladder cancer, uterine cervix cancer, colon cancer, rectum cancer, pancreatic cancer, thymoma, myoma etc.) etc., preferably pancreatic diseases, central nerve diseases, digestive diseases, respiratory diseases etc.
The antisense polynucleotide of the present invention that binds complementarily to the DNA encoding the protein D of the present invention to inhibit expression of the DNA is low-toxic and can suppress the functions and activity of the protein or DNA in the body, and can thus be used as a medicine such as a prophylactic/therapeutic agent for diseases such as inflammatory diseases (e.g., septicemia, pneumonia, encephalitis, meningitis, hepatitis, myocarditis, pleurisy etc.), autoimmune diseases (e.g., myasthenia gravis, glomerulonephritis, multiple sclerosis, Sjogren's syndrome, systemic lupus erythematosus etc.), allergic diseases (e.g., pollinosis, allergic rhinitis, anaphylactic shock, atopic dermatitis etc.), rheumatoid diseases (e.g., chronic articular rheumatism, osteoarthritis, gout etc.), diabetic neurosis, thymic diseases, immune disorders (e.g., immune disorders accompanying leukocyte abnormalities, spleen function insufficiency or thymic abnormalities), digestive diseases (e.g., irritable bowel syndrome, ulcerous colitis, Crohn's disease, ischemic colitis, gastritis, digestive ulcer, rectitis, reflux esophagitis, duodenitis etc.), respiratory diseases (e.g., chronic obstructive pulmonary disease, asthma etc.), circulatory diseases (e.g., cardiac insufficiency, arrhythmia, long QT syndrome, arteriosclerosis, angina etc.), hepatic diseases (e.g., hepatocirrhosis etc.), renal diseases (e.g., renal insufficiency, uremia etc.), muscular diseases (e.g., muscular dystrophy etc.), pancreatic diseases (e.g., pancreatic function insufficiency such as pancreatitis, pancreatic cystic fibrosis etc.), genital diseases (e.g., prostatic hypertrophy, prostatitis, testis neurosis, ovarian cystoma etc.), burns, pain syndrome (e.g., cancerous sharp pain, referred pain etc.), cancers (e.g., testis tumor, ovarian cancer, breast cancer, esophagus cancer, lung cancer, kidney cancer, hepatoma, non-small cell lung cancer, prostate cancer, stomach cancer, bladder cancer, uterine cervix cancer, colon cancer, rectum cancer, pancreatic cancer, thymoma, myoma etc.) etc., preferably inflammatory diseases, rheumatoid diseases, diabetic neurosis etc.
When the antisense polynucleotide is used as the aforesaid prophylactic/therapeutic agent, it can be formed into a medicine and administered in publicly known methods.
For example, when the antisense polynucleotide is used, the antisense polynucleotide itself, or the antisense polynucleotide inserted into an appropriate vector such as retrovirus vector, adenovirus vector, adenovirus-associated virus vector, etc., is administered orally or parenterally to human or other warm-blooded animal (e.g., rat, rabbit, sheep, swine, bovine, cat, dog, monkey, etc.) in a conventional manner. The antisense polynucleotide may also be administered as it is, or prepared into medicines together with physiologically acceptable carriers such as adjuvants to assist its uptake, and such preparations are administered by gene gun or through a catheter like a hydrogel catheter.
The dose of the antisense polynucleotide may vary depending upon target disease, subject to be administered, route for administration, etc. When the antisense nucleotide is administered topically to a specific digestive organ for the purpose of treatment of hyperlipemia, the antisense polynucleotide is administered to adult (60 kg body weight) usually in a daily dose of approximately 0.1 to 100 mg.
In addition, the antisense polynucleotide may also be employed as an oligonucleotide probe for diagnosis to examine the presence of the DNA of the present invention in tissues or cells, or the states of its expression.
Further, the present invention provides:
(i) double-stranded RNA comprising a part of RNA encoding the protein of the present invention and RNA complementary thereto,
(ii) a medicine comprising the double-stranded RNA,
(iii) ribozyme comprising a part of RNA encoding the protein of the present invention,
(iv) a medicine comprising the ribozyme, and
(v) an expression vector comprising a gene (DNA) encoding the ribozyme.
The double-stranded RNA or the ribozyme, similar to the antisense polynucleotide described above, can destroy RNA transcribed from the DNA of the present invention, or suppress the functions thereof.
The double-stranded RNA or ribozyme which can suppress the functions of the protein A of the present invention or the DNA encoding it can be used as a prophylactic/therapeutic agent for diseases such as hyperlipemia, genital diseases (e.g., prostatic hypertrophy, prostatitis, testis neurosis, ovarian cystoma etc.), digestive diseases (e.g., irritable bowel syndrome, ulcerous colitis, Crohn's disease, ischemic colitis, gastritis, digestive ulcer, rectitis, reflux esophagitis, duodenitis etc.), respiratory diseases (e.g., chronic obstructive pulmonary disease, bronchial asthma etc.), autoimmune diseases (e.g., myasthenia gravis, glomerulonephritis, multiple sclerosis, Sjogren's syndrome, systemic lupus erythematosus etc.), allergic diseases (e.g., pollinosis, allergic rhinitis, anaphylactic shock, atopic dermatitis etc.), rheumatoid diseases (e.g., chronic articular rheumatism, osteoarthritis, gout etc.), thymic diseases, immune disorders (e.g., immune disorders accompanying leukocyte abnormalities, spleen function insufficiency or thymic abnormalities), diabetes, hypothyroidism, circulatory diseases (e.g., cardiac insufficiency, arrhythmia, long QT syndrome, arteriosclerosis, angina etc.), pancreatic diseases (e.g., pancreatic function insufficiency such as pancreatitis, pancreatic cystic fibrosis etc.), cancers (e.g., testis tumor, ovarian cancer, breast cancer, esophagus cancer, lung cancer, kidney cancer, hepatoma, non-small cell lung cancer, prostate cancer, stomach cancer, bladder cancer, uterine cervix cancer, colon cancer, rectum cancer, pancreatic cancer, thymoma, myoma etc.) etc., preferably hyperlipemia, arteriosclerosis, genital diseases, digestive diseases etc.
The double-stranded RNA or ribozyme which can suppress the functions of the protein B of the present invention or the DNA encoding it can be used as a prophylactic/therapeutic agent for diseases such as renal diseases (e.g., renal insufficiency, uremia etc.), digestive diseases (e.g., irritable bowel syndrome, ulcerous colitis, Crohn's disease, ischemic colitis, gastritis, digestive ulcer, rectitis, reflux esophagitis, duodenitis etc.), respiratory diseases (e.g., chronic obstructive pulmonary disease, asthma etc.), pancreatic diseases (e.g., pancreatic function insufficiency such as pancreatitis, pancreatic cystic fibrosis etc.), autoimmune diseases (e.g., myasthenia gravis, glomerulonephritis, multiple sclerosis, Sjogren's syndrome, systemic lupus erythematosus etc.), allergic diseases (e.g., pollinosis, allergic rhinitis, anaphylactic shock, atopic dermatitis etc.), rheumatoid diseases (e.g., chronic articular rheumatism, osteoarthritis, gout etc.), thymic diseases, immune disorders (e.g., immune disorders accompanying leukocyte abnormalities, spleen function insufficiency or thymic abnormalities), genital diseases (e.g., prostatic hypertrophy, prostatitis, testis neurosis, ovarian cystoma etc.), spleen diseases, cancers (e.g., testis tumor, ovarian cancer, breast cancer, esophagus cancer, lung cancer, kidney cancer, hepatoma, non-small cell lung cancer, prostate cancer, stomach cancer, bladder cancer, uterine cervix cancer, colon cancer, rectum cancer, pancreatic cancer, thymoma, myoma etc.), diabetes, hypertension, ischemia-reperfusion injury, central nerve diseases (e.g., Alzheimer's disease, Parkinson's syndrome, schizophrenia, cerebral vascular dementia, cerebral ischemia, epilepsy etc.) etc., preferably respiratory diseases, renal diseases, digestive diseases etc.
The double-stranded RNA or ribozyme which can suppress the functions of the protein C of the present invention or the DNA encoding it can be used as a prophylactic/therapeutic agent for diseases such as pancreatic diseases (e.g., pancreatic function insufficiency such as pancreatitis, pancreatic cystic fibrosis etc.), genital diseases (e.g., prostatic hypertrophy, prostatitis, testis neurosis, ovarian cystoma etc.), central nerve diseases (e.g., Alzheimer's disease, Parkinson's syndrome, schizophrenia, cerebral vascular dementia, cerebral ischemia, epilepsy etc.), digestive diseases (e.g., irritable bowel syndrome, ulcerous colitis, Crohn's disease, ischemic colitis, gastritis, digestive ulcer, rectitis, reflux esophagitis, duodenitis etc.), respiratory diseases (e.g., chronic obstructive pulmonary disease, asthma etc.), diabetes, hyperlipemia, cholestasis, or cancers (e.g., testis tumor, ovarian cancer, breast cancer, esophagus cancer, lung cancer, kidney cancer, hepatoma, non-small cell lung cancer, prostate cancer, stomach cancer, bladder cancer, uterine cervix cancer, colon cancer, rectum cancer, pancreatic cancer, thymoma, myoma etc.) etc., preferably pancreatic diseases, central nerve diseases, digestive diseases, respiratory diseases etc.
The double-stranded RNA or ribozyme which can suppress the functions of the protein D of the present invention or the DNA encoding it can be used as a prophylactic/therapeutic agent for diseases such as inflammatory diseases (e.g., septicemia, pneumonia, encephalitis, meningitis, hepatitis, myocarditis, pleurisy etc.), autoimmune diseases (e.g., myasthenia gravis, glomerulonephritis, multiple sclerosis, Sjogren's syndrome, systemic lupus erythematosus etc.), allergic diseases (e.g., pollinosis, allergic rhinitis, anaphylactic shock, atopic dermatitis etc.), rheumatoid diseases (e.g., chronic articular rheumatism, osteoarthritis, gout etc.), diabetic neurosis, thymic diseases, immune disorders (e.g., immune disorders accompanying leukocyte abnormalities, spleen function insufficiency or thymic abnormalities), digestive diseases (e.g., irritable bowel syndrome, ulcerous colitis, Crohn's disease, ischemic colitis, gastritis, digestive ulcer, rectitis, reflux esophagitis, duodenitis etc.), respiratory diseases (e.g., chronic obstructive pulmonary disease, asthma etc.), circulatory diseases (e.g., cardiac insufficiency, arrhythmia, long QT syndrome, arteriosclerosis, angina etc.), hepatic diseases (e.g., hepatocirrhosis etc.), renal diseases (e.g., renal insufficiency, uremia etc.), muscular diseases (e.g., muscular dystrophy etc.), pancreatic diseases (e.g., pancreatic function insufficiency such as pancreatitis, pancreatic cystic fibrosis etc.), genital diseases (e.g., prostatic hypertrophy, prostatitis, testis neurosis, ovarian cystoma etc.), burns, pain syndrome (e.g., cancerous sharp pain, referred pain etc.), cancers (e.g., testis tumor, ovarian cancer, breast cancer, esophagus cancer, lung cancer, kidney cancer, hepatoma, non-small cell lung cancer, prostate cancer, stomach cancer, bladder cancer, uterine cervix cancer, colon cancer, rectum cancer, pancreatic cancer, thymoma, myoma etc.) etc., preferably inflammatory diseases, rheumatoid diseases, diabetic neurosis etc.
According to known methods (for example, Nature, vol. 411, p. 494, 2001), the double-stranded RNA can be produced by designing it on the basis of the sequence of the polynucleotide of the present invention.
According to known methods (for example, TRENDS in Molecular Medicine, vol. 7, p. 221, 2001), the ribozyme can be produced by designing it on the basis of the sequence of the polynucleotide of the present invention. For example, the ribozyme can be produced by partially replacing a known ribozyme sequence by a part of RNA encoding the protein of the present invention. The part of RNA encoding the protein of the present invention includes a sequence adjacent to a consensus sequence NUX (N represents any base, and X represents a base other than G) which can be cleaved with a known ribozyme.
When the double-stranded RNA or the ribozyme is to be used as the aforesaid prophylactic/therapeutic agent, it can be formed into a medicine and administered in the same manner as for the antisense polynucleotide. The expression vector in (v) above is used as the aforesaid prophylactic/therapeutic agent in the same manner as in known gene therapy methods.
[6] Creation of an Animal Having the DNA of the Present InventionThe present invention provides a non-human mammal having the DNA encoding the protein of the present invention, which is exogenous (hereinafter simply referred to as the exogenous DNA of the present invention) or its mutant DNA (sometimes simply referred to as the exogenous mutant DNA of the present invention).
Thus, the present invention provides:
(1) a non-human mammal having the exogenous DNA of the present invention or its mutant DNA;
(2) the mammal according to (1), wherein the non-human mammal is a rodent;
(3) the mammal according to (2), wherein the rodent is mouse or rat; and
(4) a recombinant vector comprising the exogenous DNA of the present invention or its mutant DNA and capable of expression in a mammal.
The non-human mammal having the exogenous DNA of the present invention or its mutant DNA (hereinafter simply referred to as the DNA transgenic animal of the present invention) can be created by transfecting a desired DNA into an unfertilized egg, a fertilized egg, a spermatozoon, a germinal cell containing a primordial germinal cell thereof, or the like, preferably in the embryogenic stage in the development of a non-human mammal (more preferably in the single cell or fertilized cell stage and generally before the 8-cell phase) by standard means such as the calcium phosphate method, the electric pulse method, the lipofection method, the agglutination method, the microinjection method, the particle gun method, the DEAE-dextran method, etc. Also, it is possible to transfect the exogenous DNA of the present invention into a somatic cell, a living organ, a tissue cell or the like, by the DNA transfection methods, and utilize the transformant for cell culture, tissue culture, etc. In addition, these cells may be fused with the above-described germinal cell by a publicly known cell fusion method to create the transgenic animal of the present invention.
Examples of the non-human mammal that can be used include bovine, swine, sheep, goat, rabbits, dogs, cats, guinea pigs, hamsters, mice, rats and the like. Above all, preferred are rodents, especially mice (e.g., C57BL/6 strain, DBA2 strain, etc. for a pure line and for a cross line, B6C3F1 strain, BDF1 strain, B6D2F1 strain, BALB/c strain, ICR strain, etc.) or rats (Wistar, SD, etc.) and the like, since they are relatively short in ontogeny and life cycle from a standpoint of creating model disease animals, and are easy in breeding.
“Mammals” in a recombinant vector that can be expressed in mammals include human etc. in addition to the aforesaid non-human mammals.
The exogenous DNA of the present invention refers to the DNA of the present invention that is once isolated and extracted from mammals, not the DNA of the present invention inherently possessed by the non-human mammals.
The mutant DNA of the present invention includes mutants resulting from variation (e.g., mutation, etc.) in the base sequence of the original DNA of the present invention, specifically DNAs resulting from base addition, deletion, substitution with other bases, etc. and further including abnormal DNA.
The abnormal DNA is intended to mean the DNA that expresses the abnormal protein of the present invention and exemplified by such a DNA that expresses a protein suppressing the functions of the normal protein of the present invention, or the like.
The exogenous DNA of the present invention may be any one of those derived from a mammal of the same species as, or a different species from, the mammal as the target animal. In transfecting the DNA of the present invention to the target animal, it is generally advantageous to use the DNA as a DNA construct in which the DNA is ligated downstream a promoter capable of expressing the DNA in the target animal. For example, in the case of transfecting the human DNA of the present invention, a DNA transgenic mammal that expresses the DNA of the present invention to a high level can be prepared by microinjecting a DNA construct (e.g., vector, etc.) ligated with the human DNA of the present invention into a fertilized egg of the target mammal, e.g., a fertilized egg of mouse, downstream the various promoters capable of expressing the DNA derived from various mammals (e.g., rabbits, dogs, cats, guinea pigs, hamsters, rats, mice, etc.) having the DNA of the present invention highly homologous to the human DNA.
As expression vectors for the protein of the present invention, there are Escherichia coli-derived plasmids, Bacillus subtilis-derived plasmids, yeast-derived plasmids, bacteriophages such as λ phage, etc., retroviruses such as Moloney leukemia virus, etc., animal viruses such as vaccinia virus, baculovirus, etc. Of these vectors, Escherichia coli-derived plasmids, Bacillus subtilis-derived plasmids, yeast-derived plasmids, etc. are preferably used.
Examples of these promoters for regulating the DNA expression include (i) promoters for DNA derived from viruses (e.g., simian virus, cytomegalovirus, Moloney leukemia virus, JC virus, breast cancer virus, poliovirus, etc.), and (ii) promoters derived from various mammals (human, rabbits, dogs, cats, guinea pigs, hamsters, rats, mice, etc.), for example, promoters of albumin, insulin II, uroplakin II, elastase, erythropoietin, endothelin, muscular creatine kinase, glial fibrillary acidic protein glutathione S-transferase, platelet-derived growth factor β, keratins K1, K10 and K14, collagen types I and II, cyclic AMP-dependent protein kinase βI subunit, dystrophin, tartarate-resistant alkaline phosphatase, atrial natriuretic factor, endothelial receptor tyrosine kinase (generally abbreviated as Tie2), sodium-potassium adenosine triphosphorylase (Na, K-ATPase), neurofilament light chain, metallothioneins I and IIA, metalloproteinase 1 tissue inhibitor, MHC class I antigen (H-2L), H-ras, renin, dopamine β-hydroxylase, thyroid peroxidase (TPO), polypeptide chain elongation factor 1α(EF-1α), β actin, α and β myosin heavy chains, myosin light chains 1 and 2, myelin base protein, thyroglobulins, Thy-1, immunoglobulins, H-chain variable region (VNP), serum amyloid component P, myoglobin, troponin C, smooth muscle α actin, preproencephalin A, vasopressin, etc. Among them, cytomegalovirus promoters, human peptide elongation factor 1α (EF-1α) promoters, human and chicken β actin promoters etc., which can achieve high expression in the whole body, are preferred.
It is preferred that the vectors described above have a sequence for terminating the transcription of the desired messenger RNA in the DNA transgenic animal (generally called a terminator); for example, a sequence of each DNA derived from viruses and various mammals. SV40 terminator of the simian virus, etc. are preferably used.
In addition, for the purpose of increasing the expression of the desired exogenous DNA to a higher level, the splicing signal and enhancer region of each DNA, a portion of the intron of an eukaryotic DNA may also be ligated at the 5, upstream of the promoter region, or between the promoter region and the translational region, or at the 3′ downstream of the translational region, depending upon purposes.
The normal translational region of the protein of the present invention can be prepared as the whole or a part of genomic DNA from DNA derived from liver, kidney, thyroid cells, fibroblasts etc. derived from humans or mammals (for example, rabbit, dog, cat, guinea pig, hamster, rat, mouse etc.) and a wide variety of commercial DNA libraries, or from complementary DNA as a starting material prepared by a known method from RNA derived from liver, kidney, thyroid cells, fibroblasts etc. As the extraneous abnormal DNA, a translational region can be prepared by point mutation of the normal translational region of the polypeptide obtained from the above cells or tissues.
The translational region can be prepared, as a DNA construct capable of being expressed in the transgenic animal, by a conventional DNA engineering technique, in which the DNA is ligated downstream the aforesaid promoter and if desired, upstream the translation termination site.
The exogenous DNA of the present invention is transfected at the fertilized egg cell stage in a manner such that the DNA is certainly present in all the germinal cells and somatic cells of the target mammal. The fact that the exogenous DNA of the present invention is present in the germinal cells of the animal prepared by DNA transfection means that all offspring of the prepared animal will maintain the exogenous DNA of the present invention in all of the germinal cells and somatic cells thereof. The offspring of the animal that inherits the exogenous DNA of the present invention also have the exogenous DNA of the present invention in all of the germinal cells and somatic cells thereof.
The non-human mammal, in which the normal exogenous DNA of the present invention has been transfected can be passaged as the DNA-bearing animal under ordinary rearing environment, by confirming that the exogenous DNA is stably retained by mating.
By the transfection of the exogenous DNA of the present invention at the fertilized egg cell stage, the DNA is retained to be excess in all of the germinal and somatic cells of the target mammal. The fact that the exogenous DNA of the present invention is excessively present in the germinal cells of the prepared animal after transfection means that all of the offspring of the animal prepared have the exogenous DNA of the present invention excessively in all of the germinal cells and somatic cells thereof. The offspring of the animal of this kind that inherits the exogenous DNA of the present invention excessively have the DNA of the present invention in all of the germinal cells and somatic cells thereof.
By obtaining a homozygotic animal having the transfected DNA in both of homologous chromosomes and mating a male and female of the animal, all offspring can be passaged to excessively retain the DNA.
In a non-human mammal bearing the normal DNA of the present invention, the normal DNA of the present invention is expressed to a high level, and may eventually develop the hyperfunction of the protein of the present invention by promoting the functions of endogenous normal DNA. Therefore, the animal can be utilized as a pathologic model animal for such a disease. Specifically, using the normal DNA transgenic animal of the present invention, it becomes possible to elucidate the hyperfunction of the protein of the present invention and to clarify the pathological mechanism of the disease associated with the protein of the present invention and to determine how to treat these diseases.
Furthermore, since a mammal transfected with the exogenous normal DNA of the present invention exhibits an increasing symptom of the librated protein of the present invention, the animal is usable for screening of therapeutic agents agent for the disease associated with the protein of the present invention.
On the other hand, non-human mammal having the exogenous abnormal DNA of the present invention can be passaged under normal breeding conditions as the DNA-bearing animal by confirming the stable retaining of the exogenous DNA via crossing. In addition, the objective exogenous DNA can be utilized as a starting material by inserting the objective exogenous DNA into the plasmid described above. The DNA construct with a promoter can be prepared using conventional DNA engineering techniques. The transfection of the abnormal DNA of the present invention at the fertilized egg cell stage is preserved to be present in all of the germinal and somatic cells of the mammals to be targeted. The fact that the abnormal DNA of the present invention is present in the germinal cells of the animal after DNA transfection means that all of the offspring of the prepared animal have the abnormal DNA of the present invention in all of the germinal and somatic cells. The offspring of such an animal that inherits the exogenous DNA of the present invention has the abnormal DNA of the present invention in all the germinal and somatic cells. A homozygous animal having the introduced DNA on both of homologous chromosomes can be acquired and then by mating these male and female animals, all the offspring can be bred to have the DNA.
Since the non-human mammal having the abnormal DNA of the present invention expresses the abnormal DNA of the present invention at a high level, the animal may cause the function inactive type inadaptability of the protein of the present invention by inhibiting the functions of the endogenous normal DNA, and can be utilized as its disease model animal. For example, using the abnormal DNA-transferred animal of the present invention, it is possible to elucidate the mechanism of the function inactive type inadaptability of the protein of the present invention and to study a method for treatment of this disease.
In its specific applicability, the transgenic animal of the present invention expressing the abnormal DNA of the present invention to a high level is also expected to serve as a model for the elucidation of the mechanism of the functional inhibition (dominant negative effect) of a normal protein by the abnormal protein of the present invention in the function inactive type inadaptability of the protein of the present invention.
A mammal bearing the abnormal exogenous DNA of the present invention is also expected to serve for screening a candidate drug for the treatment of the function inactive type inadaptability of the protein of the present invention, since the protein of the present invention is increased in such an animal in its free form.
Other potential applicability of the two kinds of the transgenic animals described above includes:
(i) use as a cell source for tissue culture;
(ii) elucidation of the association with a peptide that is specifically expressed or activated by the protein of the present invention, through direct analysis of DNA or RNA in tissue of the DNA transgenic animal of the present invention or by analysis of the peptide tissue expressed by the DNA;
(iii) research in the function of cells derived from tissues that are cultured usually only with difficulty, using cells of tissue bearing the DNA cultured by a standard tissue culture technique;
(iv) screening for a drug that enhances the functions of cells using the cells described in (iii) above; and,
(v) isolation and purification of the variant protein of the present invention and preparation of an antibody thereto.
Furthermore, clinical conditions of a disease associated with the protein of the present invention, including the function inactive type inadaptability of the protein of the present invention can be determined using the DNA transgenic animal of the present invention. Also, pathological findings on each organ in a disease model associated with the protein of the present invention can be obtained in more detail, leading to the development of a new method for treatment as well as the research and therapy of any secondary diseases associated with the disease.
It is also possible to obtain a free DNA-transfected cell by withdrawing each organ from the DNA transgenic animal of the present invention, mincing the organ and degrading with a proteinase such as trypsin, etc., followed by establishing the line of culturing or cultured cells. Furthermore, the DNA transgenic animal of the present invention can serve as identification of cells capable of producing the protein of the present invention, and as studies on association with apoptosis, differentiation or propagation or on the mechanism of signal transduction in these properties to inspect any abnormality therein. Thus, the DNA transgenic animal of the present invention can provide an effective research material for the protein of the present invention and for elucidating the function and effect thereof.
To develop pharmaceuticals for the treatment of diseases associated with the protein of the present invention, including the function inactive type inadaptability of the protein of the present invention, using the DNA transgenic animal of the present invention, an effective and rapid method for screening the pharmaceuticals for the treatment of diseases can be provided by using the method for inspection and the method for quantification, etc. described above. It is also possible to investigate and develop a method for DNA therapy for the treatment of diseases associated with the protein of the present invention, using the DNA transgenic animal of the present invention or a vector capable of expressing the exogenous DNA of the present invention.
[7] Knockout AnimalThe present invention provides a non-human mammal embryonic stem cell bearing the DNA of the present invention inactivated and a non-human mammal deficient in expressing the DNA of the present invention.
