Amino Acid Or Sequencing Procedure Patents (Class 436/89)
  • Patent number: 7691330
    Abstract: A method and device for forming large arrays of polymers on a substrate (401). According to a preferred aspect of the invention, the substrate is contacted by a channel block (407) having channels (409) therein. Selected reagents are delivered through the channels, the substrate is rotated by a rotating stage (403), and the process is repeated to form arrays of polymers on the substrate. The method may be combined with light-directed methodolgies.
    Type: Grant
    Filed: May 26, 2000
    Date of Patent: April 6, 2010
    Assignee: Affymetrix, Inc.
    Inventors: James L. Winkler, Stephen P. A. Fodor, Christopher J. Buchko, Debra A. Ross, Lois Aldwin, Douglas N. Modlin
  • Patent number: 7680609
    Abstract: The invention aims to provide a highly accurate automatic biopolymer determination technique utilizing mass spectrometry whereby calibration prior to measurement or the addition of an internal standard to a sample can be eliminated. The biopolymer automatic identifying method of the invention comprises: retrieving a candidate molecule by matching an observed mass value X obtained by mass spectrometry with a predetermined database; selecting an arbitrary number of candidate molecules with high similarity scores; calibrating the observed mass value X using the candidate molecule as an internal standard; calculating relative error Ec between a calibrated mass value Xc and a theoretical mass value M of the candidate molecule; determining the standard deviation SEc of the relative error; determining a tolerance Tc of database search from the standard deviation SEc; and repeating a database search based on the tolerance Tc.
    Type: Grant
    Filed: September 4, 2003
    Date of Patent: March 16, 2010
    Assignee: National Institute of Advanced Industrial Science & Technology
    Inventors: Tohru Natsume, Hiroshi Nakayama
  • Publication number: 20100055729
    Abstract: Sensor devices and compositions can be used for detecting the presence of a target substance in a medium. The sensor devices and compositions can be configured to include at least one nanosensor through a high concentration of nanosensors that interact with the target substance to provide a detectable signal as an indication of such an interaction. The interaction is evidence that the medium includes the target substance. Various types of target substances can be detected with the sensor device, including inorganic molecules, organic molecules, atoms, ions, polypeptides, polynucleotides, cells, derivatives thereof, and combinations thereof.
    Type: Application
    Filed: August 27, 2008
    Publication date: March 4, 2010
    Inventor: Dong June Ahn
  • Patent number: 7670841
    Abstract: The present invention provides, as a method of analyzing the C-terminal amino acid sequence of a peptide with use of reaction technique for successively releasing the C-terminal amino acids, in which undesirable side reactions, such as cleavage of a peptide bond at the middle of the peptide, can be prevented and chemical treatments therein can be carried out under widely applicable conditions in the course of successive release of the C-terminal amino acids from a peptide, such a method comprising steps of dehydrating the gel on which a target peptide that has been separated by gel electrophoresis is held in the bound state; immersing it in a mixture solution of an alkanoic acid anhydride added with a small amount of a perfluoroalkanoic acid in a dipolar aprotic solvent to re-swell the gel carrier, forming a 5-oxazolone structure, at a temperature chosen in the range of from 30° C. to 80° C.
    Type: Grant
    Filed: November 28, 2003
    Date of Patent: March 2, 2010
    Assignee: NEC Corporation
    Inventors: Kenji Miyazaki, Akira Tsugita, Kenichi Kamijo, Takuji Nabetani
  • Patent number: 7655433
    Abstract: The invention provides methods for identifying and quantifying polypeptides in a sample. The methods include the steps of labeling peptides in a polypeptide sample with an isotope tag; adding a plurality of peptide standards to the polypeptide sample, wherein the peptide standards are labeled with an isotopically distinct version of the isotope tag; resolving the labeled sample and standard peptides into a plurality of fractions; analyzing the resolved fractions using mass spectrometry; identifying an isotope-tagged sample peptide in an analyzed fraction; and determining the amount of the identified isotope-tagged sample peptide in the analyzed fraction by comparison to the amount of isotope tagged standard peptide in the same fraction.
    Type: Grant
    Filed: June 4, 2003
    Date of Patent: February 2, 2010
    Assignee: The Institute for Systems Biology
    Inventor: Rudolf H. Aebersold
  • Patent number: 7651859
    Abstract: The present invention provides, as for a method for analyzing the C-terminal amino acid sequence of a peptide by using a reaction for successively releasing the C-terminal amino acids of the peptide, which method can suppress, when successively releasing the C-terminal amino acids of a peptide of long amino acid length, such a undesirable side reaction as cleavage of peptide bond in the intermediate position of the peptide and can carry out the chemical treatment thereof under widely applicable conditions, a following method wherein a dry sample of a peptide with long amino acid length is beforehand subjected to an N-acylation treatment; by using a reaction reagent where an alkanoic acid anhydride is combined with a small amount of a perfluoroalkanoic acid, successive release of C-terminal amino acids is conducted under mild conditions; a hydrolysis treatment is applied; then, selective fragmentization at site of arginine residue is performed by digestion by trypsin; thereafter, decreases in molecular weight
    Type: Grant
    Filed: December 4, 2003
    Date of Patent: January 26, 2010
    Assignee: NEC Corporation
    Inventors: Kenji Miyazaki, Akira Tsugita, Kenichi Kamijo, Takuji Nabetani
  • Patent number: 7651867
    Abstract: A method of making a test device comprised of a container divided into two chambers, each holding a volume of a clear test liquid, the chambers separated by a porous barrier. The liquid is introduced into the lower chamber by adding a liquid to the upper chamber through the open top of the container and then applying a vacuum to completely evacuate air from the lower chamber by drawing the air through the barrier and liquid in the upper chamber. Restoring air pressure forces liquid in the upper chamber into the lower chamber, to completely fill the same while leaving a volume of liquid in the upper chamber. The application of a vacuum is preferably carried out by placing the container with liquid in a receptacle containing a liquid to be boiled, heating the liquid to boil the same and thereafter condensing the vapor with the receptacle sealed to develop a very high vacuum which draws the air out from the lower chamber of the container.
