Patents by Inventor David Yu

David Yu has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Patent number: 10036059
    Abstract: Provided herein are primers and primer systems having improved specificity and kinetics over existing primers, and methods of use thereof.
    Type: Grant
    Filed: November 25, 2014
    Date of Patent: July 31, 2018
    Assignee: President and Fellows of Harvard College
    Inventors: David Yu Zhang, Peng Yin
  • Publication number: 20180191806
    Abstract: Systems, methods, and non-transitory computer readable media can receive a request to upload a file from a user. A server of a plurality of servers can be determined to process the request to upload the file. An indication of an amount of the file that has been received by the server prior to the request to upload the file can be provided. At least a portion of the file that has not been received by the server prior to the request to upload the file can be received.
    Type: Application
    Filed: December 30, 2016
    Publication date: July 5, 2018
    Inventors: Eran Ambar, Trevor Charles Armstrong, David Yu Zhang
  • Patent number: 10015082
    Abstract: A device receives traffic; identifies an address associated with the traffic; determines whether the address is associated with an aggregate interface, the aggregate interface being associated with a first port and a second port. The first port corresponds to a first node in a first state, that indicates that the first node is available to forward the traffic, and the second port corresponds to a second node in a second state, that indicates that that the second node is not available to forward the traffic. The device transmits the traffic to the first node via the first port and to the second node, via the second port, when the address is associated with the aggregate interface. Transmitting the traffic enables the second node to forward the traffic when the first node changes from the first state to the second state.
    Type: Grant
    Filed: July 31, 2015
    Date of Patent: July 3, 2018
    Assignee: Juniper Networks, Inc.
    Inventors: Dongyi Jiang, Jin Shang, David Yu, Tsai-Zong Lin, Chih-Wei Chao
  • Publication number: 20180179588
    Abstract: This invention describes a method of controlling the hybridization yield of nucleic acid probes by adjusting the relative concentrations of auxiliary oligonucleotides to the probes and the targets. The auxiliary oligonucleotide is partially or fully complementary to either the probe or the target, and is released upon hybridization of the probe to the target.
    Type: Application
    Filed: October 16, 2017
    Publication date: June 28, 2018
    Inventors: David Yu Zhang, Ruojia Wu, Juexiao Wang
  • Publication number: 20180023454
    Abstract: A piston for an engine is provided. The piston includes a body having a crown disposed about a central axis. The crown includes an inner circumference and an outer circumference. The piston includes a central chamber transversely disposed within the body and recessed with respect to the crown. The piston includes a central mound disposed within the central chamber about the central axis. The piston also includes a bowl extending from the central mound towards the crown. The piston further includes a passageway provided on the inner circumference of the crown. The passageway includes a slot defined by a first surface inclined at a first angle with respect to the central axis. The slot is adapted to allow flow of a fuel from the central chamber towards the outer circumference of the crown.
    Type: Application
    Filed: July 25, 2016
    Publication date: January 25, 2018
    Applicant: Caterpillar Inc.
    Inventors: Weidong Gong, David Yu-Zhang Chang
  • Publication number: 20170327888
    Abstract: Aspects of the present disclosure relate to systems, kits and methods that comprise a nucleic acid capture strand linked to a first dye molecule, a nucleic acid trigger strand longer than the capture strand and comprising (a) a capture domain that is complementary to the capture strand and (b) at least two concatenated domains, each of which comprises two subdomains, and a partially double-stranded nucleic acid comprising a single-stranded toehold domain having a nucleotide sequence complementary to one of the subdomains of the two subdomains of the concatenated domains, a double-stranded region linked to a second dye molecule and having a nucleotide sequence complementary to the other of the two subdomains of the concatenated domains, and a single-stranded hairpin loop having a nucleotide sequence that is complementary to the single-stranded toehold domain.
    Type: Application
    Filed: June 14, 2017
    Publication date: November 16, 2017
    Applicant: President and Fellows of Harvard College
    Inventors: Luvena L. Ong, David Yu Zhang, Diming Wei, Ralf Jungmann, Peng Yin
  • Patent number: 9796748
    Abstract: The invention provides systems and methods for spatial sequestration of elements in nucleic acid circuits.