Thus, the present invention provides:
(1) a non-human mammal embryonic stem cell in which the DNA of the present invention is inactivated;
(2) the embryonic stem cell according to (1), wherein the DNA is inactivated by introducing a reporter gene (e.g., β-galactosidase gene derived from Escherichia coli);
(3) the embryonic stem cell according to (1), which is resistant to neomycin;
(4) the embryonic stem cell according to (1), wherein the non-human mammal is a rodent;
(5) an embryonic stem cell according to (4), wherein the rodent is mouse;
(6) a non-human mammal deficient in expressing the DNA of the present invention, wherein the DNA of the present invention is inactivated;
(7) the non-human mammal according to (6), wherein the DNA is inactivated by inserting a reporter gene (e.g., β-galactosidase derived from Escherichia coli) therein and the reporter gene is capable of being expressed under the control of a promoter for the DNA of the present invention;
(8) the non-human mammal according to (6), which is a rodent;
(9) the non-human mammal according to (8), wherein the rodent is mouse; and
(10) a method for screening a compound or its salt that promotes or inhibits the promoter activity for the DNA of the present invention, which comprises administering a test compound to the animal of (7) and detecting expression of the reporter gene.
The non-human mammalian embryonic stem cell, in which the DNA of the present invention is inactivated, refers to a non-human mammalian embryonic stem cell that suppresses the ability of the non-human mammalian to express the DNA by artificially mutating the DNA of the present invention possessed in the non-human mammal, or the DNA has no substantial ability to express the protein of the present invention (hereinafter sometimes referred to as the knockout DNA of the present invention) by substantially inactivating the activities of the protein of the present invention encoded by the DNA (hereinafter merely referred to as ES cell).
As the non-human mammalian, the same examples as described above apply.
Techniques for artificially mutating the DNA of the present invention include deletion of a part or all of the DNA sequence and insertion of, or substitution with, other DNA, e.g., by genetic engineering. By these variations, the knockout DNA of the present invention may be prepared, for example, by shifting the reading frame of a codon or by disrupting the function of a promoter or exon.
Specifically, the non-human mammalian embryonic stem cell, in which the DNA of the present invention is inactivated (hereinafter merely referred to as the ES cell with the DNA of the present invention inactivated or the knockout ES cell of the present invention), can be obtained by, for example, isolating the DNA of the present invention possessed by the target non-human mammal, inserting a DNA strand (hereinafter simply referred to as targeting vector) having a DNA sequence constructed so as to eventually destroy the gene by inserting into its exon site a chemical resistant gene such as a neomycin resistant gene or a hygromycin resistant gene, or a reporter gene such as lacZ (β-galactosidase gene) or cat (chloramphenicol acetyltransferase gene), etc. thereby destroying the functions of exon, or by inserting into the intron site between exons a DNA sequence which terminates gene transcription (e.g., polyA-added signal, etc.) thereby disabling the synthesis of complete messenger RNA, into a chromosome of the animal cells by, e.g., homologous recombination. The thus obtained ES cells are analyzed by the Southern hybridization using as a probe a DNA sequence on or near the DNA of the present invention, or by PCR using as primers a DNA sequence on the targeting vector and another DNA sequence near the DNA of the present invention which is not included in the targeting vector, and the knockout ES cell of the present invention is selected.
The parent ES cells to inactivate the DNA of the present invention by homologous recombination, etc. may be of a strain already established as described above, or may be originally established in accordance with a modification of the known method by Evans and Kaufman supra. For example, in the case of mouse ES cells, currently it is common practice to use ES cells of the 129 strain. However, since their immunological background is obscure, the C57BL/6 mouse or the BDF1 mouse (F1 hybrid between C57BL/6 and DBA/2), wherein the low ovum collection per C57BL/6 mouse or C57BL/6 has been improved by crossing with DBA/2, may be preferably used, instead of obtaining a pure line of ES cells with the clear immunological genetic background. The BDF1 mouse is advantageous in that when a pathologic model mouse is generated using ES cells obtained therefrom, the genetic background can be changed to that of the C57BL/6 mouse by back-crossing with the C57BL/6 mouse, since its background is of the C57BL/6 mouse, as well as being advantageous in that ovum availability per animal is high and ova are robust.
In establishing ES cells, blastocytes of 3.5 days after fertilization are commonly used. A large number of early stage embryos may be acquired more efficiently, by collecting the embryos of the 8-cell stage and using the same after culturing until the blastocyte stage.
Although the ES cells used may be of either sex, male ES cells are generally more convenient for generation of a germ cell line chimera and are therefore preferred. It is desirable to identify sexes as soon as possible also in order to save painstaking culture time.
As an example of the method for sex identification of the ES cell, mention may be made of a method in which a gene in the sex-determining region on the Y-chromosome is amplified by PCR and detected. When this method is used, ES cells (about 50 cells) corresponding to almost 1 colony are sufficient, whereas karyotype analysis hitherto required about 106 cells; therefore, the first selection of ES cells at the early stage of culture can be based on sex identification, and male cells can be selected early, which saves a significant amount of time at the early stage of culture.
Second selection can be achieved by, for example, number of chromosome confirmation by the G-banding method. It is usually desirable that the chromosome number of the obtained ES cells be 100% of the normal number. However, when it is difficult to obtain the cells having the normal number of chromosomes due to physical operation etc. in cell establishment, it is desirable that the ES cell be again cloned to a normal cell (e.g., in mouse cells having the number of chromosomes being 2n=40) after the gene of the ES cells is rendered knockout.
Although the embryonic stem cell line thus obtained shows a very high growth potential, it must be subcultured with great care, since it tends to lose its ontogenic capability. For example, the embryonic stem cell line is cultured at about 37° C. in a carbon dioxide incubator (preferably about 5% carbon dioxide and about 95% air, or about 5% oxygen, about 5% carbon dioxide and about 90% air) in the presence of LIF (1-10000 U/ml) on appropriate feeder cells such as STO fibroblasts, treated with a trypsin/EDTA solution (normally about 0.001 to about 0.5% trypsin/about 0.1 to 5 mM EDTA, preferably about 0.1% trypsin/about 1 mM EDTA) at the time of passage to obtain separate single cells, which are then seeded on freshly prepared feeder cells. This passage is normally conducted every 1 to 3 days; it is desirable that cells be observed at passage and cells found to be morphologically abnormal in culture, if any, be abandoned.
By allowing ES cells to reach a high density in mono-layers or to form cell aggregates in suspension under appropriate conditions, it is possible to differentiate them to various cell types, for example, parietal and visceral muscles, cardiac muscle or the like [M. J. Evans and M. H. Kaufman, Nature, 292, 154, 1981; G. R. Martin, Proc. Natl. Acad. Sci. U.S.A., 78, 7634, 1981; T. C. Doetschman et al., Journal of Embryology Experimental Morphology, 87, 27, 1985]. The cells deficient in expression of the DNA of the present invention, which are obtainable from the differentiated ES cells of the present invention, are useful for studying the functions of the protein of the present invention or the protein of the present invention in vitro cytologically or molecular biologically.
The non-human mammal deficient in expression of the DNA of the present invention can be identified from a normal animal by measuring the amount of mRNA in the subject animal by a publicly known method, and indirectly comparing the levels of expression.
As the non-human mammal, the same examples supra apply.
With respect to the non-human mammal deficient in expression of the DNA of the present invention, the DNA of the present invention can be made knockout by transfecting a targeting vector, prepared as described above, to mouse embryonic stem cells or mouse oocytes thereof, and conducting homologous recombination in which a targeting vector DNA sequence, wherein the DNA of the present invention is inactivated by the transfection, is replaced with the DNA of the present invention on a chromosome of a mouse embryonic stem cell or mouse oocyte.
The cells with the DNA of the present invention in which the DNA of the present invention is rendered knockout can be identified by the Southern hybridization analysis using as a probe a DNA sequence on or near the DNA of the present invention, or by PCR analysis using as primers a DNA sequence on the targeting vector and another DNA sequence which is not included in the DNA of the present invention derived from mouse, which is used as the targeting vector. When non-human mammalian embryonic stem cells are used, the cell line wherein the DNA of the present invention is inactivated is cloned by homologous recombination; the resulting cloned cell line is injected to, e.g., a non-human mammalian embryo or blastocyte, at an appropriate stage such as the 8-cell stage. The resulting chimeric embryos are transplanted to the uterus of the pseudo-pregnant non-human mammal. The resulting animal is a chimeric animal composed of both cells having the normal locus of the DNA of the present invention and those having an artificially mutated locus of the DNA of the present invention.
When some germ cells of the chimeric animal have a mutated locus of the DNA of the present invention, an individual, in which all tissues are composed of cells having an artificially mutated locus of the DNA of the present invention, can be selected from a series of offspring obtained by crossing between such a chimeric animal and a normal animal, e.g., by coat color identification, etc. The individuals thus obtained are normally deficient in heterozygous expression of the protein of the present invention. The individuals deficient in homozygous expression of the protein of the present invention can be obtained from offspring of the intercross between the heterozygotes.
When an oocyte is used, a DNA solution may be injected, e.g., to the prenucleus by microinjection thereby obtaining a transgenic non-human mammal having a targeting vector introduced into its chromosome. From such transgenic non-human mammals, those having a mutation at the locus of the DNA of the present invention can be obtained by selection based on homologous recombination.
As described above, individuals wherein the DNA of the present invention is rendered knockout permit passage rearing under ordinary rearing conditions, after it is confirmed that in the animal individuals obtained by their crossing, the DNA has been knockout.
Furthermore, the genital system may be obtained and maintained by conventional methods. That is, by crossing male and female animals each having the inactivated DNA, homozygote animals having the inactivated DNA in both loci can be obtained. The homozygotes thus obtained may be reared so that one normal animal and two or more homozygotes are produced from a mother animal to efficiently obtain such homozygotes. By crossing male and female heterozygotes, homozygotes and heterozygotes having the inactivated DNA are proliferated and passaged.
The non-human mammalian embryonic stem cell, in which the DNA of the present invention is inactivated, is very useful for preparing a non-human mammal deficient in expression of the DNA of the present invention.
Since the non-human mammal, in which the DNA of the present invention fails to express, lacks various biological activities induced by the protein of the present invention, such an animal can be a disease model suspected of inactivated biological activities of the protein of the present invention and thus, offers an effective study to investigate causes for and therapy for these diseases.
[7a] Method for Screening of Compounds Having Therapeutic/Prophylactic Effects for Diseases Caused by Deficiency, Damages, etc. of the DNA of the Present InventionThe non-human mammal deficient in expression of the DNA of the present invention can be used to screen compounds having therapeutic/prophylactic effects for diseases caused by deficiency, damages, etc. of the DNA of the present invention.
That is, the present invention provides a method for screening of a compound or its salt having therapeutic/prophylactic effects for diseases caused by deficiency, damages, etc. of the DNA of the present invention, which comprises administering a test compound to the non-human mammal deficient in expression of the DNA of the present invention, and observing and measuring a change having occurred in the animal.
As the non-human mammal deficient in expression of the DNA of the present invention used for the screening method, the same examples as given hereinabove apply.
Examples of the test compounds include peptides, proteins, non-peptide compounds, synthetic compounds, fermentation products, cell extracts, plant extracts, animal tissue extracts, blood plasma, etc. and these compounds may be novel compounds or publicly known compounds.
Specifically, the non-human mammal deficient in the expression of the DNA of the present invention is treated with a test compound, comparison is made with an intact animal for control and a change in each organ, tissue, disease conditions, etc. of the animal is used as an indicator to assess the therapeutic/prophylactic effects of the test compound.
For treating an animal to be tested with a test compound, for example, oral administration, intravenous injection, etc. are applied and the treatment is appropriately selected depending upon conditions of the test animal, properties of the test compound, etc. Furthermore, the amount of a test compound administered can be appropriately selected depending on administration route, nature of the test compound, or the like.
For example, when a compound having a therapeutic effect on hyperlipemia is screened, a test compound is administered into a non-human mammalian animal deficient in expressing DNA encoding the protein A of the present invention, raised with common feed or cholesterol-containing common feed, and then the amount of total bile acid in feces or total serum cholesterol in the animal is measured with time.
For example, when a compound having a prophylactic/therapeutic effect on renal insufficiency is screened, a test compound is administered into a non-human mammalian animal deficient in expressing DNA encoding the protein B of the present invention, and then the amount of blood creatine or urine protein in the animal is measured with time.
For example, when a compound having a therapeutic effect on diabetics is screened, a non-human mammalian animal deficient in expressing DNA encoding the protein C of the present invention is subjected to a sugar loading treatment, a test compound is administered before or after the sugar loading treatment, and blood sugar level, body weight change, etc. of the animal are measured with time.
For example, when a compound having a prophylactic/therapeutic effect on chronic articular rheumatism is screened, a test compound is administered into a non-human mammalian animal deficient in expressing DNA encoding the protein D of the present invention, and then the volume of a swelling in a joint in the animal is measured with time, or the damage in the joint is evaluated by X-ray, MRI. histological techniques etc.
The compound obtained by the above screening is a compound selected from the test compounds described above, and has therapeutic/prophylactic effects on diseases caused by deficiency, damages, etc. of the protein of the present invention, and can thus be used as a safe and low toxic drug for the treatment/prevention, etc. for these diseases. A compound derived from the compound obtained by the screening can also be similarly used.
The compound obtained by the screening method may form a salt, and as the salts of the compound, there may be used salts with physiologically acceptable acids (e.g., inorganic acids or organic acids) or bases (e.g., alkali metals), preferably physiologically acceptable acid addition salts. Examples of such salts are salts with inorganic acids (e.g., hydrochloric acid, phosphoric acid, hydrobromic acid, sulfuric acid), salts with organic acids (e.g., acetic acid, formic acid, propionic acid, fumaric acid, maleic acid, succinic acid, tartaric acid, citric acid, malic acid, oxalic acid, benzoic acid, methanesulfonic acid, benzenesulfonic acid) and the like.
A medicine comprising the compound or salts thereof obtained by the above screening method may be manufactured in a manner similar to the method for preparing the medicine comprising the protein of the present invention described hereinabove.
Since the medicine thus obtained is safe and low toxic, it can be administered to humans or other mammals (e.g., rat, mouse, guinea pig, rabbit, sheep, swine, bovine, horse, cat, dog, monkey, etc.).
The dose of the above compound or its salt may vary depending on its action, target disease, subject to be administered, route for administration, etc. When the compound is orally administered, the compound is administered to adult (as 60 kg) as a patient with hyperlipemia generally in a daily dose of approximately 0.1 mg to 100 mg, preferably approximately 1.0 mg to 50 mg, more preferably approximately 1.0 to 20 mg. When the compound is parenterally administered, a single dose of the compound may vary depending on subject to be administered, target disease, etc. When the compound is administered in the form of an injection to adult (as 60 kg body weight) as a patient with hyperlipemia, it is convenient to administer the compound by intravenous injection generally in a daily dose of approximately 0.01 to 30 mg, preferably approximately 0.1 to 20 mg, more preferably approximately 0.1 to 10 mg. For other animal species, the corresponding dose as converted per 60 kg weight can be administered.
[7b] Method of Screening a Compound that Promotes or Inhibits the Activities of a Promoter for the DNA of the Present Invention
The present invention provides a method of screening a compound or its salt that promotes or inhibits the activities of a promoter for the DNA of the present invention, which comprises administering a test compound to a non-human mammal deficient in expression of the DNA of the present invention and detecting expression of the reporter gene.
In the screening method described above, the non-human mammal deficient in expression of the DNA of the present invention is selected from the aforesaid non-human mammal deficient in expression of the DNA of the present invention for an animal, in which the DNA of the present invention is inactivated by introducing a reporter gene and the reporter gene can be expressed under the control of a promoter for the DNA of the present invention.
The same examples given above for the test compound apply to the test compound.
As the reporter gene, the same specific examples given above apply to the reporter gene, with β-galactosidase (lacZ), soluble alkaline phosphatase gene, luciferase gene, etc. being preferred.
In the non-human mammal deficient in expression of the DNA of the present invention wherein the DNA of the present invention is substituted with a reporter gene, the reporter gene is present under the control of a promoter for the DNA of the present invention. Thus, the activity of the promoter can be detected by tracing the expression of a substance encoded by the reporter gene.
For example, when a part of the DNA region encoding the protein of the present invention is substituted with, e.g., β-galactosidase gene (lacZ) derived from Escherichia coli, β-galactosidase is expressed in a tissue where the protein of the present invention should originally be expressed, in place of the protein of the present invention. Thus, the expression state of the protein of the present invention can be readily observed in vivo in an animal, by staining with a reagent, e.g., 5-bromo-4-chloro-3-indolyl-β-galactopyranoside (X-gal), which is a substrate for β-galactosidase. Specifically, a mouse deficient in the protein of the present invention, or its tissue section, is fixed with glutaraldehyde, etc. After washing with phosphate buffered saline (PBS), the system is reacted with a staining solution containing X-gal at room temperature or about 37° C. for approximately 30 minutes to 1 hour. After the β-galactosidase reaction is terminated by washing the tissue preparation with 1 mM EDTA/PBS solution, the color formed is observed. Alternatively, mRNA encoding lacZ may be detected in a conventional manner.
The compound or salts thereof obtained using the screening methods supra are compounds selected from the test compounds described above, which promote or inhibit the promoter activity for the DNA of the present invention.
The compound obtained by the screening methods may be in the form of salts. The salts of the compound used are salts with physiologically acceptable acids (e.g., inorganic acids) or bases (e.g., organic acids), and physiologically acceptable acid addition salts are preferred. Examples of such salts are salts with inorganic acids (e.g., hydrochloric acid, phosphoric acid, hydrobromic acid, sulfuric acid), salts with organic acids (e.g., acetic acid, formic acid, propionic acid, fumaric acid, maleic acid, succinic acid, tartaric acid, citric acid, malic acid, oxalic acid, benzoic acid, methanesulfonic acid, benzenesulfonic acid) and the like.
The compound or its salt that promotes the activity of the promoter for the DNA encoding the protein A of the present invention can promote the expression of protein A of the present invention to promote the functions of the protein, and is thus useful as a medicine such as a prophylactic/therapeutic agent for diseases such as hyperlipemia, genital diseases (e.g., prostatic hypertrophy, prostatitis, testis neurosis, ovarian cystoma etc.), digestive diseases (e.g., irritable bowel syndrome, ulcerous colitis, Crohn's disease, ischemic colitis, gastritis, digestive ulcer, rectitis, reflux esophagitis, duodenitis etc.), respiratory diseases (e.g., chronic obstructive pulmonary disease, bronchial asthma etc.), autoimmune diseases (e.g., myasthenia gravis, glomerulonephritis, multiple sclerosis, Sjogren's syndrome, systemic lupus erythematosus etc.), allergic diseases (e.g., pollinosis, allergic rhinitis, anaphylactic shock, atopic dermatitis etc.), rheumatoid diseases (e.g., chronic articular rheumatism, osteoarthritis, gout etc.), thymic diseases, immune disorders (e.g., immune disorders accompanying leukocyte abnormalities, spleen function insufficiency or thymic abnormalities), diabetes, hypothyroidism, circulatory diseases (e.g., cardiac insufficiency, arrhythmia, long QT syndrome, arteriosclerosis, angina etc.), pancreatic diseases (e.g., pancreatic function insufficiency such as pancreatitis, pancreatic cystic fibrosis etc.), cancers (e.g., testis tumor, ovarian cancer, breast cancer, esophagus cancer, lung cancer, kidney cancer, hepatoma, non-small cell lung cancer, prostate cancer, stomach cancer, bladder cancer, uterine cervix cancer, colon cancer, rectum cancer, pancreatic cancer, thymoma, myoma etc.) etc., preferably hyperlipemia, arteriosclerosis, genital diseases, digestive diseases etc.
The compound or its salt that inhibits the promoter activity for the DNA encoding the protein A of the present invention can inhibit the expression of the protein A of the present invention to inhibit the functions of the protein, and is thus useful as a medicine such as a prophylactic/therapeutic agent for diseases such as hyperlipemia, genital diseases (e.g., prostatic hypertrophy, prostatitis, testis neurosis, ovarian cystoma etc.), digestive diseases (e.g., irritable bowel syndrome, ulcerous colitis, Crohn's disease, ischemic colitis, gastritis, digestive ulcer, rectitis, reflux esophagitis, duodenitis etc.), respiratory diseases (e.g., chronic obstructive pulmonary disease, bronchial asthma etc.), autoimmune diseases (e.g., myasthenia gravis, glomerulonephritis, multiple sclerosis, Sjogren's syndrome, systemic lupus erythematosus etc.), allergic diseases (e.g., pollinosis, allergic rhinitis, anaphylactic shock, atopic dermatitis etc.), rheumatoid diseases (e.g., chronic articular rheumatism, osteoarthritis, gout etc.), thymic diseases, immune disorders (e.g., immune disorders accompanying leukocyte abnormalities, spleen function insufficiency or thymic abnormalities), diabetes, hypothyroidism, circulatory diseases (e.g., cardiac insufficiency, arrhythmia, long QT syndrome, arteriosclerosis, angina etc.), pancreatic diseases (e.g., pancreatic function insufficiency such as pancreatitis, pancreatic cystic fibrosis etc.), cancers (e.g., testis tumor, ovarian cancer, breast cancer, esophagus cancer, lung cancer, kidney cancer, hepatoma, non-small cell lung cancer, prostate cancer, stomach cancer, bladder cancer, uterine cervix cancer, colon cancer, rectum cancer, pancreatic cancer, thymoma, myoma etc.) etc., preferably hyperlipemia, arteriosclerosis, genital diseases, digestive diseases etc.
The compound or its salt that promotes the promoter activity for the DNA encoding the protein B of the present invention can promote the expression of the protein B of the present invention to promote the functions of the protein, and is thus useful as a medicine such as a prophylactic/therapeutic agent for diseases such as renal diseases (e.g., renal insufficiency, uremia etc.), digestive diseases (e.g., irritable bowel syndrome, ulcerous colitis, Crohn's disease, ischemic colitis, gastritis, digestive ulcer, rectitis, reflux esophagitis, duodenitis etc.), respiratory diseases (e.g., chronic obstructive pulmonary disease, asthma etc.), pancreatic diseases (e.g., pancreatic function insufficiency such as pancreatitis, pancreatic cystic fibrosis etc.), autoimmune diseases (e.g., myasthenia gravis, glomerulonephritis, multiple sclerosis, Sjogren's syndrome, systemic lupus erythematosus etc.), allergic diseases (e.g., pollinosis, allergic rhinitis, anaphylactic shock, atopic dermatitis etc.), rheumatoid diseases (e.g., chronic articular rheumatism, osteoarthritis, gout etc.), thymic diseases, immune disorders (e.g., immune disorders accompanying leukocyte abnormalities, spleen function insufficiency or thymic abnormalities), genital diseases (e.g., prostatic hypertrophy, prostatitis, testis neurosis, ovarian cystoma etc.), spleen diseases, cancers (e.g., testis tumor, ovarian cancer, breast cancer, esophagus cancer, lung cancer, kidney cancer, hepatoma, non-small cell lung cancer, prostate cancer, stomach cancer, bladder cancer, uterine cervix cancer, colon cancer, rectum cancer, pancreatic cancer, thymoma, myoma etc.), diabetes, hypertension, ischemia-reperfusion injury, central nerve diseases (e.g., Alzheimer's disease, Parkinson's syndrome, schizophrenia, cerebral vascular dementia, cerebral ischemia, epilepsy etc.) etc., preferably respiratory diseases, renal diseases, digestive diseases etc.
The compound or its salt that inhibits the promoter activity for the DNA encoding the protein B of the present invention can inhibit the expression of the protein B of the present invention to inhibit the functions of the protein, and is thus useful as a medicine such as a prophylactic/therapeutic agent for diseases such as renal diseases (e.g., renal insufficiency, uremia etc.), digestive diseases (e.g., irritable bowel syndrome, ulcerous colitis, Crohn's disease, ischemic colitis, gastritis, digestive ulcer, rectitis, reflux esophagitis, duodenitis etc.), respiratory diseases (e.g., chronic obstructive pulmonary disease, asthma etc.), pancreatic diseases (e.g., pancreatic function insufficiency such as pancreatitis, pancreatic cystic fibrosis etc.), autoimmune diseases (e.g., myasthenia gravis, glomerulonephritis, multiple sclerosis, Sjogren's syndrome, systemic lupus erythematosus etc.), allergic diseases (e.g., pollinosis, allergic rhinitis, anaphylactic shock, atopic dermatitis etc.), rheumatoid diseases (e.g., chronic articular rheumatism, osteoarthritis, gout etc.), thymic diseases, immune disorders (e.g., immune disorders accompanying leukocyte abnormalities, spleen function insufficiency or thymic abnormalities), genital diseases (e.g., prostatic hypertrophy, prostatitis, testis neurosis, ovarian cystoma etc.), spleen diseases, cancers (e.g., testis tumor, ovarian cancer, breast cancer, esophagus cancer, lung cancer, kidney cancer, hepatoma, non-small cell lung cancer, prostate cancer, stomach cancer, bladder cancer, uterine cervix cancer, colon cancer, rectum cancer, pancreatic cancer, thymoma, myoma etc.), diabetes, hypertension, ischemia-reperfusion injury, central nerve diseases (e.g., Alzheimer's disease, Parkinson's syndrome, schizophrenia, cerebral vascular dementia, cerebral ischemia, epilepsy etc.) etc., preferably respiratory diseases, renal diseases, digestive diseases etc.