    Type: Grant
    Filed: June 5, 2007
    Date of Patent: January 26, 2010
    Inventor: Gideon Eden
  • Patent number: 7651846
    Abstract: The invention features methods and compositions for diagnosis and treatment of conditions associated with decreased nitric oxide bioavailability, such as a condition associated with elevated arginase activity, using an arginine- and/or arginase-inhibitor based therapy, which therapies include administration of arginine or an arginase inhibitor, either alone or in combination. The invention also contemplates administration of magnesium with arginine, an arginase inhibitor, or with arginine-arginase inhibitor combination therapy. The invention also features methods and compositions for diagnosis, including prognosis, of conditions associated with arginase activity by assessing the ratio of arginine to ornithine in samples from a subject.
    Type: Grant
    Filed: December 1, 2004
    Date of Patent: January 26, 2010
    Assignee: Children's Hospital & Research Center at Oakland
    Inventor: Claudia R. Morris
  • Patent number: 7648840
    Abstract: The invention features methods and compositions for diagnosis, including prognosis, of conditions associated with decreased arginine bioavailability (which can result from dysregulated arginine metabolism, e.g., due to increased arginase activity) by assessing in a sample from a subject the ratio of arginine to one or more, usually two or more, modulators of arginine bioavailability. In one embodiment, the ratio of arginine to (ornithine+citrulline) is assessed to aid in diagnosis.
    Type: Grant
    Filed: December 1, 2005
    Date of Patent: January 19, 2010
    Assignees: Children's Hospital & Research Center at Oakland, The Cleveland Clinic Foundation
    Inventors: Claudia R. Morris, Stanley L. Hazen
  • Patent number: 7645613
    Abstract: Mass spectrometry techniques for determining the status of sepsis in an individual are provided. A biomarker profile resolved from a biological sample, taken from the individual, using a mass spectrometry technique is compared to a reference biomarker profile. A single such comparison classifies the individual as belonging to or not belonging to a reference population. The individual's biomarker profile and the reference biomarker profile comprise a plurality of ions each having a mass-to-charge ratio of about 100 Daltons to about 1000 Daltons. The plurality of ions can be detected by electrospray ionization mass spectrometry in positive mode. The comparison uses a decision rule, such as a classification tree, that determines the status of sepsis in the individual without requiring knowledge of the identity of the biomarkers in the biomarker profile from the individual and without requiring knowledge of the identity of the biomarkers in the reference biomarker profile.
    Type: Grant
    Filed: December 28, 2006
    Date of Patent: January 12, 2010
    Assignee: Becton, Dickinson and Company
    Inventors: Richard M. Ivey, Thomas M. Gentle, Jr., Richard L. Moore, Michael L. Towns, Gary Siuzdak, Elizabeth J. Want, Zhouxin Shen, Nicholas Bachur, Jr., Robert W. Rosenstein, James G. Nadeau, Paul E. Goldenbaum, Song Shi, Donald Copertino, James Garrett, Gregory Tice
  • Publication number: 20090318556
    Abstract: Disclosed herein are biomarkers for determining gamma radiation exposure by an animal or human. The biomarkers include 3-hydroxy-2-methylbenzoic acid 3-O-sulfate, N-hexanoylglycine, ?-thymidine, taurine, xanthine, xanthosine, 2?-deoxyuridine, 2?-deoxycytidine, 2?-deoxyxanthosine, or any salt, ion, or combination thereof. Also disclosed are methods for determining gamma radiation exposure by an animal or human, which include the step of measuring the amount of one or more biomarkers specific to gamma radiation in the biological fluid and correlating the amount of said biomarkers to the amount of gamma radiation exposure by the animal or human. Systems for determining gamma radiation exposure by an animal or human and methods of treating an animal or human for gamma radiation exposure are also disclosed.