    Type: Grant
    Filed: May 2, 2012
    Date of Patent: October 24, 2017
    Assignee: President and Fellows of Harvard College
    Inventors: Thomas E. Schaus, David Yu Zhang, Wei Sun, Peng Yin
  • Publication number: 20170302651
    Abstract: Access is controlled to managed resources in a stateless web server architecture including a stateless web server computing platform; a resource locator map portion of the stateless web server computing platform providing a unique resource locator code representing each managed resource in a stateless web server architecture, wherein the managed resource is assigned to a plurality of application program components; a set of servlet filters disposed in a portion of the stateless web server computing platform, each servlet filter associated with one of the application program components; a resource locator matcher portion of the stateless web server computing platform, responsive to a user request to a unique resource locator, matching a pattern in the user request to one or more of the application program components using a corresponding servlet filter; and a request dispatcher portion of the stateless web server computing platform sending the user request to the matched application program component, wherein
    Type: Application
    Filed: June 20, 2017
    Publication date: October 19, 2017
    Inventors: David Yu Chang, John Yow-Chun Chang, Vishwanath Venkataramappa
  • Patent number: 9722995
    Abstract: Access is controlled to managed resources in a stateless web server architecture including a stateless web server computing platform; a resource locator map portion of the stateless web server computing platform providing a unique resource locator code representing each managed resource in a stateless web server architecture, wherein the managed resource is assigned to a plurality of application program components; a set of servlet filters disposed in a portion of the stateless web server computing platform, each servlet filter associated with one of the application program components; a resource locator matcher portion of the stateless web server computing platform, responsive to a user request to a unique resource locator, matching a pattern in the user request to one or more of the application program components using a corresponding servlet filter; and a request dispatcher portion of the stateless web server computing platform sending the user request to the matched application program component, wherein
    Type: Grant
    Filed: January 9, 2015
    Date of Patent: August 1, 2017
    Assignee: International Business Machines Corporation
    Inventors: David Yu Chang, John Yow-Chun Chang, Vishwanath Venkataramappa
  • Patent number: 9617392
    Abstract: The invention provides compositions and methods relating to self-assembly of structures of various size and shape complexity. The composition include synthetic single-stranded polymers having a backbone and pre-determined linear arrangement of monomers.
    Type: Grant
    Filed: July 10, 2012
    Date of Patent: April 11, 2017
    Assignee: President and Fellows of Harvard College
    Inventors: Thomas E. Schaus, Peng Yin, Wei Sun, David Yu Zhang
  • Publication number: 20170067090
    Abstract: The present invention provides an oligonucleotide composition including a blocker and a first primer oligonucleotide. The blocker oligonucleotide includes a first sequence having a target-neutral subsequence and a blocker variable subsequence. The non-target specific subsequence is flanked on its 3? and 5? ends by the target-neutral subsequence and is continuous with the target-neutral subsequence. The first primer oligonucleotide is sufficient to induce enzymatic extension; herein the first primer oligonucleotide includes a second sequence. The second sequence overlaps with the 5? end of the target-neutral subsequence by at least 5 nucleotides; herein the second sequence includes an overlapping subsequence and a non-overlapping subsequence. The second sequence does not include the non-target specific subsequence.
    Type: Application
    Filed: November 18, 2016
    Publication date: March 9, 2017
    Inventors: David Yu Zhang, Ruojia Wu, Juexiao Wang
  • Publication number: 20170029875
    Abstract: The present disclosure describes the thermodynamic design and concentrations necessary to design probe compositions with desired optimal specificity that enable enrichment, detection, quantitation, purification, imaging, and amplification of rare-allele-bearing species of nucleic acids (prevalence <1%) in a large stoichiometric excess of a dominant-allele-bearing species (wildtype). Being an enzyme-free and homogeneous nucleic acid enrichment composition, this technology is broadly compatible with nearly all nucleic acid-based biotechnology, including plate reader and fluorimeter readout of nucleic acids, microarrays, PCR and other enzymatic amplification reactions, fluorescence barcoding, nanoparticle-based purification and quantitation, and in situ hybridization imaging technologies.
    Type: Application
    Filed: October 17, 2016
    Publication date: February 2, 2017
    Inventors: David Yu Zhang, Juexiao Wang
  • Publication number: 20160340727
    Abstract: Compositions and methods for highly specific nucleic acid probes and primers are provided. The probe system comprises a complement strand and a protector stand that form a partially double-stranded probe. The reaction standard free energy of hybridization between the probe and target nucleic acid as determined by Expression 1 (?G°rxn=?G°t-TC??G°nh-PC+(?G°v-TC??G°h-PC)) is from about ?4 kcal/mol to about +4 kcal/mol. Alternatively, the reaction standard free energy of hybridization between the probe and target nucleic acid is determined by Expression 1 to be within 5 kcal/mol of the standard free energy as determined by Expression 2 (?R? ln(([P]0?[C]0)/[C]0)]), where the [P]0 term of Expression 2 equals the concentration of the protector strand and the [C]0 term of Expression 2 equals the concentration of the complement strand. In addition, a method for on-the-fly fine tuning of a reaction using the present probe is provided.