The compound or its salt that promotes the promoter activity for the DNA encoding the protein C of the present invention can promote the expression of the protein C of the present invention to promote the functions of the protein, and is thus useful as a medicine such as a prophylactic/therapeutic agent for diseases such as pancreatic diseases (e.g., pancreatic function insufficiency such as pancreatitis, pancreatic cystic fibrosis etc.), genital diseases (e.g., prostatic hypertrophy, prostatitis, testis neurosis, ovarian cystoma etc.), central nerve diseases (e.g., Alzheimer's disease, Parkinson's syndrome, schizophrenia, cerebral vascular dementia, cerebral ischemia, epilepsy etc.), digestive diseases (e.g., irritable bowel syndrome, ulcerous colitis, Crohn's disease, ischemic colitis, gastritis, digestive ulcer, rectitis, reflux esophagitis, duodenitis etc.), respiratory diseases (e.g., chronic obstructive pulmonary disease, asthma etc.), diabetes, hyperlipemia, cholestasis, or cancers (e.g., testis tumor, ovarian cancer, breast cancer, esophagus cancer, lung cancer, kidney cancer, hepatoma, non-small cell lung cancer, prostate cancer, stomach cancer, bladder cancer, uterine cervix cancer, colon cancer, rectum cancer, pancreatic cancer, thymoma, myoma etc.) etc., preferably pancreatic diseases, central nerve diseases, digestive diseases, respiratory diseases etc.
The compound or its salt that inhibits the promoter activity for the DNA encoding the protein C of the present invention can inhibit the expression of the protein C of the present invention to inhibit the functions of the protein, and is thus useful as a medicine such as a prophylactic/therapeutic agent for diseases such as pancreatic diseases (e.g., pancreatic function insufficiency such as pancreatitis, pancreatic cystic fibrosis etc.), genital diseases (e.g., prostatic hypertrophy, prostatitis, testis neurosis, ovarian cystoma etc.), central nerve diseases (e.g., Alzheimer's disease, Parkinson's syndrome, schizophrenia, cerebral vascular dementia, cerebral ischemia, epilepsy etc.), digestive diseases (e.g., irritable bowel syndrome, ulcerous colitis, Crohn's disease, ischemic colitis, gastritis, digestive ulcer, rectitis, reflux esophagitis, duodenitis etc.), respiratory diseases (e.g., chronic obstructive pulmonary disease, asthma etc.), diabetes, hyperlipemia, cholestasis, or cancers (e.g., testis tumor, ovarian cancer, breast cancer, esophagus cancer, lung cancer, kidney cancer, hepatoma, non-small cell lung cancer, prostate cancer, stomach cancer, bladder cancer, uterine cervix cancer, colon cancer, rectum cancer, pancreatic cancer, thymoma, myoma etc.) etc., preferably pancreatic diseases, central nerve diseases, digestive diseases, respiratory diseases etc.
The compound or its salt that promotes the promoter activity for the DNA encoding the protein D of the present invention can promote the expression of the protein D of the present invention to promote the functions of the protein, and is thus useful as a medicine such as a prophylactic/therapeutic agent for diseases such as inflammatory diseases (e.g., septicemia, pneumonia, encephalitis, meningitis, hepatitis, myocarditis, pleurisy etc.), autoimmune diseases (e.g., myasthenia gravis, glomerulonephritis, multiple sclerosis, Sjogren's syndrome, systemic lupus erythematosus etc.), allergic diseases (e.g., pollinosis, allergic rhinitis, anaphylactic shock, atopic dermatitis etc.), rheumatoid diseases (e.g., chronic articular rheumatism, osteoarthritis, gout etc.), diabetic neurosis, thymic diseases, immune disorders (e.g., immune disorders accompanying leukocyte abnormalities, spleen function insufficiency or thymic abnormalities), digestive diseases (e.g., irritable bowel syndrome, ulcerous colitis, Crohn's disease, ischemic colitis, gastritis, digestive ulcer, rectitis, reflux esophagitis, duodenitis etc.), respiratory diseases (e.g., chronic obstructive pulmonary disease, asthma etc.), circulatory diseases (e.g., cardiac insufficiency, arrhythmia, long QT syndrome, arteriosclerosis, angina etc.), hepatic diseases (e.g., hepatocirrhosis etc.), renal diseases (e.g., renal insufficiency, uremia etc.), muscular diseases (e.g., muscular dystrophy etc.), pancreatic diseases (e.g., pancreatic function insufficiency such as pancreatitis, pancreatic cystic fibrosis etc.), genital diseases (e.g., prostatic hypertrophy, prostatitis, testis neurosis, ovarian cystoma etc.), burns, pain syndrome (e.g., cancerous sharp pain, referred pain etc.), cancers (e.g., testis tumor, ovarian cancer, breast cancer, esophagus cancer, lung cancer, kidney cancer, hepatoma, non-small cell lung cancer, prostate cancer, stomach cancer, bladder cancer, uterine cervix cancer, colon cancer, rectum cancer, pancreatic cancer, thymoma, myoma etc.) etc., preferably inflammatory diseases, rheumatoid diseases, diabetic neurosis etc.
The compound or its salt that inhibits the promoter activity for the DNA encoding the protein D of the present invention can inhibit the expression of the protein D of the present invention to inhibit the functions of the protein, and is thus useful as a medicine such as a prophylactic/therapeutic agent for diseases such as inflammatory diseases (e.g., septicemia, pneumonia, encephalitis, meningitis, hepatitis, myocarditis, pleurisy etc.), autoimmune diseases (e.g., myasthenia gravis, glomerulonephritis, multiple sclerosis, Sjogren's syndrome, systemic lupus erythematosus etc.), allergic diseases (e.g., pollinosis, allergic rhinitis, anaphylactic shock, atopic dermatitis etc.), rheumatoid diseases (e.g., chronic articular rheumatism, osteoarthritis, gout etc.), diabetic neurosis, thymic diseases, immune disorders (e.g., immune disorders accompanying leukocyte abnormalities, spleen function insufficiency or thymic abnormalities), digestive diseases (e.g., irritable bowel syndrome, ulcerous colitis, Crohn's disease, ischemic colitis, gastritis, digestive ulcer, rectitis, reflux esophagitis, duodenitis etc.), respiratory diseases (e.g., chronic obstructive pulmonary disease, asthma etc.), circulatory diseases (e.g., cardiac insufficiency, arrhythmia, long QT syndrome, arteriosclerosis, angina etc.), hepatic diseases (e.g., hepatocirrhosis etc.), renal diseases (e.g., renal insufficiency, uremia etc.), muscular diseases (e.g., muscular dystrophy etc.), pancreatic diseases (e.g., pancreatic function insufficiency such as pancreatitis, pancreatic cystic fibrosis etc.), genital diseases (e.g., prostatic hypertrophy, prostatitis, testis neurosis, ovarian cystoma etc.), burns, pain syndrome (e.g., cancerous sharp pain, referred pain etc.), cancers (e.g., testis tumor, ovarian cancer, breast cancer, esophagus cancer, lung cancer, kidney cancer, hepatoma, non-small cell lung cancer, prostate cancer, stomach cancer, bladder cancer, uterine cervix cancer, colon cancer, rectum cancer, pancreatic cancer, thymoma, myoma etc.) etc., preferably inflammatory diseases, rheumatoid diseases, diabetic neurosis etc.
Further, a compound derived from the compound obtained in the above screening can also be used similarly.
The medicine comprising the compound or its salt obtained by the screening method can be produced in a manner similar to the method for preparing the medicine comprising the protein of the present invention or its salt described hereinabove.
Since the thus obtained medicine is safe and low toxic, and can be administered to, for example, human and warm-blooded animal (e.g., rat, mouse, guinea pig, rabbit, sheep, swine, bovine, horse, cat, dog, monkey, etc.).
The dose of the compound or its salt may vary depending on target disease, subject to be administered, route for administration, etc. When the compound promoting the promoter activity for the DNA of the present invention is orally administered, the compound is administered to adult (as 60 kg) as a patient with hyperlipemia generally in a daily dose of approximately 0.1 mg to 100 mg, preferably approximately 1.0 mg to 50 mg, more preferably approximately 1.0 to 20 mg. When the compound is parenterally administered, a single dose of the compound may vary depending on subject to be administered, target disease, etc. When the compound promoting the promoter activity for the DNA of the present invention is administered in the form of an injection to adult (as 60 kg body weight) as a patient with hyperlipemia, it is convenient to administer the compound by intravenous injection in a daily dose of approximately 0.01 to 30 mg, preferably approximately 0.1 to 20 mg, more preferably approximately 0.1 to 10 mg. For other animal species, the corresponding dose as converted per 60 kg weight can be administered.
On the other hand, when the compound inhibiting the promoter activity for the DNA of the present invention is orally administered, the compound is administered to adult (as 60 kg) as a patient with hyperlipemia generally in a daily dose of approximately 0.1 mg to 100 mg, preferably approximately 1.0 mg to 50 mg, more preferably approximately 1.0 to 20 mg. When the compound is parenterally administered, a single dose of the compound may vary depending on subject to be administered, target disease, etc. When the compound inhibiting the promoter activity for the DNA of the present invention is administered in the form of an injection to adult (as 60 kg body weight) as a patient with hyperlipemia, it is convenient to administer the compound by intravenous injection in a daily dose of approximately 0.01 to 30 mg, preferably approximately 0.1 to 20 mg, more preferably approximately 0.1 to 10 mg. For other animal species, the corresponding dose as converted per 60 kg weight can be administered.
Thus, the non-human mammal deficient in expression of the DNA of the present invention is extremely useful in screening a compound or its salt that promotes or inhibits the activity of a promoter for the DNA of the present invention, and can contribute significantly to elucidation of causes for various diseases attributable to deficient expression of the DNA of the present invention or development of a prophylactic/therapeutic agent for the diseases.
Further, genes encoding various proteins are ligated downstream DNA containing a promoter region for the protein of the present invention and injected into a fertilized egg of an animal to create a transgenic animal by which the protein of the present invention can be specifically synthesized and examined for its action in the living body. When a suitable reporter gene is ligated to the promoter region to establish a cell strain expressing the same, the cell strain can be used as a system of searching for a low-molecular compound having an action of specifically promoting or suppressing the ability of the cell strain to produce the protein of the present invention in vivo.
[8] Determination of a Ligand to the Protein D of the Present InventionThe protein D of the present invention or its partial peptide or its salts are useful as reagents for searching and determining ligands to the protein D of the present invention or its salts.
That is, the present invention provides a method for determining a ligand to the protein D of the present invention, which comprises bringing the protein D of the present invention or its partial peptide or its salts, into contact with a test compound.
Examples of the test compound include publicly known ligands (e.g., angiotensin, bombesin, canavinoid, cholecystokinin, glutamine, serotonin, melatonin, neuropeptide Y, opioid, purines, vasopressin, oxytocin, PACAP (e.g., PACAP27, PACAP38), secretin, glucagon, calcitonin, adrenomedulin, somatostatin, GHRH, CRF, ACTH, GRP, PTH, VIP (vasoactive intestinal and related polypeptide), somatostatin, dopamine, motilin, amylin, bradykinin, CGRP (calcitonin gene-related peptide), leukotrienes, pancreastatin, prostaglandins, thromboxane, adenosine, adrenaline, a chemokine superfamily (e.g., CXC chemokine subfamily such as IL-8, GROα, GROβ, GROγ, NAP-2, ENA-78, GCP-2, PF4, IP10, Mig, PBSF/SDF-1, etc.; CC chemokine subfamily such as MCAF/MCP-1, MCP-2, MCP-3, MCP-4, eotaxin, RANTES, MIP1-α, MIP-1β, HCC-1, MIP-3α/LARC, MIP-3β/ELC, I-309, TARC, MIPF-1, MIPF-2/eotaxin-2, MDC, DC-CK1/PARC, SLC, etc.; C chemokine subfamily such as lymphotactin; and CX3C chemokine subfamily such as fractalkine, etc.), endothelin, enterogastrin, histamine, neurotensin, TRH, pancreatic polypeptide, galanin, lysophosphatidic acid (LPA), sphingosine 1-phosphate, vanilloid, nucleotide, etc.) as well as other substances, for example, tissue extracts and cell culture supernatants from mammals (e.g., humans, mice, rats, swine, bovine, sheep, monkeys, etc.). For example, the tissue extract or cell culture supernatant is added to the protein D of the present invention and fractionated while assaying the cation channel activities, etc. to finally give a single ligand.
In more detail, the method for determining ligands of the present invention comprises determining compounds (e.g., peptides, proteins, non-peptide compounds, synthetic compounds, fermentation products, nucleotides, etc.) or salts thereof that bind to the protein D of the present invention to provide cation channel activities (e.g., Ca2+ channel activity etc.), using the protein D of the present invention, or by the ligand binding assay using the constructed recombinant protein D expression system.
The method for determining ligands according to the present invention is characterized, for example, by measurement of the amount of the test compound bound to the protein D or its partial peptide, or by assaying the cation channel activities, etc., when the test compound is brought into contact with the protein D of the present invention or its partial peptide.
More specifically, the present invention provides:
(i) A method for determining ligands to the protein D of the present invention or its salt, which comprises bringing a labeled test compound into contact with the protein D of the present invention or its salt or the partial peptide of the present invention or its salt and measuring the amount of the labeled test compound bound to the protein or its salt or to the partial peptide or its salt;
(ii) A method for determining ligands to the protein D of the present invention or its salt, which comprises bringing a labeled test compound into contact with cells or cell membrane fraction containing the protein D of the present invention, and measuring the amount of the labeled test compound bound to the cells or the membrane fraction;
(iii) A method for determining ligands to the protein D of the present invention, which comprises culturing a transformant containing the DNA encoding the protein D of the present invention, bringing a labeled test compound into contact with the protein D expressed on the cell membrane by said culturing, and measuring the amount of the labeled test compound bound to the protein D or its salt; and
(iv) A method for determining ligands to the protein D of the present invention or its salt, which comprises bringing a test compound into contact with cells containing the protein D of the present invention and measuring the protein D-mediated cation channel activities (e.g., Ca2+ channel activity etc.).
It is particularly preferred to perform the tests (i) to (iii) described above thereby confirming that the test compound can bind to the protein D of the present invention, followed by the test (iv) described above.
As the protein D used in the method of determining ligands, any material comprising the protein D of the present invention or the partial peptide of the present invention may be used, but the protein produced in a large amount by animal cells is appropriate.
The protein D of the present invention can be manufactured by the expression method described above, preferably by expressing DNA encoding the protein D in mammalian or insect cells. As DNA fragments encoding the desired portion of the protein, complementary DNA is generally used but not necessarily limited thereto. For example, gene fragments or synthetic DNA may also be used. For introducing a DNA fragment encoding the protein D of the present invention into host animal cells and efficiently expressing the same, it is preferred to insert the DNA fragment downstream a polyhedrin promoter of nuclear polyhedrosis virus (NPV), which is a baculovirus having insect hosts, an SV40-derived promoter, a retrovirus promoter, a metallothionein promoter, a human heat shock promoter, a cytomegalovirus promoter, an SRα promoter or the like. The amount and quality of the channel expressed can be determined by a publicly known method. For example, this determination can be made by the method described in the literature (Nambi, P., et al., J. Biol. Chem., 267, 19555-19559 (1992)).
Accordingly, the subject containing the protein D of the present invention, its partial peptides or salts thereof in the method for determining the ligand according to the present invention may be the protein D, its partial peptides or salts thereof purified by publicly known methods, cells containing the protein D, or membrane fractions of such cells.
In the ligand determination method of the present invention where cells containing the protein D of the present invention are used, the cells may be fixed with glutaraldehyde, formalin, etc. The cells can be fixed by publicly known methods.
The cells containing the protein D of the present invention are host cells that have expressed the protein D. As the host cells, Escherichia coli, Bacillus subtilis, yeast, insect cells, animal cells and the like are used.
The cell membrane fraction refers to a fraction abundant in cell membrane obtained by cell disruption and subsequent fractionation by a publicly known method. Cell disruption methods include cell squashing using a Potter-Elvehjem homogenizer, disruption using a Waring blender or Polytron (manufactured by Kinematica Inc.), disruption by ultrasonication, and disruption by cell spraying through thin nozzles under an increased pressure using a French press or the like. Cell membrane fractionation is effected mainly by fractionation using a centrifugal force, such as centrifugation for fractionation and density gradient centrifugation. For example, cell disruption fluid is centrifuged at a low speed (500 rpm to 3,000 rpm) for a short period of time (normally about 1 to about 10 minutes), and the resulting supernatant is then centrifuged at a higher speed (15,000 rpm to 30,000 rpm) normally for 30 minutes to 2 hours. The precipitate thus obtained is used as the membrane fraction. The membrane fraction is rich in the protein D expressed and membrane components such as cell-derived phospholipids and membrane proteins.
The amount of the protein D in the protein D-containing cells or membrane fraction is preferably 103 to 108 molecules per cell, more preferably 105 to 107 molecules per cell. As the amount of expression increases, the ligand binding activity per unit of membrane fraction (specific activity) increases so that not only the highly sensitive screening system can be constructed but also large quantities of samples can be assayed with the same lot.
To perform the methods (i) through (iii) supra for determination of a ligand to the protein D of the present invention or its salt, an appropriate protein D fraction and a labeled test compound are required.
The protein D fraction is preferably a fraction of naturally occurring protein D or a recombinant channel fraction having an equivalent activity to that of the natural protein. Herein, the term “equivalent activity” is intended to mean a ligand binding activity, a cation channel activity or the like that is equivalent to that possessed by the naturally occurring protein.
Preferred examples of labeled test compounds include angiotensin, bombesin, canavinoid, cholecystokinin, glutamine, serotonin, melatonin, neuropeptide Y, opioid, purines, vasopressin, oxytocin, PACAP (e.g., PACAP27, PACAP38), secretin, glucagon, calcitonin, adrenomedulin, somatostatin, GHRH, CRF, ACTH, GRP, PTH, VIP (vasoactive intestinal polypeptide), somatostatin, dopamine, motilin, amylin, bradykinin, CGRP (calcitonin gene-related peptide), leukotrienes, pancreastatin, prostaglandins, thromboxane, adenosine, adrenaline, a chemokine superfamily (e.g., CXC chemokine subfamily such as IL-8, GROα, GROβ, GROγ, NAP-2, ENA-78, GCP-2, PF4, IP10, Mig, PBSF/SDF-1, etc.; CC chemokine subfamily such as MCAF/MCP-1, MCP-2, MCP-3, MCP-4, eotaxin, RANTES, MIP1-α, MIP-1β, HCC-1, MIP-3α/LARC, MIP-3β/ELC, I-309, TARC, MIPF-1, MIPF-2/eotaxin-2, MDC, DC-CK1/PARC, SLC, etc.; C chemokine subfamily such as lymphotactin; and CX3C chemokine subfamily such as/fractalkine, etc.), endothelin, enterogastrin, histamin, neurotensin, TRH, pancreatic polypeptide, galanin, lysophosphatidic acid (LPA) or sphingosine 1-phosphate, vanilloid, nucleotide etc.), which are labeled with [3H], [125I], [14C], [35S], etc.
Specifically, the ligand to the protein D of the present invention or its salt is determined by the following procedures. First, a standard channel preparation is prepared by suspending cells containing the protein D of the present invention or the membrane fraction thereof in a buffer appropriate for use in the determination method. Any buffer can be used so long as it does not inhibit the ligand-protein D binding, such buffers including a phosphate buffer or a Tris-HCl buffer having pH of 4 to 10 (preferably pH of 6 to 8). For the purpose of minimizing non-specific binding, a surfactant such as CHAPS, TWEEN-80™ (Polyoxyethylene (20) Sorbitan Monooleate) (manufactured by Kao-Atlas Inc.), digitonin or deoxycholate, and various proteins such as bovine serum albumin or gelatin, may optionally be added to the buffer. Further for the purpose of suppressing the degradation of the receptors or ligands by proteases, a protease inhibitor such as PMSF, leupeptin, E-64 (manufactured by Peptide Institute, Inc.) and pepstatin may also be added. A given amount (5,000 to 500,000 cpm) of the test compound labeled with [3H], [125I], [14C], [35S] or the like is added to 0.01 ml to 10 ml of the protein solution. To determine the amount of non-specific binding (NSB), a reaction tube containing an unlabeled test compound in large excess is also prepared. The reaction is carried out at approximately 0 to 50° C., preferably about 4 to 37° C. for about 20 minutes to about 24 hours, preferably about 30 minutes to about 3 hours. After completion of the reaction, the reaction mixture is filtrated through glass fiber filter paper, etc. and washed with an appropriate volume of the same buffer. The residual radioactivity on the glass fiber filter paper is then measured by means of a liquid scintillation counter or γ-counter. A test compound exceeding 0 cpm in count obtained by subtracting nonspecific binding (NSB) from the total binding (B) (B minus NSB) can be selected as a ligand to the protein D of the present invention or its salt.
The method (iv) above for determination of a ligand to the protein D of the present invention or its salt can be performed as follows. The protein D-mediated cation channel activities (e.g., Ca2+ channel activity etc.) may be determined by a publicly known method, or using an assay kit commercially available. Specifically, cells containing the protein D are first cultured on a multi-well plate, etc. Prior to the ligand determination, the medium is replaced with fresh medium or with an appropriate non-cytotoxic buffer, followed by incorporation of a fluorescent Ca2+ probe (for example, Fura-2, Fuo-3 or the like) and subsequent measurement of fluorescence density by FLIPR (Molecular Devices, Ltd.) etc. for a given period of time in the presence of a test compound, etc. The kit of the present invention for determination of the ligand that binds to the protein D of the present invention or its salt comprises the protein D of the present invention or its salt, the partial peptide of the present invention or its salt, cells comprising the protein D of the present invention, or the membrane fraction of the cells containing the protein D of the present invention.
In the specification and drawings, the codes of bases and amino acids are denoted in accordance with the IUPAC-IUB Commission on Biochemical Nomenclature or by the common codes in the art, examples of which are shown below. For amino acids that may have the optical isomer, L form is presented unless otherwise indicated.
DNA: deoxyribonucleic acid
cDNA: complementary deoxyribonucleic acid
A: adenine
T: thymine
G: guanine
C: cytosine
RNA: ribonucleic acid
mRNA: messenger ribonucleic acid
dATP: deoxyadenosine triphosphate
dTTP: deoxythymidine triphosphate
dGTP: deoxyguanosine triphosphate
dCTP: deoxycytidine triphosphate
ATP: adenosine triphosphate
EDTA: ethylenediaminetetraacetic acid
SDS: sodium dodecyl sulfate
Gly: glycine
Ala: alanine
Val: valine
Leu: leucine
Ile: isoleucine
Ser: serine
Thr: threonine
Cys: cysteine
Met: methionine
Glu: glutamic acid
Asp: aspartic acid
Lys: lysine
Arg: arginine
His: histidine
Phe: phenylalanine
Tyr: tyrosine
Trp: tryptophan
Pro: proline
Asn: asparagine
Gln: glutamine
pGlu: pyroglutamic acid
The substituents, protective groups and reagents, which are frequently used throughout the specification, are shown by the following abbreviations.
Me: methyl
Et: ethyl
Bu: butyl
Ph: phenyl
TC: thiazolidine-4(R)-carboxamide
Tos: p-toluenesulfonyl
CHO: formyl
Bzl: benzyl
Cl2Bzl: 2,6-dichlorobenzyl
Bom: benzyloxymethyl
Z: benzyloxycarbonyl
Cl-Z: 2-chlorobenzyloxycarbonyl
Br-Z: 2-bromobenzyloxycarbonyl
Boc: t-butoxycarbonyl
DNP: dinitrophenyl
Trt: trityl
Bum: t-butoxymethyl
Fmoc: N-9-fluorenylmethoxycarbonyl
HOBt: 1-hydroxybenztriazole
HOOBt: 3,4-dihydro-3-hydroxy-4-oxo-1,2,3-benzotriazine
HONB: 1-hydroxy-5-norbornene-2,3-dicarboxylmide
DCC: N,N′-dicyclohexylcarbodiimide
The sequence identification numbers in the sequence listing of the specification indicate the following sequences, respectively.
[SEQ ID NO. 1]This shows the amino acid sequence of human TCH230 (SEQ ID NO:1) protein consisting of 377 amino acids, which was obtained in Example 1.
[SEQ ID NO: 2]This shows the base sequence of DNA encoding human TCH230 protein having the amino acid sequence represented by SEQ ID NO. 1.
[SEQ ID NO: 3]This shows the base sequence of primer OF used in Example 1.
[SEQ ID NO: 4]This shows the base sequence of primer OR1 used in Example 1.
[SEQ ID NO: 5]This shows the base sequence of primer OF1 used in Example 1.
[SEQ ID NO: 6]This shows the base sequence of primer OR used in Example 1.
[SEQ ID NO: 7]This shows the base sequence of primer SP6 used in Examples 1 and 13.
[SEQ ID NO: 8]This shows the base sequence of primer T7 used in Examples 1, 13, 18, 25 and 33.
[SEQ ID NO: 9]This shows the base sequence of primer B1 used in Examples 1 and 18.
[SEQ ID NO. 10]This shows the base sequence of primer F1 used in Examples 1 and 18.
[SEQ ID NO. 11]This shows the base sequence of cDNA derived from human small intestine cDNA comprising the full-length TCH230 gene obtained in Example 1.
[SEQ ID NO. 12]This shows the base sequence of cDNA derived from human skeletal muscle cDNA comprising the full-length TCH230 gene obtained in Example 1.
[SEQ ID NO. 13]This shows the base sequence of DNA encoding human TCH230 (SEQ ID NO:1) protein comprising the amino acid sequence represented by SEQ ID NO. 14.
[SEQ ID NO. 14]This shows the amino acid sequence of human TCH230 (SEQ ID NO:1) protein comprising an amino acid sequence encoded by the base sequence represented by SEQ ID NO. 13.
[SEQ ID NO. 15]This shows the base sequence of primer TF used in Examples 2, 19 and 38.
[SEQ ID NO. 16]This shows the base sequence of primer TR used in Examples 2, 19 and 38.