    Type: Application
    Filed: May 15, 2008
    Publication date: December 24, 2009
    Inventors: Jeffrey R. Idle, Frank J. Gonzalez, John B. Tyburski, Kristopher W. Krausz, Andrew David Patterson
  • Publication number: 20090311696
    Abstract: Described are general means and methods of diagnosing and treating the phenotypic spectrum as well as the overlapping clinical characteristics with several forms of inherited abnormal expression and/or function of the CYP2B6 genes. In particular, polynucleotides of molecular variant CYP2B6 genes which, for example, are associated with insufficient metabolization and/or sensitively of drugs, and vectors comprising such polynucleotides are provided. Furthermore, host cells comprising such polynucleotides or vectors and their use for the production of variant CYP2B6 proteins are described. In addition, variant CYP2B6 proteins and antibodies specifically recognizing such proteins as well as transgenic non-human animals comprising the above-described polynucleotide or vectors are provided. Described are also methods for identifying and obtaining inhibitors for therapy of disorders related to the malfunction of the CYP2B6 gene as well as methods of diagnosing the status of such disorders.
    Type: Application
    Filed: March 16, 2009
    Publication date: December 17, 2009
    Applicant: Epidauros Biotechnologie AG
    Inventors: Ulrich Zanger, Thomas Lang
  • Patent number: 7632685
    Abstract: Mass spectrometry techniques for determining the status of sepsis in an individual are provided. A biomarker profile resolved from a biological sample, taken from the individual, using a mass spectrometry technique is compared to a reference biomarker profile. A single such comparison classifies the individual as belonging to or not belonging to a reference population. The individual's biomarker profile and the reference biomarker profile comprise a plurality of ions each having a mass-to-charge ratio of about 100 Daltons to about 1000 Daltons. The plurality of ions can be detected by electrospray ionization mass spectrometry in positive mode. The comparison uses a decision rule, such as a classification tree, that determines the status of sepsis in the individual without requiring knowledge of the identity of the biomarkers in the biomarker profile from the individual and without requiring knowledge of the identity of the biomarkers in the reference biomarker profile.
    Type: Grant
    Filed: December 28, 2006
    Date of Patent: December 15, 2009
    Assignee: Becton, Dickinson and Company
    Inventors: Richard M. Ivey, Thomas M. Gentle, Jr., Richard L. Moore, Michael L. Towns, Nicholas Bachur, Jr., Robert W. Rosenstein, James G. Nadeau, Paul E. Goldenbaum, Song Shi, Donald Copertino, James Garrett, Gregory Tice, Gary Siuzdak, Elizabeth Want, Zhouxin Shen
  • Publication number: 20090305321
    Abstract: The present invention relates to G protein-coupled receptors (GPCRs) and allosteric modulators thereof. More specifically, the invention relates to allosteric modulators of GPCRs that interact at an intracellular binding site. It also relates to methods for designing or identifying small molecule allosteric modulators, including assays (such as competitive binding assays) and methods employing a homology model for the GPCR intracellular site.
    Type: Application
    Filed: March 22, 2006
    Publication date: December 10, 2009
    Applicant: ASTRAZENECA AB
    Inventors: Caroline Grahames, Philip Mallinder, Fraser McIntosh, Nicholas Tomkinson, Tracey Wright
  • Publication number: 20090297494
    Abstract: The present invention generally relates to the field of neurological, physiological and psychotic dysfunctions associated with a mental disorder such as schizophrenia, or a predisposition therefor. The invention further relates to genes and proteins, which, when varied in their normal expression, their nucleic acid sequence or in their activity, are associated with the mental disorder. Accordingly, the present invention relates to methods for diagnosis and to methods for prevention and/or treatment of a mental disorder. The present invention additionally relates to compositions for use in diagnosis and to kits for diagnosis of a mental disorder. The invention also relates to the use of a protein or polynucleotide for the manufacture of a medicament for use in the treatment and/or prevention and to a pharmaceutical composition for use in prevention and/or treatment of a mental disorder. Further, the invention relates to methods for screening for a modulator of a mental disorder.
    Type: Application
    Filed: January 14, 2005
    Publication date: December 3, 2009
    Inventors: Michel Cuenod, Kim Quang Do-Cuenod, Mirjana Tosic
  • Patent number: 7626162
    Abstract: When a liquid mixture of two samples such as biological samples labeled with stable isotopes is subjected to a relative quantitative analysis using a liquid chromatography-tandem mass spectrometry system, various constituents are simultaneously ionized. Accordingly, sufficient time required for second mass spectrometry is not ensured, whereby some ions remain unanalyzed after measurement. To address this problem, after second mass spectrometry, amino acid sequencing is performed using the analysis data of the second mass spectrometry, which enables determination on the presence/absence of a specific amino acid labeled with a stable isotope. When the specific amino acid is present, the m/z value of an isotopically-labeled-paired ion in an MS spectrum is calculated, and non-target information for use in second mass spectrometry is created using the calculated m/z information.
    Type: Grant
    Filed: February 28, 2008
    Date of Patent: December 1, 2009
    Assignee: Hitachi, Ltd.
    Inventors: Shuhei Hashiba, Takeshi Sakamoto
  • Publication number: 20090270268
    Abstract: The present Invention provides novel methods for immortalizing cells that secrete antibodies of one or more specific isotypes. Polyclonal, oligoclonal, and monoclonal populations of cells obtained using the methods of the Invention can be screened on the basis of the functional and/or binding activities of the antibodies they secrete, for example directed to antigens of human or viral origin having medical interest, in cell culture conditions. Using these methods, human B cells that secrete antibodies binding human Cytomegalovirus, Herpes Simplex Virus, or HSP60 protein have been efficiently immortalized with Epstein-Barr virus.
    Type: Application
    Filed: December 15, 2006
    Publication date: October 29, 2009
    Applicant: RIBOVAX BIOTECHNOLOGIES SA
    Inventors: Ada Funaro, Gianni Garotta, Marianne Murphy
  • Patent number: 7598385
    Abstract: The present disclosure provides the asymmetric cyanine fluorescent dyes of formula I in which X, n, R1, R2, R3, R4, R5 and Y? are as defined in the specification. The present disclosure also provides conjugates of the fluorescent dyes, methods for preparation thereof, compositions comprising the fluorescent dyes, and methods for staining biological samples using the fluorescent dyes and compositions thereof.
    Type: Grant
    Filed: December 31, 2007
    Date of Patent: October 6, 2009
    Assignee: Shenzhen Mindray Biomedical Electronics Co., Ltd.
    Inventors: Xiaojun Peng, Tong Wu, Jiangli Fan, Shiguo Sun, Bingshuai Wang, Bing Xu, Jianhui Shao
  • Publication number: 20090246879
    Abstract: The invention relates to novel methods and materials for encoding and decoding information on individual molecules through the use of nano-tags, nano-barcodes, or modifications of a native molecule.
    Type: Application
    Filed: March 30, 2009
    Publication date: October 1, 2009
    Applicant: CALLIDA GENOMICS
    Inventors: Radoje T. Drmanac, Brian Hauser, Joseph Komoski
  • Patent number: 7588944
    Abstract: An analyte peptide is selectively degraded sequentially by using an alkanoic anhydride (S101). The original peptide and a series of degradation reaction products having peptide in which one or more C-terminal-sided amino acids are deleted, are subjected to a certain posttreatment (S102). The molecular weight of the reaction products is measured by mass spectrometry (S103). And, the amino acid sequence of the original peptide from C-terminal is determined, based on the molecular weight obtained by mass spectrometry (S104).
    Type: Grant
    Filed: August 24, 2004
    Date of Patent: September 15, 2009
    Assignee: NEC Corporation
    Inventors: Kenji Miyazaki, Akira Tsugita, Kenichi Kamijo
  • Publication number: 20090220948
    Abstract: A microfluidic device for analysing a fluid sample comprises at least one sample transmission channel; at least one multi-functional channel; and at least one reactor module which provides a fluid connection between the sample transmission channel and the multi-functional channel. Each reactor module comprises at least one reaction chamber, having at least one inlet in fluid communication with the sample transmission channel(s); and at least one fluid isolation chamber, which is in fluid communication with the outlet(s) of the reaction chamber(s). The fluid isolation chamber serves to isolate the fluid sample from the multi-functional channel(s).
    Type: Application
    Filed: March 16, 2005
    Publication date: September 3, 2009
    Applicant: ATTOGENIX BIOSYSTEMS PTE LTD.
    Inventors: Dominador Fortaleza Oviso, Dor Ngi Ting
  • Publication number: 20090203618
    Abstract: The present invention refers to analog compounds of peptides having the amino acid sequences SEQ ID NO: 1, SEQ ID NO: 2, SEQ ID NO: 3 or SEQ ID NO: 4, including analgesic peptides derived from snakes of species such as Crotalus durissus terrificus; their uses in the treatment, diagnosis and prevention of painful conditions or mediated by opioid receptors, their pharmaceutical compositions and their methods of preparation and purification, including their uses in the identification of analgesic compounds.
    Type: Application
    Filed: May 6, 2005
    Publication date: August 13, 2009
    Inventors: Yara Cury, Gisele Picolo, Katsuhiro Konno, Renata Giorgi, Patricia Brigatte, Vanessa Gutierrez, Antonio Camargo
  • Publication number: 20090197345
    Abstract: The invention relates to method for quantification of the absolute amount of allergen in an allergen sample comprising: a) providing a known amount of one or more allergen calibration standard peptide(s) having a sequence of amino acids which is identical with, and optionally unique for, a sequence to be found in the allergen to be quantified and optionally labelling said allergen calibration standard peptide(s), b) degrading the allergen sample to obtain a mixture of peptides, and optionally labelling said peptides with one or more labelling agent(s), wherein at least the peptides in the degraded allergen sample or the calibration standard peptides are labelled, and if both the peptides in the degraded allergen sample and the allergen calibration standard peptide(s) are labelled, the labelling agent(s) used for labelling the allergen calibration standard peptide(s) are different from the labelling agent(s) used for labelling the peptides of the degraded allergen sample, c) quantifying the absolute amount of
    Type: Application
    Filed: September 1, 2006
    Publication date: August 6, 2009
    Applicant: ALK-ABELLO A/S
    Inventor: Ulla Seppala
  • Patent number: 7544518
    Abstract: Analytical reagents and mass spectrometry-based methods using these reagents for the rapid, and quantitative analysis of proteins or protein function in mixtures of proteins. The methods employ affinity labeled protein reactive reagents having three portions: an affinity label (A) covalently linked to a protein reactive group (PRG) through a linker group (L). The linker may be differentially isotopically labeled, e.g., by substitution of one or more atoms in the linker with a stable isotope thereof. These reagents allow for the selective isolation of peptide fragments or the products of reaction with a given protein (e.g., products of enzymatic reaction) from complex mixtures. The isolated peptide fragments or reaction products are characteristic of the presence of a protein or the presence of a protein function in those mixtures. Isolated peptides or reaction products are characterized by mass spectrometric (MS) techniques.