[SEQ ID NO. 17]This shows the base sequence of TaqMan probe T1 used in Examples 2, 19 and 38.
[SEQ ID NO. 18]This shows the amino acid sequence of human TCH234 (SEQ ID NO:18) protein obtained in Example 1.
[SEQ ID NO. 19]This shows the base sequence of DNA encoding human TCH234 (SEQ ID NO:18) protein having the amino acid sequence represented by SEQ ID NO. 19.
[SEQ ID NO: 20]This shows the base sequence of primer AP1 used in Example 3.
[SEQ ID NO: 21]This shows the base sequence of primer rr0 used in Example 3.
[SEQ ID NO: 22]This shows the base sequence of primer AP2 used in Example 3.
[SEQ ID NO: 23]This shows the base sequence of primer rr1 used in Example 3.
[SEQ ID NO: 24]This shows the base sequence of primer ff1 used in Example 4.
[SEQ ID NO: 25]This shows the base sequence of primer ff2 used in Examples 4, 5 and 25.
[SEQ ID NO: 26]This shows the base sequence of primer ORFF1 used in Example 5.
[SEQ ID NO: 27]This shows the base sequence of primer ORFR1 used in Example 5.
[SEQ ID NO: 28]This shows the base sequence of primer ORFF2 used in Example 5.
[SEQ ID NO: 29]This shows the base sequence of primer ORFR2 used in Example 5.
[SEQ ID NO: 30]This shows the base sequence of primer M13F used in Example 5.
[SEQ ID NO: 31]This shows the base sequence of primer M13R used in Example 5.
[SEQ ID NO: 32]This shows the base sequence of primer TMF used in Examples 6, 27, 28 and 38.
[SEQ ID NO: 33]This shows the base sequence of primer TMR used in Examples 6, 27, 28 and 38.
[SEQ ID NO: 34]This shows the base sequence of primer F2 used in Example 5.
[SEQ ID NO: 35]This shows the base sequence of primer F3 used in Examples 5 and 25.
[SEQ ID NO: 36]This shows the base sequence of primer R1 used in Example 5.
[SEQ ID NO: 37]This shows the base sequence of primer R2 used in Examples 5 and 25.
[SEQ ID NO: 38]This shows the base sequence of TaqMan probe P1 used in Examples 6, 27, 28 and 38.
[SEQ ID NO: 39]This shows the base sequence of cDNA obtained in Example 3.
[SEQ ID NO: 40]This shows the base sequence of cDNA obtained in Example 4.
[SEQ ID NO: 41]This shows the base sequence of cDNA obtained in Example 5.
[SEQ ID NO: 42]This shows the amino acid sequence of human TCH212 (SEQ ID NO:42) protein obtained in Example 7.
[SEQ ID NO: 43]This shows the base sequence of DNA encoding human TCH212 protein having the amino acid sequence represented by SEQ ID NO: 42.
[SEQ ID NO: 44]This shows the base sequence of primer A3 used in Example 7.
[SEQ ID NO: 45]This shows the base sequence of primer B3 used in Example 7.
[SEQ ID NO: 46]This shows the base sequence of primer SP6 used in Example 7.
[SEQ ID NO: 47]This shows the base sequence of primer T7 used in Example 7.
[SEQ ID NO: 48]This shows the base sequence of primer A2 used in Examples 7 and 33.
[SEQ ID NO: 49]This shows the base sequence of primer B1 used in Examples 7 and 33.
[SEQ ID NO: 50]This shows the base sequence of primer B2 used in Examples 7 and 33.
[SEQ ID NO: 51]This shows the base sequence of primer F1 used in Examples 7 and 33.
[SEQ ID NO: 52]This shows the base sequence of primer F2 used in Examples 7 and 33.
[SEQ ID NO: 53]This shows the base sequence of primer F3 used in Examples 7 and 33.
[SEQ ID NO: 54]This shows the base sequence of primer F4 used in Examples 7 and 33.
[SEQ ID NO: 55]This shows the base sequence of primer F5 used in Examples 7 and 33.
[SEQ ID NO: 56]This shows the base sequence of primer R1 used in Examples 7 and 33.
[SEQ ID NO: 57]This shows the base sequence of primer R2 used in Examples 7 and 33.
[SEQ ID NO: 58]This shows the base sequence of primer R3 used in Examples 7 and 33.
[SEQ ID NO: 59]This shows the base sequence of primer R4 used in Examples 7 and 33.
[SEQ ID NO: 60]This shows the base sequence of cDNA comprising the full-length human TCH212 (SEQ ID NO:42) gene obtained in Example 7.
[SEQ ID NO: 61]This shows the base sequence of cDNA comprising the full-length human TCH212 (SEQ ID NO:42) clone #2 obtained in Example 7.
[SEQ ID NO: 62]This shows the base sequence of ORF in human TCH212 (SEQ ID NO:42) clone #2 obtained in Example 7.
[SEQ ID NO: 63]This shows the base sequence of primer TF used in Examples 8 and 38.
[SEQ ID NO: 64]This shows the base sequence of primer TR used in Examples 8 and 38.
[SEQ ID NO: 65]This shows the base sequence of TaqMan probe T1 used in Examples 8 and 38.
[SEQ ID NO: 66]This shows the amino acid sequence of human TCH200 (SEQ ID NO:66) protein.
[SEQ ID NO: 67]This shows the base sequence of DNA encoding human TCH200 protein comprising the amino acid sequence represented by SEQ ID NO: 66.
[SEQ ID NO: 68]This shows the base sequence of primer API used in Example 9.
[SEQ ID NO: 69]This shows the base sequence of primer R1 used in Example 9.
[SEQ ID NO: 70]This shows the base sequence of primer AP2 used in Example 9.
[SEQ ID NO: 71]This shows the base sequence of primer rr2 used in Example 9.
[SEQ ID NO: 72]This shows the base sequence of primer M13F used in Example 9.
[SEQ ID NO: 73]This shows the base sequence of primer M13R used in Example 9.
[SEQ ID NO: 74]This shows the base sequence of primer rr4 used in Example 9.
[SEQ ID NO: 75]This shows the base sequence of primer rr6 used in Example 9.
[SEQ ID NO: 76]This shows the base sequence of primer r1 used in Example 10.
[SEQ ID NO: 77]This shows the base sequence of primer r2 used in Example 10.
[SEQ ID NO: 78]This shows the base sequence of primer f1 used in Example 10.
[SEQ ID NO: 79]This shows the base sequence of primer f2 used in Example 10.
[SEQ ID NO: 80]This shows the base sequence of primer f4 used in Example 10.
[SEQ ID NO: 81]This shows the base sequence of primer F0 used in Example 11.
[SEQ ID NO: 82]This shows the base sequence of primer R7 used in Example 11.
[SEQ ID NO: 83]This shows the base sequence of primer F00 used in Example 11.
[SEQ ID NO: 84]This shows the base sequence of primer R00 used in Example 11.
[SEQ ID NO: 85]This shows the base sequence of primer F1 used in Example 11.
[SEQ ID NO: 86]This shows the base sequence of primer F2 used in Example 11.
[SEQ ID NO: 87]This shows the base sequence of primer F5 used in Example 11.
[SEQ ID NO: 88]This shows the base sequence of primer F7 used in Example 11.
[SEQ ID NO: 89]This shows the base sequence of primer ff3 used in Example 11.
[SEQ ID NO: 90]This shows the base sequence of primer ff4 used in Example 11.
[SEQ ID NO: 91]This shows the base sequence of primer f3 used in Example 11.
[SEQ ID NO: 92]This shows the base sequence of primer rr1 used in Example 11.
[SEQ ID NO: 93]This shows the base sequence of primer rr3 used in Example 11.
[SEQ ID NO: 94]This shows the base sequence of primer TMF used in Examples 12, 37 and 38.
[SEQ ID NO: 95]This shows the base sequence of primer TMR used in Examples 12, 37 and 38.
[SEQ ID NO: 96]This shows the base sequence of TaqMan probe P1 used in Examples 12, 37 and 38.
[SEQ ID NO: 97]This shows the base sequence of cDNA obtained in Example 9.
[SEQ ID NO: 98]This shows the base sequence of cDNA obtained in Example 9.
[SEQ ID NO: 99]This shows the base sequence of cDNA obtained in Example 10.
[SEQ ID NO. 100]This shows the base sequence of cDNA obtained in Example 10.
[SEQ ID NO. 101]This shows the base sequence of cDNA obtained in Example 10.
[SEQ ID NO. 102]This shows the base sequence of cDNA obtained in Example 11.
[SEQ ID NO. 103]This shows the base sequence of DNA encoding human TCH200 protein comprising the amino acid sequence represented by SEQ ID NO: 66.
[SEQ ID NO. 104]This shows the amino acid sequence of mouse TCH230 (SEQ ID NO:112) protein consisting of 373 amino acids, which was obtained in Example 13.
[SEQ ID NO. 105]This shows the base sequence of DNA encoding mouse TCH230 (SEQ ID NO:112) protein having the amino acid sequence represented by SEQ ID NO. 104.
[SEQ ID NO. 106]This shows the base sequence of primer m230A1 used in Example 13.
[SEQ ID NO. 107]This shows the base sequence of primer m230B2 used in Example 13.
[SEQ ID NO. 108]This shows the base sequence of primer m230F1 used in Example 13.
[SEQ ID NO. 109]This shows the base sequence of primer m230F2 used in Example 13.
[SEQ ID NO. 110]This shows the base sequence of primer m230R1 used in Example 13.
[SEQ ID NO. 111]This shows the base sequence of primer m230R2 used in Example 13.
[SEQ ID NO. 112]This shows the base sequence of cDNA comprising the full-length mouse TCH230 (SEQ ID NO:112) gene obtained in Example 13.
[SEQ ID NO. 113]This shows the base sequence of primer m230TF used in Examples 14, 15 and 40.
[SEQ ID NO. 114]This shows the base sequence of primer m230TR used in Examples 14, 15 and 40.
[SEQ ID NO. 115]This shows the base sequence of TaqMan probe m230T1 used in Examples 14, 15 and 40.
[SEQ ID NO. 116]This shows the base sequence of a partial sequence of rat TCH230 gene cDNA identified in Example 16.
[SEQ ID NO. 117]This shows the base sequence of primer r230OF used in Example 16.
[SEQ ID NO. 118]This shows the base sequence of primer r230OR used in Example 16.
[SEQ ID NO. 119]This shows the base sequence of primer r230TF used in Example 17.
[SEQ ID NO. 120]This shows the base sequence of primer r230TR used in Example 17.
[SEQ ID NO. 121]This shows the base sequence of TaqMan probe r230T1 used in Example 17.
[SEQ ID NO. 122]This shows the base sequence of primer 230OF2 used in Example 18.
[SEQ ID NO. 123]This shows the base sequence of primer 230OR2 used in Example 18.
[SEQ ID NO. 124]This shows the base sequence of primer BGHRV used in Example 18.
[SEQ ID NO. 125]This shows the base sequence of a partial sequence of mouse TCH234 gene cDNA identified in Example 21.
[SEQ ID NO. 126]This shows the base sequence of primer m234-1485F used in Example 21.
[SEQ ID NO. 127]This shows the base sequence of primer m234-1801R used in Example 21.
[SEQ ID NO. 128]This shows the base sequence of primer m234-TMF used in Examples 22 and 39.
[SEQ ID NO. 129]This shows the base sequence of primer m234-TMR used in Examples 22 and 39.
[SEQ ID NO. 130]This shows the base sequence of primer m234T1 used in Examples 22 and 39.
[SEQ ID NO. 131]This shows the base sequence of a partial sequence of rat TCH234 gene cDNA identified in Example 23.
[SEQ ID NO. 132]This shows the base sequence of primer r234-815F used in Example 23.
[SEQ ID NO. 133]This shows the base sequence of primer r234-1177R used in Example 23.
[SEQ ID NO. 134]This shows the base sequence of primer r234-TMF used in Example 24.
[SEQ ID NO. 135]This shows the base sequence of primer r234-TMR used in Example 24.
[SEQ ID NO. 136]This shows the base sequence of primer r234-P1 used in Example 24.
[SEQ ID NO. 137]This shows the base sequence of primer 234OF used in Example 25.
[SEQ ID NO. 138]This shows the base sequence of primer 234OR used in Example 25.
[SEQ ID NO. 139]This shows the base sequence of primer 234F21 used in Example 25.
[SEQ ID NO. 140]This shows the base sequence of primer 234F22 used in Example 25.
[SEQ ID NO. 141]This shows the base sequence of primer 234F23 used in Example 25.
[SEQ ID NO. 142]This shows the base sequence of primer 234R24 used in Example 25.
[SEQ ID NO. 143]This shows the base sequence of a partial sequence of mouse TCH212 (SEQ ID NO:143) gene cDNA identified in Example 29.
[SEQ ID NO. 144]This shows the base sequence of primer m212A1 used in Examples 29 and 31.
[SEQ ID NO. 145]This shows the base sequence of primer m212B1 used in Examples 29 and 31.
[SEQ ID NO. 146]This shows the base sequence of primer m212TF used in Example 30.
[SEQ ID NO. 147]This shows the base sequence of primer m212TR used in Example 30.
[SEQ ID NO. 148]This shows the base sequence of TaqMan probe m212T1 used in Example 30.
[SEQ ID NO. 149]This shows the base sequence of a partial sequence of rat TCH212 gene cDNA identified in Example 31.
[SEQ ID NO. 150]This shows the base sequence of primer r212TF used in Example 32.
[SEQ ID NO. 151]This shows the base sequence of primer r212TR used in Example 32.
[SEQ ID NO. 152]This shows the base sequence of primer r212T1 used in Example 32.
[SEQ ID NO. 153]This shows the base sequence of primer 212OF used in Example 33.
[SEQ ID NO. 154]This shows the base sequence of primer 212OR used in Example 33.
[SEQ ID NO. 155]This shows the base sequence of a partial sequence of mouse TCH200 gene cDNA identified in Example 34.
[SEQ ID NO. 156]This shows the base sequence of primer m200A1 used in Example 34.
[SEQ ID NO. 157]This shows the base sequence of primer m200B1 used in Example 34.
[SEQ ID NO. 158]This shows the base sequence of primer m200A2 used in Examples 34 and 35.
[SEQ ID NO. 159]This shows the base sequence of primer m200B2 used in Examples 34 and 35.
[SEQ ID NO. 160]This shows the base sequence of TaqMan probe m200T1 used in Example 35.
[SEQ ID NO. 161]This shows the base sequence of primer TCH200F used in Example 36.
[SEQ ID NO. 162]This shows the base sequence of primer TCH200R used in Example 36.
[SEQ ID NO. 163]This shows the base sequence of primer T7 used in Example 36.
[SEQ ID NO. 164]This shows the base sequence of primer AF used in Example 36.
[SEQ ID NO. 165]This shows the base sequence of primer BF used in Example 36.
[SEQ ID NO. 166]This shows the base sequence of primer CF used in Example 36.
[SEQ ID NO. 167]This shows the base sequence of primer DF used in Example 36.
[SEQ ID NO. 168]This shows the base sequence of primer BGH RV used in Example 36.
[SEQ ID NO. 169]This shows the base sequence of primer DR used in Example 36.
[SEQ ID NO. 170]This shows the base sequence of primer CR used in Example 36.
[SEQ ID NO. 171]This shows the base sequence of primer BR used in Example 36.
[SEQ ID NO. 172]This shows the base sequence of primer AR used in Example 36.
Transformant Escherichia coli TOP10/PCR-BluntII-TCH230 obtained in Example 1 later described has been deposited with International Patent Organism Depositary (IPOD), National Institute of Advanced Industrial Science and Technology (AIST) at Central 6, 1-1-1, Higashi, Tsukuba, Ibaraki, Japan (zip code: 305-8566), under the Accession Number FERM BP-7869 since Jan. 17, 2002, and with Institute for Fermentation, Osaka (IFO) at 17-85, Juso-honmachi 2-chome, Yodogawa-ku, Osaka, Japan (zip code: 532-8686), under the Accession Number IFO 16749 since Jan. 17, 2002.
Transformant Escherichia coli TOP10/PCR-BluntII-TCH234 obtained in Example 3 later described has been deposited with International Patent Organism Depositary (IPOD), National Institute of Advanced Industrial Science and Technology (AIST) at Central 6, 1-1-1, Higashi, Tsukuba, Ibaraki, Japan (zip code: 305-8566), under the Accession Number FERM BP-7906 since Feb. 18, 2002, and with Institute for Fermentation, Osaka (IFO) at 17-85, Juso-honmachi 2-chome, Yodogawa-ku, Osaka, Japan (zip code: 532-8686), under the Accession Number IFO 16758 since Feb. 7, 2002.
Transformant Escherichia coli JM109/PCR-BluntII-TCH212 obtained in Example 7 later described has been deposited with International Patent Organism Depositary (IPOD), National Institute of Advanced Industrial Science and Technology (AIST) at Central 6, 1-1-1, Higashi, Tsukuba, Ibaraki, Japan (zip code: 305-8566), under the Accession Number FERM BP-7888 since Feb. 12, 2002, and with Institute for Fermentation, Osaka (IFO) at 17-85, Juso-honmachi 2-chome, Yodogawa-ku, Osaka, Japan (zip code: 532-8686), under the Accession Number IFO 16755 since Jan. 31, 2002.
Transformant Escherichia coli TOP10/PCR-BluntII-TCH200 obtained in Example 9 later described has been deposited with International Patent Organism Depositary (IPOD), National Institute of Advanced Industrial Science and Technology (AIST) at Central 6, 1-1-1, Higashi, Tsukuba, Ibaraki, Japan (zip code: 305-8566), under the Accession Number FERM BP-7874 since Feb. 4, 2002, and with Institute for Fermentation, Osaka (IFO) at 17-85, Juso-honmachi 2-chome, Yodogawa-ku, Osaka, Japan (zip code: 532-8686), under the Accession Number IFO 16750 since Jan. 22, 2002.
Hereinafter, the present invention will be specifically described by reference to the Examples, but is not limited thereto. The gene manipulation procedures using Escherichia coli were performed in accordance with the methods described in the Molecular Cloning.
Example 1 Cloning of Human TCH230 (SEQ ID NO:1) Gene cDNAUsing two primer DNAs, i.e. primer OF (SEQ ID NO: 3) and primer OR1 (SEQ ID NO: 4), human small intestine Marathon-Ready cDNA and human skeletal muscle Marathon-Ready cDNA (both of which were manufactured by Clontech) were subjected to primary PCR with Pyrobest DNA Polymerase (Takara Shuzo Co., Ltd.) under the following conditions (1) to (3):
(1) reaction at 94° C. for 2 minutes,
(2) 30 cycles each consisting of reaction at 98° C. for 10 seconds, at 68° C. for 30 seconds and at 72° C. for 3 minutes, and
(3) reaction at 72° C. for 10 minutes.
Using the primary PCR product as a template, nested PCR was conducted with primer OF1 (SEQ ID NO: 5), primer OR (SEQ ID NO: 6) and Pyrobest DNA polymerase (Takara Shuzo Co., Ltd.) under the following conditions (4) to (6):
(4) reaction at 94° C. for 2 minutes,
(5) 35 cycles each consisting of reaction at 98° C. for 10 seconds, at 68° C. for 30 seconds, and at 72° C. for 3 minutes,
(6) reaction at 72° C. for 10 minutes.
The resulting amplification product was cloned by using the Zero Blunt TOPO Cloning Kit (Invitrogen, Inc.), to give plasmid pCR-BluntII-TCH230.
This product was reacted with primer DNAs [primer SP6 (SEQ ID NO: 7), primer T7 (SEQ ID NO: 8), primer B1 (SEQ ID NO: 9), primer F1 (SEQ ID NO. 10)] and BigDye Terminator Cycle Sequencing Kit (Applied Biosystems), and the base sequence of the inserted cDNA fragment was determined by DNA sequencer ABI PRISM 3100 DNA analyzer (Applied Biosystems). The result indicated that the clone obtained from human small intestine cDNA had 1152-base sequence (SEQ ID NO. 11). The cDNA fragment (SEQ ID NO: 2) coded for a 377-amino acid sequence (SEQ ID NO. 1), and the protein having the amino acid sequence was designated human TCH230 (SEQ ID NO:1) protein.
A transformant having a plasmid comprising the cDNA fragment was designated Escherichia coli TOP10/pCR-BluntII-TCH230.
In the clone obtained from the human skeletal muscle cDNA, base substitution was recognized in one site (position 340 in the base sequence represented by SEQ ID NO. 11). This base substitution A340G is accompanied by amino acid substitution of Ile→Val, and it is considered that there is a possibility to be derived from single nucleotide polymorphisms (SNPs). The base sequence of the full-length cDNA possessed by this clone is shown in SEQ ID NO. 12, and the base sequence of ORF in this base sequence is shown in SEQ ID NO. 13. The amino acid sequence encoded by the base sequence represented by SEQ ID NO. 13 is shown in SEQ ID NO. 14.
When homology with owl by using Blast P [Nucleic Acids Res., 25, 3389, 1997] was examined, the cDNA encoding human TCH230 (SEQ ID NO:1) protein was revealed to be a novel gene belonging to sodium-dependent bile acid transporter family (
Using two primer DNAs, i.e. primer TF (SEQ ID NO. 15) and primer TR (SEQ ID NO. 16), designed from the sequence of human TCH230 (SEQ ID NO:1), and TaqMan probe T1 (SEQ ID NO. 17), the expression level of human TCH230 (SEQ ID NO:1) by cDNA in each human tissue was measured by TaqMan PCR. The PCR reaction involved a reaction at 50° C. for 2 minutes and at 95° C. for 10 minutes and 40 cycles each consisting of a reaction at 95° C. for 15 seconds and at 60° C. for 1 minute by using TaqMan Universal PCR Master Mix (Applied Biosystems) in ABI PRISM 7900 sequence detection system (Applied Biosystems), and simultaneously detection was carried out. The cDNA in each tissue used in measurement is shown in Table 1.
The results are shown in
The human TCH230 (SEQ ID NO:1) gene product (mRNA) in human MTC panels I and II was slightly expressed in the heart, brain, liver, skeletal muscle, kidney, colon and peripheral blood leukocyte, expressed at a certain degree in the placenta, lung, pancreas, spleen, thymus, prostate and small intestine, and expressed strongly in the testis and ovary. In human digestive system MTC panel, strong expression was observed in every region from the stomach to rectum (particularly strong expression was observed in the esophagus). Strong expression was also observed in the liver. In human fetal MTC panel, slight expression was observed in the fetal heart, fetal skeletal muscle and fetal spleen, certain expression was observed in the fetal brain, fetal liver, fetal kidney and fetal lung, and strong expression was observed in the fetal thymus. In human tumor MTC panel, slight expression was observed in the lung cancer, colon cancer, prostate cancer and pancreatic cancer, certain expression was observed in the breast cancer, and strong expression was observed in the ovarian cancer.
Example 3 Cloning of the 5′-Upstream Terminus of cDNA Encoding Human TCH234 (SEQ ID NO:18) ProteinThe 5′-upstream base sequence of cDNA encoding human TCH234 (SEQ ID NO:18) protein was revealed by 5′RACE PCR cloning.
Using two primer DNAs, i.e. primer AP1 (SEQ ID NO: 20) and primer rr0 (SEQ ID NO: 21), human pancreas Marathon-Ready cDNA (Clontech) was subjected to primary PCR with Advantage 2 DNA Polymerase (Clontech) under the following conditions (1) to (3):
(1) reaction at 94° C. for 30 seconds,
(2) 35 cycles each consisting of reaction at 94° C. for 10 seconds and at 68° C. for 2 minutes, and
(3) reaction at 68° C. for 5 minutes.
Using the primary PCR product as a template, nested PCR was conducted with primer AP2 (SEQ ID NO: 22), primer rr1 (SEQ ID NO: 23) and Advantage 2 DNA Polymerase (Clontech) under the following conditions (4) to (6):
(4) reaction at 94° C. for 30 seconds,
(5) 30 cycles each consisting of reaction at 94° C. for 10 seconds and at 68° C. for 2 minutes, and
(6) reaction at 68° C. for 5 minutes.
One (1) μl each of exonuclease I and shrimp alkaline phosphatase in PCR Product Pre-Sequencing Kit (USB) were added to 5 μl of the nested PCR reaction solution and reacted at 37° C. for 15 minutes and at 85° C. for 15 minutes. The solution was reacted by using primer rr1 (SEQ ID NO: 23) and BigDye Terminator Cycle Sequencing Kit (Applied Biosystems), and the base sequence of the amplified DNA fragment was determined by DNA sequencer ABI PRISM 3100 DNA analyzer (Applied Biosystems). As a result, the base sequence represented by SEQ ID NO: 39 was obtained.
Example 4 Cloning of the 3′-Downstream Terminus of cDNA Encoding Human TCH234 (SEQ ID NO:18) ProteinThe 3′-downstream base sequence of cDNA encoding human TCH234 (SEQ ID NO:18) protein was revealed by 3′RACE PCR cloning.
Using two primer DNAs, i.e. primer AP1 (SEQ ID NO: 20) and primer ffl (SEQ ID NO: 24), human pancreas Marathon-Ready cDNA (Clontech) was subjected to primary PCR with Advantage 2 DNA Polymerase (Clontech) under the following conditions (1) to (3):
(1) reaction at 94° C. for 30 seconds,
(2) 35 cycles each consisting of reaction at 94° C. for 10 seconds and at 68° C. for 2 minutes, and
(3) reaction at 68° C. for 5 minutes.