    Type: Grant
    Filed: November 23, 2004
    Date of Patent: June 9, 2009
    Assignee: University of Washington
    Inventors: Rudolf Hans Aebersold, Michael H. Gelb, Steven P. Gygi, C. Ronald Scott, Frantisek Turecek, Scott A. Gerber, Beate Rist
  • Publication number: 20090142851
    Abstract: The present invention provides a method for specifically recovering a C-terminal peptide fragment, and a method for easily determining the sequence of a C-terminal peptide fragment, which is difficult to be determined by a conventional method, with the use of a mass spectrometer, in particular a method capable of de novo sequencing of a C-terminal peptide fragment. A method for selectively recovering a C-terminal peptide of a protein, comprising the steps of: in a cleavage product of a protein containing a C-terminal peptide fragment (A) having an ?-amino group but not having an ?-amino group and the other peptide fragments (B) having an ?-amino group and an ?-amino group, selectively modifying the ?-amino groups to obtain a C-terminal peptide fragment modified (A?) and the other peptide fragments modified (B?); and separating the C-terminal peptide fragment modified (A?) from the modified cleavage product by allowing a carrier to hold the other peptide fragments modified (B?) via the ?-amino group.
    Type: Application
    Filed: November 28, 2008
    Publication date: June 4, 2009
    Inventors: Keisuke Shima, Minoru Yamaguchi, Hiroki Kuyama, Eiji Ando, Osamu Nishimura, Susumu Tsunasawa, Kazuhiro Sonomura
  • Publication number: 20090131277
    Abstract: The present invention relates to novel mimetopes of anti-PSMA antibodies and their use for detecting, imaging, staging, treating and monitoring of prostate cancer, and/or metastatis thereof. The present invention also relates to novel pharmaceutical compositions for the treatment of prostate cancer. Furthermore the present invention relates to assay systems and kits for detecting, imaging, staging, treating and monitoring of prostate cancer, and/or metastasis thereof.
    Type: Application
    Filed: April 19, 2005
    Publication date: May 21, 2009
    Applicant: PROSCAN RX PHARMA
    Inventors: Claudio Cuello, Uri Saragovi, Pierre Du Ruisseau, Phil Gold, Serge Moffett
  • Publication number: 20090130770
    Abstract: The present invention relates to a novel biomarker which can be used to determine the extent of interference of a substance with the farnesyl pathway.
    Type: Application
    Filed: March 28, 2007
    Publication date: May 21, 2009
    Inventors: Frank Dieterle, Goetz Schlotterbeck, Hans Senn, Laura Suter-Dick
  • Publication number: 20090130655
    Abstract: The invention discloses a detection method using nanoaggregate-embedded beads and system thereof, which are characterized in that the nanoaggregate of Raman dye and metal nanoparticles is coated by an inorganic oxide to form a nanoaggregate-embedded bead, and which is then conjugated with a probe molecule to form a sensor bead. The Raman spectra of the product formed by binding of the sensor bead and an analyte in a sample is detected for determining whether the analyte exists in the sample. In embodiment, the pH of the solution of metal nanoparticles is controlled to keep at 10, and the concentration of the Raman dye is controlled to keep between 1×10?6M and 2×10?6M for reducing the size of the nanoaggregate.
    Type: Application
    Filed: November 14, 2008
    Publication date: May 21, 2009
    Applicant: NATIONAL CHUNG CHENG UNIVERSITY
    Inventors: Laikwan Chau, Tzyy-Schiuan Yang, Ping-Ji Huang, Tai-Tsung Lin
  • Publication number: 20090124018
    Abstract: The invention relates to the chemical-pharmaceutical industry and specifically to mix for quality control of the medicine “Glycine tablets for sublingual applying 0.1” and its preparation method. The method involves process of analysis by dissolution of 2.5 g of porphyrized tablets in 250 ml of purified water and light transmission spectrophotometer examination at a wave length of 700±2 in a cuvet with layer thickness of 10 mm relative to purified water Process of dissolution takes 20 minutes and is carried out at a temperature of 370° C. in the apparatus for dissolving determination at a paddle rotation speed of 150 rpm. After mix is dissolved it is allowed for 10 minutes then there are selected 4 ml for light transmission analysis. Mix for quality control includes water in a ratio 100:1 to porphyrized tablets, containing in one tablet 0.101 g microcapsules of non-agglomerated crystals of amino-acetic acid covered with polymeric film of water-soluble methylcellulose, MC-100 and 0.001 g of magnesium stearate.
    Type: Application
    Filed: December 15, 2006
    Publication date: May 14, 2009
    Inventors: Irina Alekseevna Komissarova, Tatyana Dmitrievna Soldatenkova, Yulia Vasilievna Gudkova, Tatyana Tikhonovna Kondrashova, Natalia Mikhaylovna Burbenskaya
  • Publication number: 20090061472
    Abstract: Methods for characterizing the near term risk of experiencing a major adverse cardiac event in a patient presenting with chest pain are provided. In one embodiment the method comprises determining the level of myeloperoxidase (MPO) activity in a bodily sample obtained from the patient. In another embodiment, the method comprises determining the level of MPO mass in a bodily sample obtained from the patient. In another embodiment, the method comprises determining the level of one or more select MPO-generated oxidation products in a bodily sample obtained from the patient. The select MPO-generated oxidation products are dityrosine, nitrotyrosine, chlorotyrosine, methionine sulphoxide or an MPO-generated lipid peroxidation product.
    Type: Application
    Filed: November 5, 2008
    Publication date: March 5, 2009
    Applicant: THE CLEVELAND CLINIC FOUNDATION
    Inventors: Stanley L. Hazen, Marc S. Penn, Renliang Zhang
  • Publication number: 20090053689
    Abstract: The present invention relates to a device and an apparatus device for processing a biological and/or chemical sample. The device comprises at least one sample processing chamber having an inlet at a first end and a penetrable sealing layer at a second end that forms at least a part of an inner wall of the sample processing chamber. The sealing layer is adapted to seal off the sample processing chamber from the environment until said sealing layer is penetrated to form an outlet. The device and apparatus also includes an absorption layer, wherein upon penetration of said sealing layer, said absorption layer is in fluid contact with said sealing layer and is capable of absorbing fluid released from said sample processing chamber, via the outlet. The present invention also relates to a fluid separation device. The fluid separation device comprises a penetrable sealing layer adapted to form a wall of a sample processing chamber of the device of the invention.
    Type: Application
    Filed: July 19, 2005
    Publication date: February 26, 2009
    Applicant: ATTOGENIX BIOSYSTEMS PTE. LTD
    Inventors: Dominador Fortaleza Oviso, JR., Dor Ngi Ting, Farid Ghadessy, Hui Wang, Wen Jian Lau
  • Publication number: 20090053721
    Abstract: The present invention provides novel methods and compositions for identifying ion channel modulating compounds, including atrial-selective antiarrhythmic agents and ion channel modulating compounds that preferentially modulate K+ channels. The ion channel modulating compounds identified according to these methods are associated with a reduced incidence of ventricular proarrhythmia.
    Type: Application
    Filed: August 8, 2008
    Publication date: February 26, 2009
    Applicant: CARDIOME PHARMA CORP.
    Inventor: David Fedida
  • Patent number: 7494815
    Abstract: The present invention provides a method and apparatus for analyzing compounds with amino group(s) contained in biological organisms. In this method, a compound with amino group(s) is derivatized and then the derivative of the compound with amino group(s) is eluted by liquid chromatography using a stepwise elution means on a concentration gradient. Subsequently, the derivative of the compound with amino group(s) eluted from the liquid chromatography is detected by mass spectrometry.
    Type: Grant
    Filed: November 27, 2006
    Date of Patent: February 24, 2009
    Assignee: Ajinomoto Co., Inc.
    Inventors: Kazutaka Shimbo, Takashi Ohnuki, Hiroshi Miyano
  • Publication number: 20090017546
    Abstract: The present invention provides novel reactive fluorescent compounds that incorporate stable isotopic (deuterium, 13-carbon, 15-nitrogen, 18-oxygen) substitutions. The invention includes the use of these compounds, in combination with non-isotopically substituted analogs, for the purification, identification and relative quantification of proteins, peptides, saccharides, metabolites, and other biologically important compounds by combining liquid chromatography (LC) and mass spectrometry (MS). Fluorescent labeling of target compounds in this manner provides orders-of-magnitude sensitivity enhancement over traditional stable isotope labels, and also affords the possibility of simultaneous multiplexed analysis due to the multiwavelength nature of different fluorophores.
    Type: Application
    Filed: July 21, 2008
    Publication date: January 15, 2009
    Applicant: INVITROGEN CORPORATION
    Inventors: Brian Agnew, Kyle Richard Gee
  • Patent number: 7470540
    Abstract: A method for preparing receptor-coated particles is described which comprises the following steps: a) providing a support body, b) conducting a liquid containing particles into or onto the support body, c) immobilizing the particles on at least one surface area of the support body, d) conducting a liquid which contains receptors or receptor building blocks for synthesizing polymeric receptors over the immobilized particles, e) coupling the receptors or receptor building blocks location—or/and time-specifically to the immobilized particles at in each case predetermined positions of the support body, f) repeating, where appropriate, the steps (d) and (e), until the desired receptors have been synthesized on the immobilized particles at the in each case predetermined positions of the support body.