Using the primary PCR product as a template, nested PCR was conducted with primer AP2 (SEQ ID NO: 22), primer ff2 (SEQ ID NO: 25) and Advantage 2 DNA Polymerase (Clontech) under the following conditions (4) to (6):
(4) reaction at 94° C. for 30 seconds,
(5) 30 cycles each consisting of reaction at 94° C. for 10 seconds and at 68° C. for 2 minutes, and
(6) reaction at 68° C. for 5 minutes.
One (1) μl each of exonuclease I and shrimp alkaline phosphatase in PCR Product Pre-Sequencing Kit (USB) were added to 5 μl of the nested PCR reaction solution and reacted at 37° C. for 15 minutes and at 85° C. for 15 minutes. The solution was reacted by using primer ff2 (SEQ ID NO: 25) and BigDye Terminator Cycle Sequencing Kit (Applied Biosystems), and the base sequence of the amplified DNA fragment was determined by DNA sequencer ABI PRISM 3100 DNA analyzer (Applied Biosystems). As a result, the base sequence represented by SEQ ID NO: 40 was obtained.
Example 5 Cloning of cDNA Encoding Human TCH234 (SEQ ID NO:18) ProteinUsing two primer DNAs, i.e. primer ORFF1 (SEQ ID NO: 26) and primer ORFR1 (SEQ ID NO: 27), human pancreas Marathon-Ready cDNA (Clontech) was subjected to primary PCR with pfu turbo DNA Polymerase (Stratagene) under the following conditions (1) to (3):
(1) reaction at 94° C. for 30 seconds,
(2) 35 cycles each consisting of reaction at 94° C. for 10 seconds, at 54° C. for 5 seconds and at 72° C. for 2.5 minutes, and
(3) reaction at 72° C. for 5 minutes.
Using the primary PCR product as a template, nested PCR was conducted with primer ORFF2 (SEQ ID NO: 28), primer ORFR2 (SEQ ID NO: 29) and pfu turbo DNA Polymerase (Stratagene) under the following conditions (4) to (6):
(4) reaction at 94° C. for 30 seconds,
(5) 30 cycles each consisting of reaction at 94° C. for 10 seconds, at 55° C. for 5 seconds and at 72° C. for 2.5 minutes, and
(6) reaction at 72° C. for 5 minutes.
The nested PCR reaction solution was purified by QIAquick PCR Purification Kit (Qiagen). This DNA was cloned into pCR-Blunt II-TOPO vector according to a protocol of the Zero Blunt TOPO PCR Cloning Kit (Invitrogen, Inc.). The resulting product was transformed into Escherichia coli TOP10 competent cell (Invitrogen, Inc.), and clones having the cDNA insert fragment were selected in a kanamycin-containing LB agar medium to give transformants. The respective clones were cultured overnight in a kanamycin-containing LB medium, and plasmid DNAs were prepared by QIAwell 8 Plasmid Kit (Qiagen) to give pCR-BluntII-TCH234 plasmid clones #1, #2 and #3. These were reacted with primer DNAs [primer M13F (SEQ ID NO: 30), primer M13R (SEQ ID NO: 31), primer ORFF2 (SEQ ID NO: 28), primer ORFR2 (SEQ ID NO: 29), primer TMF (SEQ ID NO: 32), primer TMR (SEQ ID NO: 33), primer F2 (SEQ ID NO: 34), primer F3 (SEQ ID NO: 35), primer R1 (SEQ ID NO: 36), primer R2 (SEQ ID NO: 37), primer ff2 (SEQ ID NO: 25)] and BigDye Terminator Cycle Sequencing Kit (Applied Biosystems), and the base sequences of the inserted cDNA fragments were determined by a DNA sequencer ABI PRISM 3100 DNA analyzer (Applied Biosystems). As a result, the acquired 3 clones contained the same DNA fragment and had a 2426-base sequence (SEQ ID NO: 41). The fragment (SEQ ID NO. 19) encoded a 798-amino acid sequence (SEQ ID NO. 18), and the protein comprising the amino acid sequence represented by SEQ ID NO. 18 was designated human TCH234 protein.
A transformant comprising the cDNA fragment was designated Escherichia coli TOP10/pCR-BluntII-TCH234.
When homology with OWL was examined using Blast P [Nucleic Acids Res., 25, 3389, 1997], the cDNA was revealed to be a novel gene belonging to Na+/H+ exchange transporter (
Human TCH234 exhibited 53% homology at the amino acid level with Na+/H+ exchange transporter NHE2 [Genomics, 30, 25, 1995] and 84% homology at the amino acid level with rat NHE4 (J. Biol. Chem., 267, 9331, 1992), and the protein was estimated to have a 13-times transmembrane structure.
Example 6 Analysis of Distribution of Human TCH234 (SEQ ID NO:18) Gene Product in TissuesUsing 2 primer DNAs, i.e. primer TMF (SEQ ID NO: 32) and primer TMR (SEQ ID NO: 33), designed from the sequence of human TCH234 (SEQ ID NO:18), and TaqMan probe P1 (SEQ ID NO: 38), the expression level of human TCH234 (SEQ ID NO:18) by cDNA (Human MTC panels I and II: Clontech) in each human tissue (heart, brain, placenta, lung, liver, skeletal muscle, kidney, pancreas, spleen, thymus, prostate, testis, ovary, small intestine, colon, peripheral blood leukocyte) was measured by TaqMan PCR. The reaction involved a reaction at 50° C. for 2 minutes and at 95° C. for 10 minutes and 40 cycles each consisting of a reaction at 95° C. for 15 seconds and at 60° C. for 1 minute by using TaqMan Universal PCR Master Mix (Applied Biosystems) in ABI PRISM 7900 sequence detection system (Applied Biosystems), and simultaneously detection was carried out.
The results are shown in
Using two primer DNAs, i.e. primer A3 (SEQ ID NO: 44) and primer OB3 (SEQ ID NO: 45), human testis Marathon-Ready cDNA (Clontech) was subjected to primary PCR with Pyrobest DNA Polymerase (Takara Shuzo Co., Ltd.) under the following conditions (1) to (3):
(1) reaction at 94° C. for 2 minutes,
(2) 35 cycles each consisting of reaction at 98° C. for 10 seconds, at 68° C. for 30 seconds and at 72° C. for 7 minutes, and
(3) reaction at 72° C. for 10 minutes.
The amplified product was cloned with the Zero Blunt TOPO Cloning Kit (Invitrogen, Inc.) to give plasmid pCR-BluntII-TCH212.
This product was reacted with primer DNAs [primer SP6 (SEQ ID NO: 46), primer T7 (SEQ ID NO: 47), primer A2 (SEQ ID NO: 48), primer B1 (SEQ ID NO: 49), primer B2 (SEQ ID NO: 50), primer F1 (SEQ ID NO: 51), primer F2 (SEQ ID NO: 52), primer F3 (SEQ ID NO: 53), primer F4 (SEQ ID NO: 54), primer F5 (SEQ ID NO: 55), primer R1 (SEQ ID NO: 56), primer R2 (SEQ ID NO: 57), primer R3 (SEQ ID NO: 58), primer R4 (SEQ ID NO: 59)] and BigDye Terminator Cycle Sequencing Kit (Applied Biosystems), and the base sequence of the inserted cDNA fragment was determined by DNA sequencer ABI PRISM 3100 DNA analyzer (Applied Biosystems). The acquired clone had a 3643-base sequence (SEQ ID NO: 60). The cDNA fragment (SEQ ID NO: 43) coded for a 1148-amino acid sequence (SEQ ID NO: 42), and the protein having the amino acid sequence was designated human TCH212 protein.
Base substitution was recognized at one site (position 1592 in the base sequence of SEQ ID NO: 60) in the acquired clone (designated clone #2). This base substitution C1592T was not accompanied by amino acid substitution and it is considered that the substitution is derived from single nucleotide polymorphisms (SNPs). The base sequence of the full-length cDNA possessed by this clone is shown in SEQ ID NO: 61, and the base sequence of ORF in this base sequence is shown in SEQ ID NO: 62.
A transformant having a plasmid comprising cDNA comprising the base sequence represented by SEQ ID NO: 60 was designated Escherichia coli JM109/pCR-BluntII-TCH212.
When homology with owl was examined using Blast P [Nucleic Acids Res., 25, 3389, 1997], the cDNA encoding human TCH212 (SEQ ID NO:42) was revealed to be a novel gene belonging to P-type ATPase family (
Using two primer DNAs, i.e. primer TF (SEQ ID NO: 63) primer TR (SEQ ID NO: 64), designed from the sequence of human TCH212 (SEQ ID NO:42), and TaqMan probe T1 (SEQ ID NO: 65), the expression level of human TCH212 (SEQ ID NO:42) in each human tissue was measured by TaqMan PCR. The reaction involved a reaction at 50° C. for 2 minutes and at 95° C. for 10 minutes and 40 cycles each consisting of a reaction at 95° C. for 15 seconds and at 60° C. for 1 minute by using TaqMan Universal PCR Master Mix (Applied Biosystems) in ABI PRISM 7900 sequence detection system (Applied Biosystems), and simultaneously detection was carried out. The cDNA in each kind of tissue used in measurement is shown in Table 2.
The results are shown in
In human MTC panels I and II, the human TCH212 (SEQ ID NO:42) gene product (mRNA) was expressed at a certain degree in the brain and strongly expressed in the pancreas and testis.
In human fetal MTC panel, certain expression was observed in the fetal kidney, and strong expression was observed in the fetal brain.
In human tumor MTC panel, slight expression was observed in the colon cancer (GI-112).
Example 9 Cloning of the 5′-Upstream Terminus of cDNA Encoding Human TCH200 (SEQ ID NO:66) ProteinThe 5′-upstream base sequence of cDNA encoding human TCH200 (SEQ ID NO:66) protein was revealed by 5′RACE PCR cloning.
Using human small intestine Marathon-Ready cDNA (Clontech) as a template, PCR reaction was carried out with primer AP1 (SEQ ID NO: 68) and primer R1 (SEQ ID NO: 69), and by using this PCR reaction solution as a template, PCR reaction was carried out with primer AP2 (SEQ ID NO: 70) and primer rr2 (SEQ ID NO: 71). The composition of the PCR reaction solution and reaction conditions are shown below. A reaction solution of 2.5 μl of human small intestine Marathon-Ready cDNA, 5 μM primer AP1, 5 μM primer R1, 0.4 mM dNTPs and 0.5 μl Advantage2 Polymerase mix (Clontech) was adjusted to 25 μl with a buffer attached to Advantage2 Polymerase mix (Clontech), and then heated at 94° C. for 30 seconds and subjected to 35 cycles of reaction each at 94° C. for 5 seconds and at 68° C. for 4 minutes in thermal cycler 9700 (Applied Biosystems). Then, a mixture consisting of 2.5 μl solution obtained by diluting the above PCR reaction solution (reacted with AP1/R1) 50-fold with tricine-EDTA buffer, 5 μM primer AP2, 5 μM primer rr2, 0.4 mM dNTPs and 0.5 μl Advantage2 Polymerase mix (Clontech) was adjusted to 25 μl with a buffer attached to Advantage2 Polymerase mix (Clontech), and then heated at 94° C. for 30 seconds and subjected to 30 cycles of reaction each at 94° C. for 5 seconds and at 68° C. for 4 minutes in thermal cycler 9700 (Applied Biosystems). The amplified DNA was separated by 1.5% agarose gel electrophoresis, and DNA of about 700-base in length was cut off with a razor, and then the DNA was recovered with QIAquick Gel Extraction Kit (Qiagen). This DNA was cloned into PCR2.1-TOPO vector according to the protocol of TOPO TA Cloning Kit (Invitrogen, Inc.). The product was transformed into Escherichia coli TOP10 competent cell (Invitrogen, Inc.), and clones having the cDNA insert fragment were selected in an ampicillin-containing LB agar medium to give transformants. The respective clones were cultured overnight in an ampicillin-containing LB medium, and the plasmid DNA was prepared by QIAwell 8 Plasmid Kit (Qiagen). The plasmid DNA was reacted with primer DNAs [pritner M13F (SEQ ID NO: 72), primer M13R (SEQ ID NO: 73), primer rr2 (SEQ ID NO: 71)] and BigDye Terminator Cycle Sequencing Kit (Applied Biosystems), and the base sequence of the inserted cDNA fragment was determined by DNA sequencer ABI PRISM 3100 DNA analyzer (Applied Biosystems). As a result, the base sequence shown in SEQ ID NO: 97 was obtained.
Then, primer rr4 (SEQ ID NO: 74) and primer rr6 (SEQ ID NO: 75) were designed on the basis of the base sequence shown in SEQ ID NO: 97. To obtain further upstream base sequence, PCR reaction with primer AP1 (SEQ ID NO: 68) and primer rr4 (SEQ ID NO: 74) was conducted, and using this PCR reaction solution as a template, PCR reaction was conducted with primer AP2 (SEQ ID NO: 70) and primer rr6 (SEQ ID NO: 75). The composition of the PCR reaction solution and reaction conditions are shown below. A reaction solution of 2.5 μl of human small intestine Marathon-Ready cDNA, 5 μM primer AP1, 5 μM primer rr4, 0.4 mM dNTPs and 0.5 μl Advantage2 Polymerase mix (Clontech) was adjusted to 25 μl with a buffer attached to Advantage2 Polymerase mix (Clontech), and then heated at 94° C. for 30 seconds and subjected to 35 cycles of reaction each at 94° C. for 5 seconds and at 68° C. for 1.5 minutes in thermal cycler 9700 (Applied Biosystems). Then, a mixture consisting of 2.5 μl solution obtained by diluting the above PCR reaction solution (reacted with AP1/rr4) 50-fold with tricine-EDTA buffer, 0.5 μM primer AP2, 0.5 μM primer rr6, 0.4 mM dNTPs and 0.5 μl Advantage2 Polymerase mix (Clontech) was adjusted to 25 μl with a buffer attached to Advantage2 Polymerase mix (Clontech), and then heated at 94° C. for 30 seconds and subjected to 30 cycles of reaction each at 94° C. for 5 seconds and at 68° C. for 1.5 minutes in thermal cycler 9700 (Applied Biosystems). The amplified DNA of about 280-base in length was confirmed by 1.5% agarose gel electrophoresis, and 1 μl each of exonuclease I and shrimp alkaline phosphatase in PCR Product Pre-Sequencing Kit (USB) were added to 5 μl of the PCR reaction solution (reacted with AP2/rr6) and reacted at 37° C. for 15 minutes and at 85° C. for 15 minutes. This reaction solution was diluted 3-fold with ultrapure water, and reacted with primer rr6 (SEQ ID NO: 75) and BigDye Terminator Cycle Sequencing Kit (Applied Biosystems), and the base sequence of the amplified DNA fragment was determined by DNA sequencer ABI PRISM 3100 DNA analyzer (Applied Biosystems). As a result, the base sequence shown in SEQ ID NO: 98 was obtained.
Example 10 Cloning of the 3′-Downstream Terminus of cDNA Encoding Human TCH200 (SEQ ID NO:66) ProteinFor cloning of the 3′-downstream terminus, PCR reaction was carried out using human small intestine Marathon-Ready cDNA (Clontech) as a template with primer API (SEQ ID NO: 68) and primer r1 (SEQ ID NO: 76), and by using this PCR reaction solution as a template, PCR reaction was carried out with primer AP2 (SEQ ID NO: 70) and primer r2 (SEQ ID NO: 77). The composition of the PCR reaction solution and reaction conditions are shown below. A reaction solution of 2.5 μl of human small intestine Marathon-Ready cDNA, 5 μM primerAPI, 5 μM primer r1, 0.4 mM dNTPs and 0.5 μl Advantage2 Polymerase mix (Clontech) was adjusted to 25 μl with a buffer attached to Advantage2 Polymerase mix (Clontech), and then heated at 94° C. for 30 seconds and subjected to 35 cycles of reaction each at 94° C. for 5 seconds and at 68° C. for 4 minutes in thermal cycler 9700 (Applied Biosystems). Then, a mixture consisting of 2.5 μl solution obtained by diluting the above PCR reaction solution (reacted with API/r1) 50-fold with tricine-EDTA buffer, 5 μM primer AP2, 5 μM primer r2, 0.4 mM dNTPs and 0.5 μl Advantage2 Polymerase mix (Clontech) was adjusted to 25 μl with a buffer attached to Advantage2 Polymerase mix (Clontech), and then heated at 94° C. for 30 seconds and subjected to 30 cycles of reaction each at 94° C. for 5 seconds and at 68° C. for 4 minutes in thermal cycler 9700 (Applied Biosystems). The amplified DNA was separated by 1.5% agarose gel electrophoresis, and DNA of about 600-base in length was cut off with a razor, and then the DNA was recovered with QIAquick Gel Extraction Kit (Qiagen). This DNA was cloned into PCR2.1-TOPO vector according to the protocol of TOPO TA Cloning Kit (Invitrogen, Inc.). The product was transformed into Escherichia coli TOP10 competent cell (Invitrogen, Inc.), and clones having the cDNA insert fragment were selected in an ampicillin-containing LB agar medium to give transformants. The respective clones were cultured overnight in an ampicillin-containing LB medium, and plasmid DNA was prepared by QIAwell 8 Plasmid Kit (Qiagen). The plasmid DNA was reacted with primer DNAs [primer M13F (SEQ ID NO: 72), primer M13R (SEQ ID NO: 73), primer r2 (SEQ ID NO: 77)] and BigDye Terminator Cycle Sequencing Kit (Applied Biosystems), and the base sequence of the inserted cDNA fragment was determined by DNA sequencer ABI PRISM 3100 DNA analyzer (Applied Biosystems). As a result, the base sequence shown in SEQ ID NO: 99 was obtained.
To further obtain the base sequence of the 3′-downstream terminus, PCR reaction was conducted with primer API (SEQ ID NO: 68) and primer f1 (SEQ ID NO: 78), and by using this PCR reaction solution as a template, PCR reaction was conducted with primer AP2 (SEQ ID NO: 70) and primer f2 (SEQ ID NO: 79). The composition of the PCR reaction solution and reaction conditions are shown below. A reaction solution consisting of 2.5 μl of human small intestine Marathon-Ready cDNA, 5 μM primer AP1, 5 μM primer f1, 0.4 mM dNTPs and 0.5 μl Advantage2 Polymerase mix (Clontech) was adjusted to 25 μl with a buffer attached to Advantage2 Polymerase mix (Clontech), and then heated at 94° C. for 30 seconds and subjected to 35 cycles of reaction each at 94° C. for 5 seconds and at 68° C. for 1.5 minutes in thermal cycler 9700 (Applied Biosystems). Then, a mixture consisting of 2.5 μl solution obtained by diluting the above PCR reaction solution (reacted with AP1/f1) 50-fold with tricine-EDTA buffer, 5 μM primer AP2, 5 μM primer f2, 0.4 mM dNTPs and 0.5 μl Advantage2 Polymerase mix (Clontech) was adjusted to 25 μl with a buffer attached to Advantage2 Polymerase mix (Clontech), and then heated at 94° C. for 30 seconds and subjected to 30 cycles of reaction each at 94° C. for 5 seconds and at 68° C. for 1.5 minutes in thermal cycler 9700 (Applied Biosystems). The amplified DNA of about 300-base in length was confirmed by 1.5% agarose gel electrophoresis, and 1 μl each of exonuclease I and shrimp alkaline phosphatase in PCR Product Pre-Sequencing Kit (USB) were added to 5 μl of the PCR reaction solution (reacted with AP2/f2) and reacted at 37° C. for 15 minutes and at 85° C. for 15 minutes. This reaction solution was diluted 3-fold with ultrapure water, and reacted with primer f2 (SEQ ID NO: 79) and BigDye Terminator Cycle Sequencing Kit (Applied Biosystems), and the base sequence of the amplified DNA fragment was determined by DNA sequencer ABI PRISM 3100 DNA analyzer (Applied Biosystems). As a result, the base sequence shown in SEQ ID NO. 100 was obtained.
Then, primer f4 (SEQ ID NO: 80) was designed on the basis of the base sequence shown in SEQ ID NO. 100. To obtain further downstream base sequence, first PCR reaction was carried out with primer API (SEQ ID NO: 68) and primer f2 (SEQ ID NO: 79), and by using this PCR reaction solution as a template, second PCR reaction was conducted with primer AP2 (SEQ ID NO: 70) and primer f4 (SEQ ID NO: 80). The composition of the PCR reaction solution and reaction conditions are shown below. A reaction solution consisting of 2.5 μl human testis Marathon-Ready cDNA, 5 μM primer API, 5 μM primer f2, 0.4 mM dNTPs and 0.5 μl Advantage2 Polymerase mix (Clontech) was adjusted to 25 μl with a buffer attached to Advantage2 Polymerase mix (Clontech), and then heated at 94° C. for 30 seconds and subjected to 35 cycles of reaction each at 94° C. for 5 seconds and at 68° C. for 1.5 minutes in thermal cycler 9700 (Applied Biosystems). Then, a mixture consisting of 2.5 μl solution obtained by diluting the above PCR reaction solution (reacted with AP1/f2) 50-fold with tricine-EDTA buffer, 5 μM primer AP2, 5 μM primer f4, 0.4 mM dNTPs and 0.5 μl Advantage2 Polymerase mix (Clontech) was adjusted to 25 μl with a buffer attached to Advantage2 Polymerase mix (Clontech), and then heated at 94° C. for 30 seconds and subjected to 30 cycles of reaction each at 94° C. for 5 seconds and at 68° C. for 1.5 minutes in thermal cycler 9700 (Applied Biosystems). The amplified DNA of about 150-base in length was confirmed by 1.5% agarose gel electrophoresis, and 1 μl each of exonuclease I and shrimp alkaline phosphatase in PCR Product Pre-Sequencing Kit (USB) were added to 5 μl of the PCR reaction solution (reacted with AP2/f4) and reacted at 37° C. for 15 minutes and at 85° C. for 15 minutes. This reaction solution was diluted 3-fold with ultrapure water, and reacted with primer DNAs [primer AP2 (SEQ ID NO: 70) and primer f4 (SEQ ID NO: 80)] and BigDye Terminator Cycle Sequencing Kit (Applied Biosystems), and the base sequence of the amplified DNA fragment was determined by DNA sequencer ABI PRISM 3100 DNA analyzer (Applied Biosystems). As a result, the base sequence shown in SEQ ID NO. 101 was obtained.
Example 11 Cloning of cDNA Encoding Human TCH200 (SEQ ID NO:66) ProteinCloning of cDNA encoding human TCH200 (SEQ ID NO:66) protein was conducted by nested PCR.
For cloning of cDNA encoding human TCH200 (SEQ ID NO:66) protein, primer F0 (SEQ ID NO: 81), primer R7 (SEQ ID NO: 82), primer F00 (SEQ ID NO: 83) and primer R00 (SEQ ID NO: 84) were designed on the basis of the base sequences (SEQ ID NOS: 97, 98, 99, 100 and 101) obtained in Examples 1 and 2. First PCR reaction was carried out by using human small intestine Marathon-Ready cDNA (Clontech) as a template with primer F0 and primer R7. Using this PCR reaction solution as a template, second PCR reaction was conducted with primer F00 and primer R00. The composition of the PCR reaction solution and reaction conditions are shown below. A reaction solution consisting of 2.0 μl human small intestine Marathon-Ready cDNA, 12.5 μM primer F0, 12.5 μM primer R7, 0.4 mM dNTPs and 0.5 μl pfu turbo DNA Polymerase (Stratagene) was adjusted to 20 μl with a buffer attached to Advantage2 Polymerase mix (Clontech), and then heated at 94° C. for 30 seconds and subjected to 35 cycles of reaction each at 94° C. for 10 seconds, at 56° C. for 5 seconds and at 72° C. for 2.5 minutes in thermal cycler 9700 (Applied Biosystems). Then, a mixture consisting of 1 μl of this PCR reaction solution (reacted with R0/R7), 12.5 μM primer F00, 12.5 μM primer R00, 0.4 mM dNTPs and 0.5 μl Advantage2 Polymerase mix (Clontech) was adjusted to 20 μl with a buffer attached to Advantage2 Polymerase mix (Clontech), and then heated at 94° C. for 30 seconds and subjected to 30 cycles of reaction each at 94° C. for 10 seconds, 56° C. for 5 seconds and at 72° C. for 2.5 minutes in thermal cycler 9700 (Applied Biosystems). The amplified DNA was separated by 1.5% agarose gel electrophoresis, and DNA of about 2376-base in length was cut off with a razor, and then the DNA was recovered with QIAquick Gel Extraction Kit (Qiagen). This DNA was cloned into pCR-Blunt II-TOPO vector according to the protocol of the Zero Blunt TOPO PCR Cloning Kit (Invitrogen, Inc.). The product was transformed into Escherichia coli TOP10 competent cell (Invitrogen, Inc.), and clones having the cDNA insert fragment were selected in a kanamycin-containing LB agar medium to give transformants. The respective clones were cultured overnight in a kanamycin-containing LB medium, and plasmid DNAs were prepared by QIAwell 8 Plasmid Kit (Qiagen) to give pCR-BluntII-TCH200 plasmid clones #1, #2 and #3. These were reacted with primer DNAs [primer M13F (SEQ ID NO: 72), primer M13R (SEQ ID NO: 73), primer F00 (SEQ ID NO: 83), primer R00 (SEQ ID NO: 84), primer F1 (SEQ ID NO: 85), primer F2 (SEQ ID NO: 86), primer F5 (SEQ ID NO: 87), primer F7 (SEQ ID NO: 88), primer R1 (SEQ ID NO: 69), primer ff3 (SEQ ID NO: 89), primer ff4 (SEQ ID NO: 90), primer f2 (SEQ ID NO: 80), primer B3 (SEQ ID NO: 91), primer rr1 (SEQ ID NO: 92), primer rr2 (SEQ ID NO: 71) and primer rr3 (SEQ ID NO: 93)] and BigDye Terminator Cycle Sequencing Kit (Applied Biosystems), and the base sequences of the inserted cDNA fragments were determined by DNA sequencer ABI PRISM 3100 DNA analyzer (Applied Biosystems). As a result, the obtained 2 clones had the same DNA fragment and had a 2376-base sequence (SEQ ID NO. 102). The fragment (SEQ ID NO: 97) coded for a 791-amino acid sequence (SEQ ID NO: 66), and the protein comprising the amino acid sequence represented by SEQ ID NO: 66 was designated human TCH200 (SEQ ID NO:66) protein.