    Type: Grant
    Filed: October 17, 2001
    Date of Patent: December 30, 2008
    Assignee: Febit AG
    Inventors: Cord F. Stähler, Ramon Güimil, Matthias Scheffler, Peer F. Stähler, Anke Heidbrede
  • Publication number: 20080318327
    Abstract: The present invention relates to a kit for mass labelling of peptides in two or more samples, comprising a set of mass tagging reagents for reaction at the N-terminals of the peptides and a set of mass balancing reagents for reaction at the C-terminals of the peptides, or vice versa, and wherein each mass tagging reagent in the set is matched with mass balancing reagent(s) in such a way that the sum of the masses from all matched mass tagging and mass balancing reagents is equal. The invention also relates to a method of using said mass labels and a database for use in said method.
    Type: Application
    Filed: December 11, 2006
    Publication date: December 25, 2008
    Applicant: GE HEALTHCARE BIO-SCIENCES AB
    Inventors: Bengt Bjellqvist, David Fenyo, Henrik Neu, Jesper Hedberg
  • Publication number: 20080318262
    Abstract: The present invention relates to the methods of identifying and quantifying polypeptides in a given sample by mass spectrometric analysis. More specifically, the invention provides the methods for sample preparation for proteomic analysis: the methods for the fragmentation of proteins into peptides with the specific cleavage rule (cleavage at amino-terminal or carboxyl-terminal of aspartic acid), which are suitable for the analysis by mass spectrometry apparatus.
    Type: Application
    Filed: September 14, 2005
    Publication date: December 25, 2008
    Applicant: Sigmol, Inc.
    Inventors: Joseph Kwon, Taehoon Lee
  • Publication number: 20080317835
    Abstract: Assays are preformed to determine nutrient deficiency levels in an individual to address the deficiencies and improve health and longevity. Nutraceutical and cosmeceutical products containing nanoencapsulated active ingredients are provided, in addition to dietary, exercise, sleep, and other lifestyle recommendations.
    Type: Application
    Filed: June 20, 2007
    Publication date: December 25, 2008
    Inventors: Nazli Azimi, Mohammad Saeed Kharazmi
  • Patent number: 7462489
    Abstract: The present invention provides methods for identifying candidate biomarkers in the plasma microparticle proteome. It also provides methods for isolating, identifying, and analyzing microparticles derived from plasma, particularly platelet-poor plasma.
    Type: Grant
    Filed: November 5, 2007
    Date of Patent: December 9, 2008
    Inventors: Klaus F. Ley, David M. Smalley
  • Publication number: 20080293627
    Abstract: A mutated TSHR preparation which includes at least one point mutation characterised in that at least amino acid Arg at a position corresponding to amino acid 255 of a full length human TSHR has been mutated to a different amino acid residue in said mutated TSHR preparation, whereby said mutated TSHR preparation differentially interacts with patient serum stimulating TSHR autoantibodies, patient serum blocking TSHR autoantibodies and TSH, in that (i) the stimulatory effect of patient serum stimulating TSHR autoantibodies interacting with the mutated TSHR preparation is substantially reduced or essentially abolished, when compared to the stimulatory effect of the patient serum stimulating TSHR autoantibodies interacting with a reference TSHR preparation which has an amino acid sequence corresponding to that of said mutated TSHR preparation with the exception that said mutation of Arg at a position corresponding to amino acid 255 of a full length human TSHR is not present in said reference TSHR preparation, (ii)
    Type: Application
    Filed: August 3, 2005
    Publication date: November 27, 2008
    Applicant: RSR LIMITED
    Inventors: Bernard Rees Smith, Jadwiga Furmaniak, Jane Sanders
  • Publication number: 20080274556
    Abstract: Methods of evaluating molecular isomers of branched-chain amino acids are featured. The methods can include: derivatizing one or more molecular isomers of branched-chain amino acids in a sample comprising a branched-chain amino acid labeled with one or more heavy atoms as a first standard; adding, to the sample, after derivatization, a nonderivatized or derivatized branched chain amino acid that is labeled with one or more heavy atoms, as a second standard; evaluating the sample using tandem mass spectrometry; and detecting peaks indicative of derivatized and nonderivatized forms of one or more branched-chain amino acids in the sample.
    Type: Application
    Filed: May 4, 2007
    Publication date: November 6, 2008
    Applicant: PerkinElmer LAS, Inc.
    Inventors: Blas Cerda, Alex Cherkasskiy, Yijun Li
  • Publication number: 20080261317
    Abstract: The disclosed methods address the identification of myocardial ischemia and myocardial infarction using metabolomics, as well as the identification of metabolic products whose differential expression over time is indicative of myocardial ischemia and/or myocardial infarction.
    Type: Application
    Filed: September 6, 2005
    Publication date: October 23, 2008
    Inventors: Michael A. Fifer, Marc S. Sabatine, Robert Gerszten
  • Publication number: 20080261250
    Abstract: The present invention relates to diagnostic tests, methods and kits that are useful to assess a subject's risk of developing a pathologic condition related in part to the presence of HDL oxidation product. Measuring the quantity of one or more HDL oxidation products present in the blood is useful in evaluating risk for developing or evaluating the severity of a disease or evaluating response to treatment for such a disease as, for instance, cardiovascular disease.