A transformant having the plasmid comprising the cDNA fragment (SEQ ID NO. 102) was designated Escherichia coli TOP10/pCR-BluntII-TCH200.
The obtained sequence (SEQ ID NO. 102) was examined for homology in a public genome database, and as a result, base substitution was recognized at one site (substitution of C with A at position 558 in the base sequence represented by SEQ ID NO: 67) (SEQ ID NO. 103). This base substitution C558A was not accompanied by amino acid substitution, and it is considered that the substitution is derived from single nucleotide polymorphisms (SNPs).
When homology with GENEMBL was conducted by using Blast P [Nucleic Acids Res., 25, 3389, 1997], the cDNA comprising the base sequence represented by SEQ ID NO: 67 was revealed to be a novel gene belonging to human vanilloid receptor (
By using two primer DNAs, i.e. primer TMF (SEQ ID NO: 94) and primer TMR (SEQ ID NO: 95), designed from the sequence of human TCH200 (SEQ ID NO:66), and TaqMan probe P1 (SEQ ID NO: 96), the expression level of human TCH200 (SEQ ID NO:66) by cDNA (human MTC panels I and II: Clontech) in each human tissue (heart, brain, placenta, lung, liver, skeletal muscle, kidney, pancreas, spleen, thymus, prostate, testis, ovary, small intestine, large intestine, peripheral blood leukocyte) was measured by TaqMan PCR. The reaction involved a reaction at 50° C. for 2 minutes and at 95° C. for 10 minutes and 40 cycles each consisting of a reaction at 95° C. for 15 seconds and at 60° C. for 1 minute by using TaqMan Universal PCR Master Mix (Applied Biosystems) in ABI PRISM 7900 sequence detection system (Applied Biosystems), and simultaneously detection was carried out.
The results are shown in
Using two primer DNAs, i.e. primer m230A1 (SEQ ID NO. 106) and primer m230B2 (SEQ ID NO. 107), mouse testis Marathon-Ready cDNA (Clontech) was subjected to primary PCR with Pyrobest DNA Polymerase (Takara Bio) under the following conditions (1) to (3):
(1) reaction at 94° C. for 2 minutes,
(2) 30 cycles each consisting of reaction at 98° C. for 10 seconds and at 72° C. for 2 minutes, and
(3) reaction at 72° C. for 10 minutes.
The resulting amplification product was cloned by Zero Blunt TOPO Cloning kit (Invitrogen, Inc.) to give plasmid pCR-BluntII-mTCH230.
The product was reacted with primer DNAs [primer SP6 (SEQ ID NO: 7), primer T7 (SEQ ID NO: 8), primer m230F1 (SEQ ID NO. 108), primer m230F2 (SEQ ID NO. 109), primer m230R1 (SEQ ID NO. 110) and primer m230R2 (SEQ ID NO. 111)] and BigDye Terminator Cycle Sequencing Kit (Applied Biosystems), and the base sequence of the inserted cDNA fragment was determined by DNA sequencer ABI PRISM 3100 DNA analyzer (Applied Biosystems). As a result, the clone had a 1237-base sequence (SEQ ID NO. 112). The cDNA fragment (SEQ ID NO. 105) encoded a 373-amino acid sequence (SEQ ID NO. 104), and the protein having the amino acid sequence was designated mouse TCH230 (SEQ ID NO:112) protein.
A transformant having the plasmid comprising the cDNA fragment was designated Escherichia coli TOP10/PCR-BluntII-mTCH230.
The mouse TCH230 (SEQ ID NO:112) exhibited 74% homology at the base level and 70% homology at the amino acid level with human TCH230 (SEQ ID NO: 1), and it was revealed that mouse TCH230 (SEQ ID NO:112) is a mouse ortholog of human TCH230 (SEQ ID NO:1) (
Using two primer DNAs, i.e. primer m230TF (SEQ ID NO. 113) and primer m230TR (SEQ ID NO. 114), designed from the sequence of mouse TCH230 (SEQ ID NO:112), and TaqMan probe m230T1 (SEQ ID NO. 115), the expression level of mouse TCH230 (SEQ ID NO:112) by cDNA (mouse MTC panels I and II: Clontech) in each mouse tissue (bone marrow, eye, lymph node, smooth muscle, prostate, thymus, stomach, uterus, heart, brain, spleen, lung, liver, skeletal muscle, kidney, testis, embryo (7th day), embryo (11th day), embryo (15th day), embryo (17th day)) were measured by TaqMan PCR. The PCR reaction involved a reaction at 50° C. for 2 minutes and at 95° C. for 10 minutes and 40 cycles each consisting of a reaction at 95° C. for 15 seconds and at 60° C. for 1 minute by using TaqMan Universal PCR Master Mix (Applied Biosystems) in ABI PRISM 7900 sequence detection system (Applied Biosystems), and simultaneously detection was carried out.
The results are shown in
In mouse MTC panels I and II, the mouse TCH230 (SEQ ID NO:112) gene product (mRNA) was expressed slightly in the eye, lymph node, prostate, thymus, uterus, spleen, liver, kidney and embryo (15th day), expressed at a certain degree in the stomach, skeletal muscle, testis, embryo (7th day) and embryo (17th day), expressed strongly in the heart, and expressed most strongly in the lung.
Example 15 Analysis of Distribution of Mouse TCH230 (SEQ ID NO:112) Gene Product in Tissues of 7-Week-Old BALB/c Mouse(1) Preparation of cDNA from Each Tissue in Normal Mouse
Using ISOGEN (Nippon Gene) or RNeasy Mini Kit (Qiagen), total RNA was prepared from each kind ofussue in 7-week-old BALB/c mouse [cerebrum, cerebellum, hippocampus, medulla oblongata, spinal cord, ischiatic nerve, skin, skeletal muscle, eyeball, heart, lung, trachea, pancreas, kidney, liver, anterior stomach, pyloric stomach, duodenum, jejunoileum, caecum, colon, rectum, spleen, thymus, bone marrow, ovary, uterus, prostate, testis (ovary and uterus were collected from female mice, and other organs were from male mice, and each was collected from 1 to 10 mice)]. The prepared total RNA was subjected to reverse transcription reaction by using TaqMan Reverse Transcription Reagents (Applied Biosystems) to prepare cDNA.
(2) Analysis of Distribution of Mouse TCH230 (SEQ ID NO:112) Gene Product in TissuesThe expression level (copy number) of mouse TCH230 (SEQ ID NO:112) by cDNA in each kind of mouse tissue was measured by TaqMan PCR with two primer DNAs, i.e. primer m230TF (SEQ ID NO. 113) and primer m230TR (SEQ ID NO. 114) used in Example 14 and TaqMan probe m230T1 (SEQ ID NO. 115). The same cDNA was also measured for the expression level (copy number) of rodent glyceraldehyde-3-phosphate dehydrogenase (GAPDH) by using TaqMan rodent GAPDH control reagents (Applied Biosystems). The reaction involved a reaction at 50° C. for 2 minutes and at 95° C. for 10 minutes and 40 cycles each consisting of a reaction at 95° C. for 15 seconds and at 60° C. for 1 minute by using TaqMan Universal PCR Master Mix (Applied Biosystems) in ABI PRISM 7900 sequence detection system (Applied Biosystems), and simultaneously detection was carried out.
The results are shown in
In the tissues of 7-week-old BALB/c mice, the mouse TCH230 (SEQ ID NO:112) gene product (mRNA) was expressed slightly in the ovary, jejunoileum, caecum, colon, rectum, prostate, spleen, eyeball, pyloric stomach, pancreas and heart, expressed at a certain degree in the ischiatic nerve, trachea, testis and uterus, expressed highly in the skin and lung, and expressed at the highest degree in the anterior stomach.
Example 16 Identification of a Partial Sequence of Rat TCH230 GeneUsing two primer DNAs, i.e. primer r230OF (SEQ ID NO. 117) and primer r230OR (SEQ ID NO. 118), rat testis Marathon-Ready cDNA (Clontech) was subjected to PCR with Advantage 2 DNA Polymerase (Clontech) under the following conditions (1) to (3):
(1) reaction at 95° C. for 1 minute,
(2) 35 cycles each consisting of reaction at 95° C. for 30 seconds and at 68° C. for 3 minutes, and
(3) reaction at 68° C. for 3 minutes.
The resulting amplification product was subjected to gel electrophoresis, and a fragment of about 1.0 kb was cut off, purified by QIAquick Gel Extraction Kit (Qiagen) and reacted by using primer r230OF (SEQ ID NO. 117), primer r230OR (SEQ ID NO. 118) and BigDye Terminator Cycle Sequencing Kit (Applied Biosystems), and the base sequence of the product amplified by PCR was determined by DNA sequencer ABI PRISM 3100 DNA analyzer (Applied Biosystems). As a result, a partial sequence of rat TCH230 gene cDNA having a 1046-base sequence represented by SEQ ID NO. 116 was identified.
Example 17 (1) Preparation of cDNA from Each Tissue in Normal RatUsing RNeasy Mini Kit (Qiagen), total RNA was prepared from each kind of tissue (cerebrum, cerebellum, liver, kidney, prostate, heart, lung, duodenum, jejunoileum, colon, skin, eyeball) in 12-week-old male Wistar rats. The prepared total RNA was subjected to reverse transcription reaction with TaqMan Reverse Transcription Reagents (Applied Biosystems) to prepare cDNA.
(2) Analysis of Distribution of Rat TCH230 Gene Product in TissuesThe expression level (copy number) of rat TCH230 by cDNA in each rat tissue was measured by TaqMan PCR with two primer DNAs, i.e. primer r230TF (SEQ ID NO. 119) and primer r230TR (SEQ ID NO. 120), designed from the sequence of SEQ ID NO. 116, and TaqMan probe r230T1 (SEQ ID NO. 121). The same cDNA was also measured for the expression level (copy number) of rodent glyceraldehyde-3-phosphate dehydrogenase (GAPDH) by using TaqMan rodent GAPDH control reagents (Applied Biosystems). The PCR reaction involved a reaction at 50° C. for 2 minutes and at 95° C. for 10 minutes and 40 cycles each consisting of a reaction at 95° C. for 15 seconds and at 60° C. for 1 minute by using TaqMan Universal PCR Master Mix (Applied Biosystems) in ABI PRISM 7900 sequence detection system (Applied Biosystems), and simultaneously detection was carried out.
The results are shown in
The TCH230 gene product (mRNA) was expressed in all tissues in the 12-week-old Wistar rats, and particularly in the cerebrum, prostate, jejunoileum, colon and skin, high expression was observed, and the highest expression was observed in the lung.
Example 18 Construction of Human TCH230 (SEQ ID NO:1) Expression VectorHuman TCH230 (SEQ ID NO. 1) expression vector was constructed by the following method.
Using 10 ng of plasmid obtained in Example 1 as a template, PCR was conducted with primer 230OF2 (SEQ ID NO. 122) and primer 230OR2 (SEQ ID NO. 123) and Pyrobest DNA Polymerase (Takara Bio) under the following conditions (1) to (3). The 5′-terminal side primer 230OF2 and the 3′-terminal side primer 230OR2 were designed such that Hind III site and Xba I site were added respectively to the 5′-terminal side for cloning into a vector.
(1) reaction at 98° C. for 2 minutes,
(2) 30 cycles each consisting of reaction at 98° C. for 10 seconds, at 65° C. for 30 seconds and at 72° C. for 3.5 minutes, and
(3) reaction at 72° C. for 10 minutes.
The PCR reaction solution was subjected to gel electrophoresis, and a major band was purified. The PCR fragment thus obtained was digested with restriction enzymes Hind III and Xba I at 37° C. for 1 hour, and the reaction solution was subjected to gel electrophoresis and purified. The product was ligated to Hind III site and Xba I site of an animal cell expression vector pcDNA3.1(+) (Invitrogen, Inc.) by Takara ligation kit ver. 2 (Takara Bio). This ligation reaction solution was precipitated with ethanol and used to transform a competent cell Escherichia coli TOP10 (Invitrogen, Inc.). From a plurality of colonies thus obtained, a plasmid was prepared, and this base sequence was reacted by using primer DNAs [primer BGH RV (SEQ ID NO. 124), primer T7 (SEQ ID NO: 8), primer B1 (SEQ ID NO: 9), primer F1 (SEQ ID NO. 10)] and BigDye Terminator Cycle Sequencing Kit (Applied Biosystems), and the base sequence was confirmed by DNA sequencer ABI PRISM 3100 DNA analyzer (Applied Biosystems). The transformant having this plasmid was designated Escherichia coli TOP10/pCDNA3.1(+)-TCH230.
Example 19 Preparation of Human TCH230 (SEQ ID NO:1) Expressing CHO Cell Strain and Measurement of the Expression Level of the Introduced GeneEscherichia coli TOP10/pCDNA3.1(+)-TCH230 was cultured, and from this Escherichia coli, plasmid DNA was prepared by EndoFree Plasmid Maxi Kit (Qiagen). This plasmid DNA was introduced into CHO dhfr− cells by using FuGENE 6 Transfection Reagent (Roche) according to its attached protocol. A mixture of 2 μg of plasmid DNA and transfection reagents was added to a 6 cm Petri dish on which 3×105 CHO dhfr− cells had been plated before 24 hours. The cells were cultured for 1 day in MEMα medium (Invitrogen, Inc.) containing 10% bovine fetal serum (JRH Bioscience), and peeled off by treatment with trypsin, and the recovered cells were plated on a 96-well plate at a density of 10-50 cells/well. After 24 hours, 0.5 mg/ml geneticine (Invitrogen, Inc.) was added to the medium, and then the TCH230 expression cells were selected in a medium containing 0.5-1.0 mg/ml geneticine. 22 wells wherein one to three colonies had grownper well were cultured in a 6-well plate, and from the grown cells, total RNA was prepared by RNeasy Mini Kit or RNeasy 96 Kit (both available from Qiagen). The prepared total RNA was subjected to reverse transcription reaction by TaqMan Reverse Transcription Reagents (Applied Biosystems) to prepare cDNA. This was examined for the expression level of TCH230 by TaqMan PCR with primer TF (SEQ ID NO. 15) and primer TR (SEQ ID NO. 16) used in Example 2 and TaqMan probe T1 (SEQ ID NO. 17). The reaction involved a reaction at 50° C. for 2 minutes and at 95° C. for 10 minutes and 40 cycles each consisting of a reaction at 95° C. for 15 seconds and at 60° C. for 1 minute by using TaqMan Universal PCR Master Mix (Applied Biosystems) in ABI PRISM 7900 sequence detection system (Applied Biosystems), and simultaneously detection was carried out. As cell strains (polyclonal) highly expressing human TCH230 (SEQ ID NO:1) gene, clone Nos. 19 and 26 were selected. Each strain was inoculated into a 96-well plate at a density of 0.5 cell/well, and then cultured for 7 to 10 days in a medium containing geneticine, to give a monoclonal clone. Total RNA was prepared and the expression level of human TCH230 (SEQ ID NO:1) gene was measured by TaqMan PCR. As cell strains (monoclonal) expressing human TCH230 (SEQ ID NO:1), clone No. 19-6 were selected.
Example 20 Measurement of Incorporation of [6,7-3H(N)]-estrone sulfate and [1,2,6,7-3H(N)]-dehydroepiandrosterone sulfate into the Human TCH230 (SEQ ID NO: 1)-Expressing CHO Cell StrainIncorporation of [6,7-3H(N)]-estrone sulfate and [1,2,6,7-3H(N)]-dehydroepiandrosterone sulfate (hereinafter also referred to as [1,2,6,7-3H(N)]-DHEA-S) into the human TCH230 (SEQ ID NO:1)-expressing CHO cell strain clone No. 19-6 obtained in Example 19 was measured.
The human TCH230 (SEQ ID NO:1) expressing CHO cell strain clone No. 19-6 was inoculated at a density of 4×104 cells/well in a 96 well plate, and cultured at 37° C. for 24 hours in MEMα medium (Invitrogen, Inc.) containing 5 mM sodium butyrate. The medium was removed, and the cells were washed 3 times with 150 μL NMDG buffer (140 mM N-methyl-D(−)-glucamine, 5.4 mM KCl, 0.34 mM Na2HPO4, 0.44 mM KH2PO4, 1.26 mM CaCl2, 0.41 mM MgSO4, 0.49 mM MgCl2, 5.55 mM glucose, pH 7.4-7.6), and incubated in 150 μL NMDG buffer at 37° C. for 1 hour. The buffer was replaced with 90 μL NaCl buffer (140 mM NaCl, 5.4 mM KCl, 0.34 mM Na2HPO4, 0.44 mM KH2PO4, 1.26 mM CaCl2, 0.41 mM MgSO4, 0.49 mM MgCl2, 5.55 mM glucose, pH 7.4-7.6) or 90 μL NMDG buffer, followed by adding 10 μL of 2.5 μM estrone sulfate, ammonium salt, [6,7-3H(N)]— or 1.37 μM dehydroepiandrosterone sulfate, sodium salt, [1,2,6,7-3H(N)]— (all of which are available from Perkin-Elmer Life Science). The cells were incubated at 37° C. for 1 hour, and the buffer was removed, then washed 3 times with 200 μL PBS (Takara Bio) and lysed with 10 μL of 0.1N NaOH. 100 μL SuperMix scintillator (Perkin-Elmer Life Science) was added thereto and stirred, and the amount of [6,7-3H(N)]-estrone sulfate or [1,2,6,7-3H(N)]-DHEA-S incorporated into the cells was measured in terms of radioactivity. This measurement was carried out with 1450 MICROBETA PLUS LIQUID SCINTILLATION COUNTER (Perkin-Elmer Life Science). CHO dhfr− cells into which vector pcDNA3.1(+) had been introduced (also referred to hereinafter as Mock) was also subjected to the same procedure and measured for radioactivity.
The result of [6,7-3H(N)]-estrone sulfate is shown in
It was thereby revealed that the human TCH230 (SEQ ID NO:1) expressing CHO cells incorporate [6,7-3H(N)]-estrone sulfate and [1,2,6,7-3H(N)]-DHEA-S in the presence of 140 mM NaCl.
Example 21 Identification of a Partial Sequence of Mouse TCH234 GeneUsing two primer DNAs, i.e. primer m234-1485F (SEQ ID NO. 126) and primer m234-1801R (SEQ ID NO. 127), mouse testis Marathon-Ready cDNA (Clontech) was subjected to PCR with Advantage 2 DNA Polymerase (Clontech) under the following conditions (1) to (5):
(1) reaction at 94° C. for 30 seconds,
(2) 35 cycles each consisting of reaction at 94° C. for 10 seconds, at 62° C. for 10 seconds and at 68° C. for 30 seconds, and
(3) reaction at 68° C. for 3 minutes.
The resulting amplification product was subjected to gel electrophoresis, and a fragment of about 0.3 kb was cut off, purified by QIAquick Gel Extraction Kit (Qiagen) and reacted by using primer m234-1485F (SEQ ID NO. 126), primer m234-1801R (SEQ ID NO. 127) and BigDye Terminator Cycle Sequencing Kit (Applied Biosystems), and the base sequence of the product amplified by PCR was determined by DNA sequencer ABI PRISM 3100 DNA analyzer (Applied Biosystems).
As a result, a partial sequence of mouse TCH234 gene cDNA having a 317-base sequence represented by SEQ ID NO. 125 was identified.
Example 22 Analysis of Distribution of Mouse TCH234 Gene Product in TissuesThe expression level (copy number) of mouse TCH234 by the cDNA prepared in Example 15 in each mouse tissue was measured by TaqMan PCR with two primer DNAs, i.e. primer m234-TMF (SEQ ID NO. 128) and primer m234-TMR (SEQ ID NO. 129), designed from the base sequence represented by SEQ ID NO. 125, and TaqMan probe m234T1 (SEQ ID NO. 130). The same cDNA was also measured for the expression level (copy number) of rodent glyceraldehyde-3-phosphate dehydrogenase (GAPDH) by using TaqMan rodent GAPDH control reagents (Applied Biosystems). The reaction involved a reaction at 50° C. for 2 minutes and at 95° C. for 10 minutes and 40 cycles each consisting of a reaction at 95° C. for 15 seconds and at 60° C. for 1 minute by using TaqMan Universal PCR Master Mix (Applied Biosystems) in ABI PRISM 7900 sequence detection system (Applied Biosystems), and simultaneously detection was carried out.
The results are shown in
In each kind of tissue of 7-week-old BALB/c mouse, the mouse TCH234 gene product (mRNA) was expressed slightly in the ischiatic nerve, ovary, skin, jejunoileum, colon, anterior stomach, prostate, kidney, uterus, thymus and cerebrum, expressed at a certain degree in the lung, hippocampus, duodenum, testis and trachea, and expressed particularly highly in the pyloric stomach.
Example 23 Identification of a Partial Sequence of Rat TCH234 GeneUsing two primer DNAs, i.e. primer r234-815F (SEQ ID NO. 132) and primer r234-1177R (SEQ ID NO. 133), rat kidney Marathon-Ready cDNA (Clontech) was subjected to PCR with Advantage 2 DNA Polymerase (Clontech) under the following conditions (1) to (3):
(1) reaction at 94° C. for 30 seconds,
(2) 35 cycles each consisting of reaction at 94° C. for 10 seconds, at 62° C. for 10 seconds and at 68° C. for 30 seconds, and
(3) reaction at 68° C. for 3 minutes.
The resulting amplification product was subjected to gel electrophoresis, and a fragment of about 0.35 kb was cut off, purified by QIAquick Gel Extraction Kit (Qiagen) and reacted by using primer r234-815F (SEQ ID NO. 132), primer m234-1177R (SEQ ID NO. 133) and BigDye Terminator Cycle Sequencing Kit (Applied Biosystems), and the base sequence of the product amplified by PCR was determined by DNA sequencer ABI PRISM 3100 DNA analyzer (Applied Biosystems). As a result, a partial sequence of rat TCH234 gene cDNA having a 363-base sequence represented by SEQ ID NO. 131 was identified.
Example 24 Analysis of Distribution of Rat TCH234 Gene Product in TissuesThe expression level (copy number) of rat TCH234 by the cDNA prepared in Example 17 in each rat tissue was measured by TaqMan PCR with two primer DNAs, i.e. primer r234-TMF (SEQ ID NO. 134) and primer r234-TMR (SEQ ID NO. 135), designed from the base sequence represented by SEQ ID NO. 131, and TaqMan probe r234-P1 (SEQ ID NO. 136). The same cDNA was also measured for the expression level (copy number) of rodent glyceraldehyde-3-phosphate dehydrogenase (GAPDH) by using TaqMan rodent GAPDH control reagents (Applied Biosystems). The PCR reaction involved a reaction at 50° C. for 2 minutes and at 95° C. for 10 minutes and 40 cycles each consisting of a reaction at 95° C. for 15 seconds and at 60° C. for 1 minute by using TaqMan Universal PCR Master Mix (Applied Biosystems) in ABI PRISM 7900 sequence detection system (Applied Biosystems), and simultaneously detection was carried out.
The results are shown in
In each kind of tissue of 12-week-old Wistar rat, the rat TCH234 gene product (mRNA) was expressed at a certain degree in the cerebellum, liver, jejunoileum and colon, expressed highly in the cerebrum, duodenum and eye and expressed most highly in the kidney.
Example 25 Construction of Human TCH234 (SEQ ID NO:18) Expression VectorHuman TCH234 (SEQ ID NO. 18) expression vector was constructed by the following method.
Using 10 ng plasmid obtained in Example 5 as a template, PCR was conducted with primer 234OF (SEQ ID NO. 137) and primer 2340R (SEQ ID NO. 138) and Pyrobest DNA Polymerase (Takara Bio) under the following conditions (1) to (3). The 5′-terminal side primer 234OF and the 3′-terminal side primer 234OR were designed such that Hind III site and Xba I site were added respectively to the 5′-terminal side for cloning into a vector.
(1) reaction at 94° C. for 1 minute,
(2) 25 cycles each consisting of reaction at 94° C. for 30 seconds, at 55° C. for 30 seconds and at 72° C. for 3 minutes, and
(3) reaction at 72° C. for 5 minutes.
The PCR reaction solution was subjected to gel electrophoresis, and a major band was purified. The PCR fragment thus obtained was digested with restriction enzymes Hind III and Xba I at 37° C. for 1 hour, and the reaction solution was subjected to gel electrophoresis and purified. The product was ligated to Hind III site and Xba I site of an animal cell expression vector pcDNA3.1(+) (Invitrogen, Inc.) by using Takara ligation kit ver. 2 (Takara Bio). This ligation reaction solution was used to transform a competent cell Escherichia coli JM109 (Takara Bio).
From a plurality of colonies thus obtained, a plasmid was prepared, and this base sequence was reacted by using primer DNAs [primer BGH RV (SEQ ID NO. 124), primer T7 (SEQ ID NO: 8), primer F3 (SEQ ID NO: 35), primer R2 (SEQ ID NO: 37), primer ff2 (SEQ ID NO: 25), primer 234F21 (SEQ ID NO. 139), primer 234F22 (SEQ ID NO. 140), primer 234F23 (SEQ ID NO. 141), primer 234R24 (SEQ ID NO. 142)] and BigDye Terminator Cycle Sequencing Kit (Applied Biosystems), and the base sequence was confirmed by DNA sequencer ABI PRISM 3100 DNA analyzer (Applied Biosystems). The transformant having this plasmid was designated Escherichia coli JM109/pCDNA3.1(+)-TCH234.