    Type: Application
    Filed: July 19, 2005
    Publication date: October 23, 2008
    Applicant: UNIVERSITY OF WASHINGTON
    Inventors: Jay W. Heinecke, John F. Oram
  • Publication number: 20080248585
    Abstract: A fast and sensitive method and device for protein sequencing are disclosed. The method uses a combination of Edman degradation chemistry and mass spectrometry to sequence proteins and polypeptides. A peptide degradation reaction is performed on a polypeptide or protein ion reactant in the gas phase. The reaction yields a first ion product corresponding to a first amino acid residue of the polypeptide or protein reactant and a polypeptide or protein fragment ion. The mass-to-charge ratio for the first ion product, or the polypeptide or protein fragment ion, or both, is then determined. The first amino acid residue of the polypeptide or protein reactant is then identified from the mass-to-charge ratio so determined.
    Type: Application
    Filed: July 15, 2005
    Publication date: October 9, 2008
    Applicant: WISCONSIN ALUMNI RESEARCH FOUNDATION
    Inventors: Xiaoyu Chen, Michael S. Westphall, Lloyd M. Smith, Brian L. Frey
  • Patent number: 7432108
    Abstract: A method for analyzing a plurality of amino acids in a fluid sample by a user is provided comprising the steps of introducing the sample into a buffer solution, passing the sample in the buffer solution through a separation column and setting a lithium ion concentration in the buffer to no more than 0.3 mols/L up to a time before ?-aminoisobutyric acid (?-AiBA) is eluted.
    Type: Grant
    Filed: February 17, 2006
    Date of Patent: October 7, 2008
    Assignee: Hitachi, Ltd.
    Inventors: Yoshio Fujii, Masahito Ito, Kimiyoshi Koda
  • Patent number: 7429727
    Abstract: The disclosed technology relates to the analysis of dissociation spectrum data that includes spectral peaks that represent fragments of a parent ion. The parent ion includes molecular subunits that are connected at cleavage sites. The technology accesses the dissociation spectrum data and determines a reference mass of one of the fragments where at least one of the molecular subunits in the fragment is unknown. The technology also selects a candidate parent ion description from a database of molecule descriptions where a computed ion mass of the candidate parent ion description matches the reference mass and scores the candidate parent ion description.
    Type: Grant
    Filed: December 13, 2005
    Date of Patent: September 30, 2008
    Inventor: Marshall W. Bern
  • Patent number: 7422848
    Abstract: The present invention relates generally to the field of Hepatitis B variants exhibiting a reduced sensitivity to nucleoside analogues, both in vivo and in vitro. More in particular, reverse transcriptase mutant rtA181S is provided. Present invention provides assays and methods for detecting such variant, which assays are useful in monitoring anti-viral therapeutic regimes and adjusting patient therapy. A diagnostic kit for detecting the presence of an HBV variant in a biological sample has also been described.
    Type: Grant
    Filed: March 15, 2006
    Date of Patent: September 9, 2008
    Assignee: Innogenetics N.V.
    Inventor: Mithat Bozdayi
  • Publication number: 20080213911
    Abstract: An analyte peptide is selectively degraded sequentially by using an alkanoic anhydride (S101). The original peptide and a series of degradation reaction products having peptide in which one or more C-terminal-sided amino acids are deleted, are subjected to a certain posttreatment (S102). The molecular weight of the reaction products is measured by mass spectrometry (S103). And, the amino acid sequence of the original peptide from C-terminal is determined, based on the molecular weight obtained by mass spectrometry (S104).
    Type: Application
    Filed: August 24, 2004
    Publication date: September 4, 2008
    Inventors: Kenji Miyazaki, Akira Tsugita, Kenichi Kamijo
  • Patent number: 7413906
    Abstract: In proteomic research, it is often necessary to screen a large number of polypeptides for the presence of stable structure. Described herein are methods (referred to as MALDI MS-HX and SUPREX) for measuring the stability of proteins in a rapid, high-throughput fashion. The method employs hydrogen exchange to estimate the stability of quantities of unpurified protein extracts, using matrix-assisted laser desorption/ionization (MALDI) mass spectrometry. A method of quantitatively determining the stability of a test protein under native conditions is disclosed.
    Type: Grant
    Filed: December 5, 2006
    Date of Patent: August 19, 2008
    Assignee: Duke University
    Inventors: Terence G. Oas, Sina Ghaemmaghami, Kendall D. Powell, Michael C. Fitzgerald
  • Publication number: 20080182811
    Abstract: Amino acids other than glutamic acid are used as a metabotropic glutamate receptor activator. More preferably, aspartic acid, valine and cysteine are used as a group I metabotropic glutamate receptor activator; alanine, arginine, asparagine, aspartic acid, cysteine, glutamine, glycine, histidine, isoleucine, leucine, lysine, methionine, phenylalanine, proline, serine, threonine, tryptophan, tyrosine, valine, ornithine, taurine and hydroxyproline are used as a group II metabotropic glutamate receptor activator; and cysteine is used as a group III metabotropic glutamate receptor activator.
    Type: Application
    Filed: December 21, 2007
    Publication date: July 31, 2008
    Applicant: Ajinomoto Co., Inc.
    Inventors: Takeaki Ohsu, Sen Takeshita, Mitsuo Takahashi, Yuzuru Eto