Example 26 Preparation of Human TCH234 (SEQ ID NO:18)-Expressing CHO Cell StrainThe Escherichia coli JM109/pCDNA3.1 (+)-TCH234 was cultured, and from this Escherichia coli, plasmid DNA was prepared by EndoFree Plasmid Maxi Kit (Qiagen). This plasmid DNA was introduced into CHO dhfr− cells by using FuGENE 6 Transfection Reagent (Roche) according to its attached protocol. A mixture of 2 μg of plasmid DNA and transfection reagents was added to a Petri dish of 6 cm in diameter on which 3×105 CHO dhfr− cells had been plated before 24 hours. The cells were cultured for one (1) day in MEMα medium (Invitrogen, Inc.) containing 10% bovine fetal serum (JRH Bioscience), and peeled off by treatment with trypsin, and the recovered cells were suitably diluted and plated on a 10 cm Petri dish. After 24 hours, 0.5 mg/ml geneticine (Invitrogen, Inc.) was added to the medium, and for 10 days thereafter, human TCH234 (SEQ ID NO:18)-expressing cells were selected in MEM medium containing 0.5-1.0 mg/ml geneticine. 104 grown colonies of monoclonal human TCH234 (SEQ ID NO:18)-expressing cells were selected in the geneticine-containing selective medium.
Example 27 Measurement of the Expression Level of the Introduced Gene in the Human TCH234 (SEQ ID NO:18) Expressing CHO Cell Strain by TaqMan PCRThe human TCH234 (SEQ ID NO:18) expressing CHO cell strain prepared in Example 26 was cultured in a 96-well plate, and from the grown cells, total RNA was prepared by using SV 96 Total RNA Isolation System (Promega). The prepared total RNA was subjected to reverse transcription reaction by TaqMan Reverse Transcription Reagents (Applied Biosystems) to prepare cDNA. This was measured for the expression level of human TCH234 (SEQ ID NO:18) by TaqMan PCR with primer TMF (SEQ ID NO: 32) and primer TMR (SEQ ID NO: 33), used in Example 6, and TaqMan probe P1 (SEQ ID NO: 38). The PCR reaction involved a reaction at 50° C. for 2 minutes and at 95° C. for 10 minutes and 40 cycles each consisting of a reaction at 95° C. for 15 seconds and at 60° C. for 1 minute by using TaqMan Universal PCR Master Mix (Applied Biosystems) in ABI PRISM 7900 sequence detection system (Applied Biosystems), and simultaneously detection was carried out. As a cell strain highly expressing human TCH234 (SEQ ID NO:18) gene, clone No. 104 was selected.
Example 28 Analysis of Tissue Distribution of Human TCH234 (SEQ ID NO:18) Gene Product in Human Digestive TissuesThe expression level (copy number) of human TCH234 (SEQ ID NO:18) by cDNA (human digestive system MTC panel; Clontech) in each human digestive tract tissue (liver, esophagus, stomach, duodenum, jejunoileum, ileocecum, caecum, ascending colon, transverse colon, descending colon, rectum) was measured by TaqMan PCR with primer TMF (SEQ ID NO: 32) and primer TMR (SEQ ID NO: 33), used in Example 6, and TaqMan probe P1 (SEQ ID NO: 38). The same cDNA was also measured for the expression level (copy number) of rodent glyceraldehyde-3-phosphate dehydrogenase (GAPDH) by using TaqMan rodent GAPDH control reagents (Applied Biosystems). The PCR reaction involved a reaction at 50° C. for 2 minutes and at 95° C. for 10 minutes and 40 cycles each consisting of a reaction at 95° C. for 15 seconds and at 60° C. for 1 minute by using TaqMan Universal PCR Master Mix (Applied Biosystems) in ABI PRISM 7900 sequence detection system (Applied Biosystems), and simultaneously detection was carried out.
The results are shown in
In the digestive tract tissues, the human TCH234 (SEQ ID NO:18) gene product (mRNA) was expressed slightly in the ileocecum, expressed highly in the duodenum and expressed most highly in the stomach.
Example 29 Identification of a Partial Sequence of Mouse TCH212 (SEQ ID NO:143) GeneUsing two primer DNAs, i.e. primer m212A1 (SEQ ID NO. 144) and primer m212B1 (SEQ ID NO. 145), mouse testis Marathon-Ready cDNA (Clontech) was subjected to PCR with Advantage 2 DNA Polymerase (Clontech) under the following conditions (1) to (3):
(1) reaction at 95° C. for 1 minute,
(2) 35 cycles each consisting of reaction at 95° C. for 30 seconds and at 68° C. for 3 minutes, and
(3) reaction at 68° C. for 3 minutes.
The resulting amplification product was subjected to gel electrophoresis, and a fragment of about 0.8 kb was cut off, purified by QIAquick Gel Extraction Kit (Qiagen) and reacted by using primer m212A1 (SEQ ID NO. 144), primer m212B1 (SEQ ID NO. 145) and BigDye Terminator Cycle Sequencing Kit (Applied Biosystems), and the base sequence of the product amplified by PCR was determined by DNA sequencer ABI PRISM 3100 DNA analyzer (Applied Biosystems). As a result, a partial sequence of mouse TCH212 gene cDNA having a 680-base sequence represented by SEQ ID NO. 143 was identified.
Example 30 Analysis of Distribution of Mouse TCH212 (SEQ ID NO:143) Gene Product in TissuesUsing two primer DNAs, i.e. primer m212TF (SEQ ID NO: 146) and primer m212TR (SEQ ID NO: 147), designed from the base sequence represented by SEQ ID NO: 143, and TaqMan probe m212T1 (SEQ ID NO: 148), the expression level (copy number) of mouse TCH212 (SEQ ID NO:143) by the cDNA prepared in Example 15 in each mouse tissue was measured by TaqMan PCR. The same cDNA was also measured for the expression level (copy number) of rodent glyceraldehyde-3-phosphate dehydrogenase (GAPDH) by using TaqMan rodent GAPDH control reagents (Applied Biosystems). The reaction involved a reaction at 50° C. for 2 minutes and at 95° C. for 10 minutes and 40 cycles each consisting of a reaction at 95° C. for 15 seconds and at 60° C. for 1 minute by using TaqMan Universal PCR Master Mix (Applied Biosystems) in ABI PRISM 7900 sequence detection system (Applied Biosystems), and simultaneously detection was carried out.
The results are shown in
In each kind of tissue in 7-week-old BALB/c mouse, the mouse TCH212 (SEQ ID NO:143) gene product (mRNA) was expressed slightly in the trachea, anterior stomach, prostate, duodenum, uterus, spleen, eyeball, thymus, pyloric stomach, heart, lung, hippocampus and bone marrow, expressed at a certain degree in the ovary, skin, jejunoileum, caecum, rectum, pancreas, cerebellum and cerebrum, expressed highly in the ischiatic nerve, colon, medulla oblongata and spinal cord and expressed most highly in the testis.
Example 31 Identification of a Partial Sequence of Rat TCH212 GeneUsing two primer DNAs, i.e. primer m212A1 (SEQ ID NO. 144) and primer m212B1 (SEQ ID NO. 145) used in Example 29, rat testis Marathon-Ready cDNA (Clontech) was subjected to PCR with Advantage 2 DNA Polymerase (Clontech) under the following conditions (1) to (3):
(1) reaction at 95° C. for 1 minute,
(2) 35 cycles each consisting of reaction at 95° C. for 30 seconds, at 60° C. for 30 seconds and at 68° C. for 3 minutes, and
(3) reaction at 68° C. for 3 minutes.
The resulting amplification product was subjected to gel electrophoresis, and a fragment of about 0.8 kb was excised, purified by QIAquick Gel Extraction Kit (Qiagen) and reacted by using primer m212A1 (SEQ ID NO. 144), primer m212B1 (SEQ ID NO. 145) and BigDye Terminator Cycle Sequencing Kit (Applied Biosystems), and the base sequence of the product amplified by PCR was determined by DNA sequencer ABI PRISM 3100 DNA analyzer (Applied Biosystems). As a result, a partial sequence of rat TCH212 gene cDNA having a 771-base sequence represented by SEQ ID NO. 149 was identified.
Example 32 Analysis of Distribution of Rat TCH212 Gene Product in TissuesUsing two primer DNAs, i.e. primer r212TF (SEQ ID NO. 150) and primer r212TR (SEQ ID NO. 151), designed from the base sequence represented by SEQ ID NO: 149, and TaqMan probe r212T1 (SEQ ID NO. 152), the expression level (copy number) of rat TCH212 by the cDNA prepared in Example 17 in each rat tissue was measured by TaqMan PCR. The same cDNA was also measured for the expression level (copy number) of rodent glyceraldehyde-3-phosphate dehydrogenase (GAPDH) by using TaqMan rodent GAPDH control reagents (Applied Biosystems). The reaction involved a reaction at 50° C. for 2 minutes and at 95° C. for 10 minutes and 40 cycles each consisting of a reaction at 95° C. for 15 seconds and at 60° C. for 1 minute by using TaqMan Universal PCR Master Mix (Applied Biosystems) in ABI PRISM 7900 sequence detection system (Applied Biosystems), and simultaneously detection was carried out.
The results are shown in
In all tissues in 12-week-old Wistar rat, the rat TCH212 gene product (mRNA) was expressed; particularly in the lung, duodenum and jejunoileum, certain expression was observed, and in the cerebrum, cerebellum, prostate, colon and eyeball, high expression was observed.
Example 33 Construction of Human TCH212 (SEQ ID NO:42) Expression VectorHuman TCH212 (SEQ ID NO: 42) expression vector was constructed by the following method.
Using 10 ng of plasmid obtained in Example 7 as a template, PCR was conducted with primer 2120F (SEQ ID NO. 153) and primer 2120R (SEQ ID NO. 154) and KOD DNA Polymerase (Toyobo) under the following conditions (1) to (3). The 5′-terminal side primer 2120F and the 3′-terminal side primer 2120R were designed such that BamH I site and Not I site were added respectively to the 5′-terminal side for cloning into a vector.
(1) reaction at 94° C. for 2 minutes,
(2) 35 cycles each consisting of reaction at 94° C. for 15 seconds, at 60° C. for 30 seconds and at 68° C. for 3.5 minutes, and
(3) reaction at 68° C. for 3 minutes.
The PCR reaction solution was subjected to gel electrophoresis, and a major band was purified. The PCR fragment thus obtained was digested with restriction enzymes Bam HI and Not I at 37° C. for 1 hour, and the reaction solution was subjected to gel electrophoresis and purified. The product was ligated to Bam HI site and Not I site of an animal cell expression vector pcDNA3.1(+) (Invitrogen, Inc.) by using Takara ligation kit ver. 2 (Takara Bio). This ligation reaction solution was used to transform a competent cell Escherichia coli JM109 (Takara Bio).
From a plurality of colonies thus obtained, a plasmid was prepared, and with respect to 2 clones wherein a fragment of about 3.5 kbp was confirmed to be inserted, the base sequence was reacted by using primer DNAs [primer BGH RV (SEQ ID NO. 124), primer T7 (SEQ ID NO: 8), primer A2 (SEQ ID NO: 48), primer B1 (SEQ ID NO: 49), primer B2 (SEQ ID NO: 50), primer F1 (SEQ ID NO: 51), primer F2 (SEQ ID NO: 52), primer F3 (SEQ ID NO: 53), primer F4 (SEQ ID NO: 54), primer F5 (SEQ ID NO: 55), primer R1 (SEQ ID NO: 56), primer R2 (SEQ ID NO: 57), primer R3 (SEQ ID NO: 58), primer R4 (SEQ ID NO: 59)] and BigDye Terminator Cycle Sequencing Kit (Applied Biosystems), and the base sequence was determined by DNA sequencer ABI PRISM 3100 DNA analyzer (Applied Biosystems). As a result, one-base substitution was observed in both the clones as compared with SEQ ID NO: 43. That is, in “clone 1”, C at position 1185 in SEQ ID NO: 43 was changed into A, and in “clone 2”, A at position 2509 was changed into T, and the change in both cases was a change to a termination codon on the frame.
Accordingly, the following correction was conducted. To introduce a termination codon on the same frame into an upstream from an initiation codon, the plasmid DNA in “clone 2” was cleaved with Nhe I, blunt-ended, re-cyclized by ligation and introduced into Escherichia coli JM109. The plasmid DNA in the resulting “modified clone 2” was cleaved with Bst EII and Not I, to remove a DNA fragment (about 1.1 kbp) having the one-base substitution at position 2509. Separately, the plasmid DNA in “clone 1” was cleaved with Bst EII and Not I to prepare a DNA fragment (about 1.1 kbp) of predetermined sequence. The above 2 DNA fragments were ligated and introduced into Escherichia coli JM109. After transformation, the transformant was cultured on agar medium at 30° C. for 2 days, and from a colony appearing on the second day, plasmid was extracted. This clone was determined for its base sequence in the same manner as described above, and confirmed to agree with SEQ ID NO: 43. The transformant having this plasmid was designated Escherichia coli JM109/pCDNA3.1 (+)-NheBlunt-TCH212.
Example 34 Identification of a Partial Sequence of Mouse TCH 200 GeneUsing two primer DNAs, i.e. primer m200A1 (SEQ ID NO. 156) and primer m200B1 (SEQ ID NO. 157), the mouse skin cDNA prepared in Example 15 was subjected to PCR with Advantage 2 DNA Polymerase (Clontech) under the following conditions (1) to (5):
(1) reaction at 94° C. for 3 minutes,
(2) 5 cycles each consisting of reaction at 94° C. for 5 seconds and at 72° C. for 1 minute,
(3) 5 cycles each consisting of reaction at 94° C. for 5 seconds and at 70° C. for 1 minute,
(4) 25 cycles each consisting of reaction at 94° C. for 5 seconds and at 68° C. for 1 minute, and
(5) reaction at 70° C. for 10 minutes.
The resulting amplification product was subjected to gel electrophoresis, and a fragment of about 1.1 kb was excised and purified by QIAquick Gel Extraction Kit (Qiagen). The purified product was reacted by using primer m200A1 (SEQ ID NO. 156), primer m200B1 (SEQ ID NO. 157) and BigDye Terminator Cycle Sequencing Kit (Applied Biosystems), and the base sequence of the product amplified by PCR was determined by DNA sequencer ABI PRISM 3100 DNA analyzer (Applied Biosystems). From the determined sequence, two primer DNAs, i.e. primer m200A2 (SEQ ID NO. 158) and primer m200B2 (SEQ ID NO. 159) were designed and used in determination of the base sequence of the PCR amplification product. As a result, a partial sequence of mouse TCH200 gene cDNA having a 1064-base sequence represented by SEQ ID NO. 155 was identified.
Example 35 Analysis of Distribution of Mouse TCH200 Gene Product in TissuesThe expression level (copy number) of mouse TCH200 by the cDNA prepared in Example 15 in each mouse tissue was measured by TanMan PCR with TaqMan probe m200T1 (SEQ ID NO. 160) designed from the base sequence represented by SEQ ID NO. 155, and two primer DNAs, i.e. primer m200A2 (SEQ ID NO. 158) and primer m200B2 (SEQ ID NO. 159) used in Example 34. The same cDNA was also measured for the expression level (copy number) of rodent glyceraldehyde-3-phosphate dehydrogenase (GAPDH) by using TaqMan rodent GAPDH control reagents (Applied Biosystems). The PCR reaction involved a reaction at 50° C. for 2 minutes and at 95° C. for 10 minutes and 40 cycles each consisting of a reaction at 95° C. for 15 seconds and at 60° C. for 1 minute by using TaqMan Universal PCR Master Mix (Applied Biosystems) in ABI PRISM 7900 sequence detection system (Applied Biosystems), and simultaneously detection was carried out.
The results are shown in
In each tissue in 7-week-old BALB/c mouse, the mouse TCH200 gene product (mRNA) was expressed at a certain degree in the cerebrum, medulla oblongata, spinal cord, ischiatic nerve, duodenum, caecum, colon, ovary and uterus, expressed highly in the anterior stomach, jejunoileum and prostate and expressed most highly in the skin and rectum.
Example 36 Construction of Human TCH200 (SEQ ID NO:66) Expression VectorHuman TCH200 (SEQ ID NO: 66) expression vector was constructed by the following method.
Using the plasmid obtained in Example 11 as a template, PCR was conducted with primer TCH200F (SEQ ID NO. 161) and primer TCH200R (SEQ ID NO. 162) and Pyrobest DNA Polymerase (Takara Bio) under the following conditions (1) to (5). The 5′-terminal side primer TCH200F and the 3′-terminal side primer TCH200R were designed such that Kpn I site and Not I site were added respectively to the 5′-terminal side for cloning into a vector.
(1) reaction at 98° C. for 5 seconds,
(2) 2 cycles each consisting of reaction at 98° C. for 5 seconds and at 68° C. for 290 seconds,
(3) 23 cycles each consisting of reaction at 98° C. for 5 seconds and at 66° C. for 290 seconds,
(4) 3 cycles each consisting of reaction at 98° C. for 5 seconds and at 64° C. for 290 seconds, and
(5) reaction at 72° C. for 7 minutes.
The PCR reaction solution was subjected to gel electrophoresis, and a major band was purified. The PCR fragment thus obtained was digested with restriction enzymes KpnI and NotI at 37° C. for 1 hour, and the reaction solution was subjected to gel electrophoresis and purified. The product was ligated to KpnI site and NotI site of an animal cell expression vector pcDNA3.1 (+) (Invitrogen, Inc.) by using Takara ligation kit ver. 2 (Takara Bio). This ligation reaction solution was used to transform Escherichia coli JM109 (Takara Bio) by the heat shock method. From a plurality of colonies thus obtained, plasmid was prepared, and this base sequence was reacted with primer DNAs [primer T7 (SEQ ID NO. 163), primer AF (SEQ ID NO. 164), primer BF (SEQ ID NO. 165), primer CF (SEQ ID NO. 166), primer DF (SEQ ID NO. 167), primer BGH RV (SEQ ID NO. 168), primer DR (SEQ ID NO. 169), primer CR (SEQ ID NO. 170), primer BR (SEQ ID NO. 171), primer AR (SEQ ID NO. 172)] and BigDye Terminator Cycle Sequencing Kit (Applied Biosystems), and the base sequence was confirmed by DNA sequencer ABI PRISM 3100 DNA analyzer (Applied Biosystems). The transformant having this plasmid was designated Escherichia coli JM109/pCDNA3.1(+)/TCH200.
Example 37 Preparation of Human TCH200 (SEQ ID NO:66)-Expressing CHO Cell Strain and Measurement of the Expression Level of the Introduced GeneThe Escherichia coli JM109/pCDNA3.1(+)/TCH200 was cultured, and from the Escherichia coli, plasmid DNA was prepared by using EndoFree Plasmid Maxi Kit (Qiagen). This plasmid DNA was introduced into CHO-K1 cell by Nucleofector (Amakusa) and Cell Line Nucleofector Kit T (Amakusa) according to their attached protocol. The CHO-K1 cells at a density of 1×106 were suspended at ordinary temperature in 100 μl of solution T to which supplements attached to the kit had been added, and then 2 μg of plasmid DNA was mixed with the resulting suspension and introduced into a cuvette and subjected to Nucleofetor program U-27. Immediately, 500 μl of RPMI1640 medium (Nikken Seibutsu Igaku Kenkyusho) containing 10% fetal bovine serum (ICN Biomedicals), which has been pre-warmed at 37° C., was added thereto, and 1 ml of Ham's F12 medium (Nikken Seibutsu Igaku Kenkyusho) containing 10% fetal bovine serum was added thereto, and the suspension was dropped onto a 6-well plate, which has been pre-warmed at 37° C., and cultured. After 3 days, the medium was replaced with the medium containing 0.4 mg/ml geneticine (Invitrogen, Inc.) to initiate selection of human TCH200 (SEQ ID NO:66) expression cells. Four days after selection was initiated, the transfected cells were peeled off, and the recovered cells were inoculated at a density of 100 cells/well in FBS-Ham's F12 medium containing 10% bovine fetal serum in a 24-well plate. After 4 days, the number of colonies grown in each well and the approximate number of cells per colony were measured, whereby the number of cells per well was calculated, and on the basis of this number, the cells were inoculated such that one cell was put in one well on a 96-well plate, to order to produce a monoclonal cell expressing human TCH200 (SEQ ID NO:66).
From the grown monoclonal cells expressing human TCH200 (SEQ ID NO:66), total RNA was prepared by RNeasy 96 Kit (Qiagen). The prepared total RNA was subjected to reverse transcription reaction by TaqMan Reverse Transcription Reagents (Applied Biosystems) to prepare cDNA. The cDNA was measured for the expression level of human TCH200 (SEQ ID NO:66) by TaqMan PCR with primer TMF (SEQ ID NO: 94) and primer TMR (SEQ ID NO: 95) used in Example 12 and TaqMan probe P1 (SEQ ID NO: 96).
The reaction involved a reaction at 50° C. for 2 minutes and at 95° C. for 10 minutes and 40 cycles each consisting of a reaction at 95° C. for 15 seconds and at 60° C. for 1 minute by using TaqMan Universal PCR Master Mix (Applied Biosystems) in ABI PRISM 7900 sequence detection system (Applied Biosystems), and simultaneously detection was carried out. As a cell strain highly expressing human TCH200 (SEQ ID NO:66) gene, clone No. G10 was selected.
Example 38 Analysis of Expression of Human TCH230 (SEQ ID NO:1), Human TCH234 (SEQ ID NO:18), Human TCH212 (SEQ ID NO:42) and Human TCH200 (SEQ ID NO:66) Gene in Commercial Normal Human Cells(1) Preparation of Normal Human Cell cDNA
Normal human cells were purchased from Cambrex BioScience Walkersvill and cultured according to a method attached to the product. The cells used in the experiment and the mediums used in culturing the cells are shown in Table 3.
Each cell was cultured in a 75 cm2 culture flask until the cell became subconfluent, and the cells were recovered by treatment with trypsin-EDTA. From the recovered cells, total RNA was prepared by using ISOGEN (Nippon Gene) or RNeasy Mini Kit (Qiagen) (in either case, contaminant DNA was removed by treatment with DNase). The prepared total RNA was subjected to reverse transcription reaction with TaqMan Reverse Transcription Reagents (Applied Biosystems) to prepare cDNA.
(2) Analysis of Expression of Human TCH230 (SEQ ID NO:1), Human TCH234 (SEQ ID NO:18), Human TCH212 (SEQ ID NO:42) and Human TCH200 (SEQ ID NO:66) Genes in the Commercial Normal Human CellsThe expression level (Ct value) of each cDNA was measured in the following manner by using TaqMan PCR. Primer TF (SEQ ID NO. 15) and primer TR (SEQ ID NO. 16) used in Example 2 and TaqMan probe T1 (SEQ ID NO. 17) were used for human TCH230 (SEQ ID NO:1); primer TMF (SEQ ID NO: 32) and primer TMR (SEQ ID NO: 33) used in Example 6 and TaqMan probe P1 (SEQ ID NO: 38) were used for human TCH234 (SEQ ID NO:18); primer TF (SEQ ID NO: 63) and primer TR (SEQ ID NO: 64) used in Example 8 and TaqMan probe T1 (SEQ ID NO: 65) were used for human TCH212 (SEQ ID NO:42); and primer TMF (SEQ ID NO: 94) and primer TMR (SEQ ID NO: 95) used in Example 12 and TaqMan probe P1 (SEQ ID NO: 96) were used for human TCH200 (SEQ ID NO:66). The same cDNA was also examined for the expression level (Ct value) of glyceraldehyde-3-phosphate dehydrogenase (GAPDH) by using TaqMan GAPDH control reagents (Applied Biosystems). The reaction involved a reaction at 50° C. for 2 minutes and at 95° C. for 10 minutes and 40 cycles each consisting of a reaction at 95° C. for 15 seconds and at 60° C. for 1 minute by using TaqMan Universal PCR Master Mix (Applied Biosystems) in ABI PRISM 7900 sequence detection system (Applied Biosystems), and simultaneously detection was carried out.
On the basis of measurements obtained by the above method, the relative expression level of each TCH gene (human TCH230 (SEQ ID NO:1), human TCH234 (SEQ ID NO:18), human TCH212 (SEQ ID NO:42) and human TCH200 (SEQ ID NO:66)) to GAPDH was calculated according to the following equation:
Relative expression level=½A-B
wherein A represents the Ct value of human TCH230 (SEQ ID NO:1) gene, human TCH234 (SEQ ID NO:18) gene, human TCH212 (SEQ ID NO:42) gene or human TCH200 (SEQ ID NO:66) gene, and B represents the Ct value of GAPDH gene.
The result of human TCH230 (SEQ ID NO:1) gene is shown in
Human TCH230 was expressed at a certain degree in the main artery endothelial cell, coronary artery endothelial cell, main artery smooth muscle cell, coronary artery smooth muscle cell, uterus smooth muscle cell, mammary gland epithelial cell, lung fibroblast, kidney proximal urine tubule epithelial cell, mesangial cell, kidney cortex epithelial cell, knee joint cartilage cell and osteoblast and expressed strongly in the bronchial epithelial cell (with RA) and bronchial epithelial cell (without RA).
The result of human TCH234 (SEQ ID NO:18) gene is shown in
Human TCH234 was expressed at a certain degree in the main artery endothelial cell, coronary artery endothelial cell and kidney proximal urine tubule epithelial cell and expressed particularly strongly in the kidney cortex epithelial cell.
The result of human TCH200 (SEQ ID NO:66) gene is shown in
Human TCH200 was expressed at a certain degree in the main artery endothelial cell, coronary artery endothelial cell, main artery smooth muscle cell, skeletal muscle satellite cell and lung fibroblast, expressed strongly in the kidney cortex epithelial cell, and expressed particularly strongly in the mammary gland epithelial cell, bronchial epithelial cell (with RA) and bronchial epithelial cell (without RA).
Human TCH212 was not expressed in any cells.
Example 39 Analysis of Expression of Mouse TCH234 and Mouse TCH212 (SEQ ID NO:143) Gene Products in the Lung of Chronic Obstructive Pulmonary Disease (COPD) Model Mouse(1) Preparation of COPD Model Mouse by Exposure to Cigarette Smoke and Preparation of Lung cDNA
A COPD model was prepared by giving mainstream smoke generated from Kentucky Reference Cigarette 1R1 to C57BL/6N mice (6-week-old, Charles River Japan) for 1 to 4 hours/day at the interval of 5 days/week for 6 months in total. That is, Kentucky Reference Cigarette 1R1 was attached to a cigarette smoke generator (SG-200, Shibata Kagaku), and mainstream smoke was collected under the condition of 35 ml/puff, 10 puff/min, and 25 puff/cigarette. The obtained mainstream smoke was diluted to a density of 3% (V/V) with air, and then sent to an acrylic exposure chamber where mice were present, and the cigarette smoke was given to the mice under spontaneous respiration. As a control group, normal mice were used.
On the day after final exposure was finished, the mice were killed under pentobarbital anesthesia, and after washing bronchial pulmonary alveoli, lungs were removed. The removed lungs were frozen in liquid nitrogen, then milled with a frozen-tissue milling device, and immersed in ISOGEN (Nippon Gene) in a 10-fold excess amount relative to the wet lungs. From a group exposed to cigarette smoke for 1 month (n=10), its control group (n=6), a group exposed to cigarette smoke for 3 months (n=8), its control group (n=8), a group exposed to cigarette smoke for 6 months (n=8), and its control group (n=8), total RNA was extracted by using ISOGEN according to its attached manual. Contaminant DNA was removed by using QIAGEN RNeasy Mini Kit (Qiagen) and RNase-Free DNAse set (Qiagen). The prepared total RNA was subjected to reverse transcription reaction with TaqMan Reverse Transcription Reagents (Applied Biosystems) to prepare cDNA.
(2) Analysis of Expression of Mouse TCH234 Gene Product in COPD Model Mouse LungUsing two primer DNAs, i.e. primer m234-TMF (SEQ ID NO. 128) and primer m234-TMR (SEQ ID NO. 129) used in Example 22 and TaqMan probe m234T1 (SEQ ID NO. 130), the expression level (Ct value) of mouse TCH234 by the COPD model mouse lung cDNA prepared in (1) above was measured by TaqMan PCR. The same cDNA was also measured for the expression level (Ct value) of 18S rRNA by using Eukaryotic 18S rRNA Pre-Developed TaqMan Assay Reagents (Applied Biosystems). The reaction involved a reaction at 50° C. for 2 minutes and at 95° C. for 10 minutes and 40 cycles each consisting of a reaction at 95° C. for 15 seconds and at 60° C. for 1 minute by using TaqMan Universal PCR Master Mix (Applied Biosystems) in ABI PRISM 7900 sequence detection system (Applied Biosystems), and simultaneously detection was carried out.
On the basis of measurements obtained by the above method, the relative expression level of mouse TCH234 to 18S rRNA was calculated according to the following equation:
Relative expression level=½A-B
wherein A represents the Ct value of mouse TCH234 gene, and B represents the Ct value of 18S rRNA gene.
In statistical analysis, SAS software (manufactured by SAS) was used, and p<0.05 was regarded as significant in Student's t test.
The result is shown in
In the lungs of COPD model mice in all the groups exposed to cigarette smoke for 1, 3 and 6 months, a significant increase in expression was observed (1 month, p=0.0415; 3 months, p=0.0058; 6 months, p=0.0001). From this result, TCH234 was considered to participate in respiratory diseases such as COPD.
(3) Analysis of Expression of Mouse TCH212 (SEQ ID NO:143) Gene Product in COPD Model Mouse LungUsing two primer DNAs, i.e. primer m212TF (SEQ ID NO. 146) and primer m212TR (SEQ ID NO. 147) used in Example 30 and TaqMan probe m212T1 (SEQ ID NO. 148), the expression level (Ct value) of mouse TCH212 (SEQ ID NO:143) in the COPD model mouse lung cDNA prepared in (1) above was measured by TaqMan PCR, and the relative expression to 18S rRNA was calculated in the same manner as in (2) above. Statistical analysis was conducted in the same manner as in (2) above.
The results are shown in
(1) Preparation of Colitis Model Mice by Administration of DSS and Preparation of Large Intestine cDNA
Colitis model mice were prepared by administering DSS (Dextran Sulfate Sodium 5000, Wako Pure Chemical Industries, Ltd.) into BALB/cA mice (male, 6-week-old, Nippon Clea).
That is, the mice were allowed 5% DSS solution ad libitum, and on the second day when the symptom of diarrhea appeared and on the seventh day when bleeding also appeared, the animals were slaughtered in a carbon dioxide gas, and a part of the large intestine (5 cm from the anal verge) was excised. As a control group, normal mice were used. The removed large intestines from 3 mice were washed with physiological saline and extracted by using ISOGEN (Nippon Gene) according to its attached manual, to give total RNA. Contaminant DNA was removed by using QIAGEN RNeasy Mini kit and RNase-Free DNAse set (Qiagen). The prepared total RNA was subjected to reverse transcription reaction with TaqMan Reverse Transcription Reagents (Applied Biosystems) to prepare cDNA.
(2) Analysis of Expression of Mouse TCH230 (SEQ ID NO:112) Gene Product in Colitis Model Mouse Large IntestineUsing two primer DNAs, i.e. primer m230TF (SEQ ID NO. 113) and primer m230TR (SEQ ID NO. 114) used in Example 14 and TaqMan probe m230T1 (SEQ ID NO. 115), the expression level (Ct value) of mouse TCH230 (SEQ ID NO:112) by the colitis model mouse large intestine cDNA prepared in (1) above was measured by TaqMan PCR. The same cDNA was also measured for the expression level (Ct value) of 18S rRNA by using eukaryotic 18S rRNA Pre-Developed TaqMan Assay Reagents (Applied Biosystems). The reaction involved a reaction at 50° C. for 2 minutes and at 95° C. for 10 minutes and 40 cycles each consisting of a reaction at 95° C. for 15 seconds and at 60° C. for 1 minute by using TaqMan Universal PCR Master Mix (Applied Biosystems) in ABI PRISM 7900 sequence detection system (Applied Biosystems), and simultaneously detection was carried out.
On the basis of measurements obtained by the above method, the relative expression level of mouse TCH230 (SEQ ID NO:112) to 18S rRNA was calculated according to the following equation:
Relative expression level=½A-B
wherein A represents the Ct value of mouse TCH230 (SEQ ID NO:112) gene, and B represents the Ct value of 18S rRNA gene.
The result is shown in
An increase in expression of mouse TCH230 (SEQ ID NO:112) was observed on both the second and seventh days in the large intestines of colitis model mice given DSS. From this result, TCH230 was considered to participate in colitis such as ulcerous colitis, Crohn's disease and ischemic colitis.
INDUSTRIAL APPLICABILITYThe protein A of the present invention, the polynucleotide encoding the same, the antibody thereto, and the antisense polynucleotide are useful as diagnostic markers etc. for diseases such as hyperlipemia, genital diseases (e.g., prostatic hypertrophy, prostatitis, testis neurosis, ovarian cystoma etc.), digestive diseases (e.g., irritable bowel syndrome, ulcerous colitis, Crohn's disease, ischemic colitis, gastritis, digestive ulcer, rectitis, reflux esophagitis, duodenitis etc.), respiratory diseases (e.g., chronic obstructive pulmonary disease, bronchial asthma etc.), autoimmune diseases (e.g., myasthenia gravis, glomerulonephritis, multiple sclerosis, Sjogren's syndrome, systemic lupus erythematosus etc.), allergic diseases (e.g., pollinosis, allergic rhinitis, anaphylactic shock, atopic dermatitis etc.), rheumatoid diseases (e.g., chronic articular rheumatism, osteoarthritis, gout etc.), thymic diseases, immune disorders (e.g., immune disorders accompanying leukocyte abnormalities, spleen function insufficiency or thymic abnormalities), diabetes, hypothyroidism, circulatory diseases (e.g., cardiac insufficiency, arrhythmia, long QT syndrome, arteriosclerosis, angina etc.), pancreatic diseases (e.g., pancreatic function insufficiency such as pancreatitis, pancreatic cystic fibrosis etc.), cancers (e.g., testis tumor, ovarian cancer, breast cancer, esophagus cancer, lung cancer, kidney cancer, hepatoma, non-small cell lung cancer, prostate cancer, stomach cancer, bladder cancer, uterine cervix cancer, colon cancer, rectum cancer, pancreatic cancer, thymoma, myoma etc.) etc., preferably hyperlipemia, arteriosclerosis, genital diseases, digestive diseases etc. The protein A of the present invention, the polynucleotide encoding the same and the antibody thereto are useful for screening a compound or a salt thereof that promotes or inhibits the activity of the protein, a compound or a salt thereof that promotes or inhibits the expression of the gene for the protein, and a compound or a salt thereof that promotes or inhibits the expression of the protein. The compound or a salt thereof that promotes or inhibits the activity of the protein, the compound or a salt thereof that promotes or inhibits the expression of the gene for the protein, etc., can be used as prophylactic/therapeutic agents for diseases such as hyperlipemia, genital diseases (e.g., prostatic hypertrophy, prostatitis, testis neurosis, ovarian cystoma etc.), digestive diseases (e.g., irritable bowel syndrome, ulcerous colitis, Crohn's disease, ischemic colitis, gastritis, digestive ulcer, rectitis, reflux esophagitis, duodenitis etc.), respiratory diseases (e.g., chronic obstructive pulmonary disease, bronchial asthma etc.), autoimmune diseases (e.g., myasthenia gravis, glomerulonephritis, multiple sclerosis, Sjogren's syndrome, systemic lupus erythematosus etc.), allergic diseases (e.g., pollinosis, allergic rhinitis, anaphylactic shock, atopic dermatitis etc.), rheumatoid diseases (e.g., chronic articular rheumatism, osteoarthritis, gout etc.), thymic diseases, immune disorders (e.g., immune disorders accompanying leukocyte abnormalities, spleen function insufficiency or thymic abnormalities), diabetes, hypothyroidism, circulatory diseases (e.g., cardiac insufficiency, arrhythmia, long QT syndrome, arteriosclerosis, angina etc.), pancreatic diseases (e.g., pancreatic function insufficiency such as pancreatitis, pancreatic cystic fibrosis etc.), cancers (e.g., testis tumor, ovarian cancer, breast cancer, esophagus cancer, lung cancer, kidney cancer, hepatoma, non-small cell lung cancer, prostate cancer, stomach cancer, bladder cancer, uterine cervix cancer, colon cancer, rectum cancer, pancreatic cancer, thymoma, myoma etc.) etc., preferably hyperlipemia, arteriosclerosis, genital diseases, digestive diseases etc.
The protein B of the present invention, the polynucleotide encoding the same, the antibody thereto, and the antisense polynucleotide are useful as diagnostic markers etc. for diseases such as renal diseases (e.g., renal insufficiency, uremia etc.), digestive diseases (e.g., irritable bowel syndrome, ulcerous colitis, Crohn's disease, ischemic colitis, gastritis, digestive ulcer, rectitis, reflux esophagitis, duodenitis etc.), respiratory diseases (e.g., chronic obstructive pulmonary disease, asthma etc.), pancreatic diseases (e.g., pancreatic function insufficiency such as pancreatitis, pancreatic cystic fibrosis etc.), autoimmune diseases (e.g., myasthenia gravis, glomerulonephritis, multiple sclerosis, Sjogren's syndrome, systemic lupus erythematosus etc.), allergic diseases (e.g., pollinosis, allergic rhinitis, anaphylactic shock, atopic dermatitis etc.), rheumatoid diseases (e.g., chronic articular rheumatism, osteoarthritis, gout etc.), thymic diseases, immune disorders (e.g., immune disorders accompanying leukocyte abnormalities, spleen function insufficiency or thymic abnormalities), genital diseases (e.g., prostatic hypertrophy, prostatitis, testis neurosis, ovarian cystoma etc.), spleen diseases, cancers (e.g., testis tumor, ovarian cancer, breast cancer, esophagus cancer, lung cancer, kidney cancer, hepatoma, non-small cell lung cancer, prostate cancer, stomach cancer, bladder cancer, uterine cervix cancer, colon cancer, rectum cancer, pancreatic cancer, thymoma, myoma etc.), diabetes, hypertension, ischemia-reperfusion injury, central nerve diseases (e.g., Alzheimer's disease, Parkinson's syndrome, schizophrenia, cerebral vascular dementia, cerebral ischemia, epilepsy etc.) etc., preferably respiratory diseases, renal diseases, digestive diseases etc. The protein B of the present invention, the polynucleotide encoding the same and the antibody thereto are useful for screening a compound or a salt thereof that promotes or inhibits the activity of the protein, or a compound or a salt thereof that promotes or inhibits the expression of the protein. The compound or a salt thereof that promotes or inhibits the activity of the protein, the compound or a salt thereof that promotes or inhibits the expression of the gene for the protein or the compound or a salt thereof that promotes or inhibits the expression of the protein can be used as prophylactic/therapeutic agents for diseases such as renal diseases (e.g., renal insufficiency, uremia etc.), digestive diseases (e.g., irritable bowel syndrome, ulcerous colitis, Crohn's disease, ischemic colitis, gastritis, digestive ulcer, rectitis, reflux esophagitis, duodenitis etc.), respiratory diseases (e.g., chronic obstructive pulmonary disease, asthma etc.), pancreatic diseases (e.g., pancreatic function insufficiency such as pancreatitis, pancreatic cystic fibrosis etc.), autoimmune diseases (e.g., myasthenia gravis, glomerulonephritis, multiple sclerosis, Sjogren's syndrome, systemic lupus erythematosus etc.), allergic diseases (e.g., pollinosis, allergic rhinitis, anaphylactic shock, atopic dermatitis etc.), rheumatoid diseases (e.g., chronic articular rheumatism, osteoarthritis, gout etc.), thymic diseases, immune disorders (e.g., immune disorders accompanying leukocyte abnormalities, spleen function insufficiency or thymic abnormalities), genital diseases (e.g., prostatic hypertrophy, prostatitis, testis neurosis, ovarian cystoma etc.), spleen diseases, cancers (e.g., testis tumor, ovarian cancer, breast cancer, esophagus cancer, lung cancer, kidney cancer, hepatoma, non-small cell lung cancer, prostate cancer, stomach cancer, bladder cancer, uterine cervix cancer, colon cancer, rectum cancer, pancreatic cancer, thymoma, myoma etc.), diabetes, hypertension, ischemia-reperfusion injury, central nerve diseases (e.g., Alzheimer's disease, Parkinson's syndrome, schizophrenia, cerebral vascular dementia, cerebral ischemia, epilepsy etc.) etc., preferably respiratory diseases, renal diseases, digestive diseases etc.
The protein C of the present invention, the polynucleotide encoding the same, the antibody thereto, and the antisense polynucleotide are useful as diagnostic markers etc. for diseases such as pancreatic diseases (e.g., pancreatic function insufficiency such as pancreatitis, pancreatic cystic fibrosis etc.), genital diseases (e.g., prostatic hypertrophy, prostatitis, testis neurosis, ovarian cystoma etc.), central nerve diseases (e.g., Alzheimer's disease, Parkinson's syndrome, schizophrenia, cerebral vascular dementia, cerebral ischemia, epilepsy etc.), digestive diseases (e.g., irritable bowel syndrome, ulcerous colitis, Crohn's disease, ischemic colitis, gastritis, digestive ulcer, rectitis, reflux esophagitis, duodenitis etc.), respiratory diseases (e.g., chronic obstructive pulmonary disease, asthma etc.), diabetes, hyperlipemia, cholestasis, or cancers (e.g., testis tumor, ovarian cancer, breast cancer, esophagus cancer, lung cancer, kidney cancer, hepatoma, non-small cell lung cancer, prostate cancer, stomach cancer, bladder cancer, uterine cervix cancer, colon cancer, rectum cancer, pancreatic cancer, thymoma, myoma etc.) etc., preferably pancreatic diseases, central nerve diseases, digestive diseases, respiratory diseases etc. The protein C of the present invention, the polynucleotide encoding the same and the antibody thereto are useful for screening a compound or a salt thereof that promotes or inhibits the activity of the protein, a compound or a salt thereof that promotes or inhibits the expression of the gene for the protein, or a compound or a salt thereof that promotes or inhibits the expression of the protein. The compound or a salt thereof that promotes or inhibits the activity of the protein, the compound or a salt thereof that promotes or inhibits the expression of the gene for the protein, or the compound or a salt thereof that promotes or inhibits the expression of the protein can be used as prophylactic/therapeutic agents for diseases such as pancreatic diseases (e.g., pancreatic function insufficiency such as pancreatitis, pancreatic cystic fibrosis etc.), genital diseases (e.g., prostatic hypertrophy, prostatitis, testis neurosis, ovarian cystoma etc.), central nerve diseases (e.g., Alzheimer's disease, Parkinson's syndrome, schizophrenia, cerebral vascular dementia, cerebral ischemia, epilepsy etc.), digestive diseases (e.g., irritable bowel syndrome, ulcerous colitis, Crohn's disease, ischemic colitis, gastritis, digestive ulcer, rectitis, reflux esophagitis, duodenitis etc.), respiratory diseases (e.g., chronic obstructive pulmonary disease, asthma etc.), diabetes, hyperlipemia, cholestasis, or cancers (e.g., testis tumor, ovarian cancer, breast cancer, esophagus cancer, lung cancer, kidney cancer, hepatoma, non-small cell lung cancer, prostate cancer, stomach cancer, bladder cancer, uterine cervix cancer, colon cancer, rectum cancer, pancreatic cancer, thymoma, myoma etc.) etc., preferably pancreatic diseases, central nerve diseases, digestive diseases, respiratory diseases etc.
The protein D of the present invention, the polynucleotide encoding the same, the antibody to the same, and the antisense polynucleotide are useful as diagnostic markers for diseases such as inflammatory diseases (e.g., septicemia, pneumonia, encephalitis, meningitis, hepatitis, myocarditis, pleurisy etc.), autoimmune diseases (e.g., myasthenia gravis, glomerulonephritis, multiple sclerosis, Sjogren's syndrome, systemic lupus erythematosus etc.), allergic diseases (e.g., pollinosis, allergic rhinitis, anaphylactic shock, atopic dermatitis etc.), rheumatoid diseases (e.g., chronic articular rheumatism, osteoarthritis, gout etc.), diabetic neurosis, thymic diseases, immune disorders (e.g., immune disorders accompanying leukocyte abnormalities, spleen function insufficiency or thymic abnormalities), digestive diseases (e.g., irritable bowel syndrome, ulcerous colitis, Crohn's disease, ischemic colitis, gastritis, digestive ulcer, rectitis, reflux esophagitis, duodenitis etc.), respiratory diseases (e.g., chronic obstructive pulmonary disease, asthma etc.), circulatory diseases (e.g., cardiac insufficiency, arrhythmia, long QT syndrome, arteriosclerosis, angina etc.), hepatic diseases (e.g., hepatocirrhosis etc.), renal diseases (e.g., renal insufficiency, uremia etc.), muscular diseases (e.g., muscular dystrophy etc.), pancreatic diseases (e.g., pancreatic function insufficiency such as pancreatitis, pancreatic cystic fibrosis etc.), genital diseases (e.g., prostatic hypertrophy, prostatitis, testis neurosis, ovarian cystoma etc.), burns, pain syndrome (e.g., cancerous sharp pain, referred pain etc.), cancers (e.g., testis tumor, ovarian cancer, breast cancer, esophagus cancer, lung cancer, kidney cancer, hepatoma, non-small cell lung cancer, prostate cancer, stomach cancer, bladder cancer, uterine cervix cancer, colon cancer, rectum cancer, pancreatic cancer, thymoma, myoma etc.) etc., preferably inflammatory diseases, rheumatoid diseases, diabetic neurosis etc. The protein D of the present invention, the polynucleotide encoding the same and the antibody thereto are useful in screening a compound or a salt thereof that promotes or inhibits the activity of the protein, a compound or a salt thereof that promotes or inhibits the expression of the gene for the protein, a compound or a salt thereof that promotes or inhibits the expression of the protein, a compound or a salt thereof that alters the binding property between the protein and its ligand. The compound or a salt thereof that promotes or inhibits the activity of the protein, the compound or a salt thereof that promotes or inhibits the expression of the gene for the protein, the compound or a salt thereof that promotes or inhibits the expression of the protein, or the compound or a salt thereof that alters the binding property between the protein and its ligand can be used as prophylactic/therapeutic agents for diseases such as inflammatory diseases (e.g., septicemia, pneumonia, encephalitis, meningitis, hepatitis, myocarditis, pleurisy etc.), autoimmune diseases (e.g., myasthenia gravis, glomerulonephritis, multiple sclerosis, Sjogren's syndrome, systemic lupus erythematosus etc.), allergic diseases (e.g., pollinosis, allergic rhinitis, anaphylactic shock, atopic dermatitis etc.), rheumatoid diseases (e.g., chronic articular rheumatism, osteoarthritis, gout etc.), diabetic neurosis, thymic diseases, immune disorders (e.g., immune disorders accompanying leukocyte abnormalities, spleen function insufficiency or thymic abnormalities), digestive diseases (e.g., irritable bowel syndrome, ulcerous colitis, Crohn's disease, ischemic colitis, gastritis, digestive ulcer, rectitis, reflux esophagitis, duodenitis etc.), respiratory diseases (e.g., chronic obstructive pulmonary disease, asthma etc.), circulatory diseases (e.g., cardiac insufficiency, arrhythmia, long QT syndrome, arteriosclerosis, angina etc.), hepatic diseases (e.g., hepatocirrhosis etc.), renal diseases (e.g., renal insufficiency, uremia etc.), muscular diseases (e.g., muscular dystrophy etc.), pancreatic diseases (e.g., pancreatic function insufficiency such as pancreatitis, pancreatic cystic fibrosis etc.), genital diseases (e.g., prostatic hypertrophy, prostatitis, testis neurosis, ovarian cystoma etc.), burns, pain syndrome (e.g., cancerous sharp pain, referred pain etc.), cancers (e.g., testis tumor, ovarian cancer, breast cancer, esophagus cancer, lung cancer, kidney cancer, hepatoma, non-small cell lung cancer, prostate cancer, stomach cancer, bladder cancer, uterine cervix cancer, colon cancer, rectum cancer, pancreatic cancer, thymoma, myoma etc.) etc., preferably inflammatory diseases, rheumatoid diseases, diabetic neurosis etc.
Claims
1-115. (canceled)
116. A method of screening for a compound or salt thereof that promotes or inhibits the activity of a protein comprising the amino acid of SEQ ID NO:1, said method comprising the steps of:
- (1) measuring an activity of a protein comprising the amino acid sequence of SEQ ID NO:1;
- (2) introducing at least one compound or salt thereof;
- (3) measuring an activity of a protein comprising the amino acid sequence of SEQ ID NO:1 again;
- (4) comparing said activity measurements of step (1) and step (2); and
- (5) designating said compound or salt thereof as promoting or inhibiting the activity of said protein based on said comparing step (4).
117. The method of claim 116, wherein said protein interacts with a substrate.
118. The method of claim 117, wherein said substrate is a steroid hormone.
119. The method of claim 118, wherein said steroid hormone is selected from the group consisting of estrogen and androgen.
120. The method of claim 119, wherein said estrogen is estrone or metabolites thereof and said androgen is dehydroepiandrosterone or metabolites thereof.
121. The method of claim 116, wherein said protein is derived from a cell or said protein is synthetic or combinations thereof.
122. The method of claim 116, wherein said compound is a compound selected from the group consisting of peptides, proteins, non-peptide compounds, synthetic compounds, fermentation products and extracts.
123. The method of claim 116, wherein said measuring is performed without using a cell or cells.
124. The method of claim 116, wherein said measuring comprises using a cell.
125. The method of claim 116, wherein said steps are performed in vivo, ex vivo, in vitro, or in silico or combinations thereof.
126. The method of claim 116, wherein said activity is designated as inhibiting, wherein said inhibiting is by at least about 20 percent.
127. The method of claim 116, wherein said activity is designated as promoting, wherein said promoting is by at least about 20 percent.
128. The method of claim 117, wherein said activity is selected from the group consisting of activity due to:
- said protein interacting with said substrate;
- said protein interacting with said compound;
- a molecule or molecules interacting with said protein;
- a molecule or molecules interacting with said substrate; and
- and a molecule or molecules interacting with a molecule or molecules.
129. The method of claim 116, wherein said activity is obtained from a sample obtained from a uterine specimen, mammary specimen, bronchial specimen, lung specimen or kidney specimen.
Type: Application
Filed: Nov 16, 2009
Publication Date: Dec 9, 2010
Applicant: TAKEDA PHARMACEUTICAL COMPANY LIMITED (Chuo-ku)
Inventors: Yumiko Uno (Tsukuba-shi), Yukiko Hikichi (Tsukuba-shi), Yoji Sagiya (Tsukuba-shi), Atsushi Nakanishi (Tsukuba-shi)
Application Number: 12/619,164
International Classification: G01N 33/53 (20060101); G01N 33/00 (20060101);