    Type: Application
    Filed: June 6, 2016
    Publication date: November 24, 2016
    Inventors: David Yu Zhang, Juexiao Wang, Ruojia Wu
  • Publication number: 20160326600
    Abstract: Nucleic acid probes are described comprising a universal component and a target dependent component. The universal component provides an economical advantage in that the universal component can retain any desired functional moiety, such as a fluorophore or other label which can be used with any target dependent component. Thus, the cost of designing target specific functionalized probes is significantly reduced with this probe system by limiting de novo synthesis to only the target dependent component of the probe for each desired target nucleic acid. Furthermore, the probe design of the present disclosure provides high target specificity demonstrating selective binding of the target in a 1% target load sample.
    Type: Application
    Filed: July 21, 2016
    Publication date: November 10, 2016
    Inventors: DAVID YU ZHANG, JUEXIAO WANG
  • Publication number: 20160153036
    Abstract: The present disclosure provides, in various aspects and embodiments, methods and compositions for selectively amplifying a rare target nucleic acid and/or suppressing amplification of non-target nucleic acids with sequences similar to the rare target nucleic acid. The methods and composition are useful, for example, for detecting rare alleles among a population of wild-type alleles.
    Type: Application
    Filed: July 18, 2014
    Publication date: June 2, 2016
    Applicant: President and Fellows of Harvard College
    Inventors: Xi Chen, David Yu Zhang, Peng Yin
  • Patent number: 9332075
    Abstract: A method performed by a network appliance having a plurality of application processing units, includes: receiving a first packet at the network appliance; calculating a first value using a mathematical algorithm based on one or more information regarding the first packet; and using the calculated first value to identify a first application processing unit of the plurality of application processing units in the network appliance. A network appliance includes: a plurality of processing units that are communicatively connected to each other; wherein a first processing unit of the plurality of processing units is configured for: calculating a first value using a mathematical algorithm based on one or more information regarding a first packet; and using the calculated first value to identify a second processing unit of the plurality of processing units.
    Type: Grant
    Filed: March 15, 2013
    Date of Patent: May 3, 2016
    Assignee: Hillstone Networks, Corp.
    Inventors: Dongyi Jiang, Jin Shang, David Yu, Michael Lin, Jun Xie, Ye Zhang
  • Patent number: 9311123
    Abstract: A method performed by a network system having a plurality of processing units implemented using a plurality of respective virtual machines, includes: receiving a first packet at a first virtual machine of the plurality of virtual machines, wherein the first virtual machine is configured to receive the first packet from a network through an interface and has session processing capability; calculating a first value using a mathematical algorithm based on one or more information regarding the first packet; and using the calculated first value to identify a second virtual machine of the plurality of virtual machines in the network system.
    Type: Grant
    Filed: July 2, 2013
    Date of Patent: April 12, 2016
    Assignee: Hillstone Networks, Corp.
    Inventors: Dongyi Jiang, Jin Shang, David Yu, Michael Lin, Jun Xie, Ye Zhang, Mike Ji
  • Patent number: 9288214
    Abstract: An authentication and authorization plug-in model for a cloud computing environment enables cloud customers to retain control over their enterprise information when their applications are deployed in the cloud. The cloud service provider provides a pluggable interface for customer security modules. When a customer deploys an application, the cloud environment administrator allocates a resource group for the customer's application and data. The customer registers its own authentication and authorization security module with the cloud security service, and that security module is then used to control what persons or entities can access information associated with the deployed application. To further balance the rights of the various parties, a third party notary service protects the privacy and the access right of the customer when its application and information are deployed in the cloud.
    Type: Grant
    Filed: June 30, 2014
    Date of Patent: March 15, 2016
    Assignee: International Business Machines Corporation
    Inventors: David Yu Chang, Messaoud Benantar, John Yow-Chun Chang, Vishwanath Venkataramappa
  • Patent number: 9284602
    Abstract: Provided herein are primers and primer systems having improved specificity and kinetics over existing primers, and methods of use thereof.
    Type: Grant
    Filed: October 27, 2011
    Date of Patent: March 15, 2016
    Assignee: President and Fellows of Harvard College
    Inventors: David Yu Zhang, Peng Yin
  • Publication number: 20150341257
    Abstract: A device receives traffic; identifies an address associated with the traffic; determines whether the address is associated with an aggregate interface, the aggregate interface being associated with a first port and a second port. The first port corresponds to a first node in a first state, that indicates that the first node is available to forward the traffic, and the second port corresponds to a second node in a second state, that indicates that that the second node is not available to forward the traffic. The device transmits the traffic to the first node via the first port and to the second node, via the second port, when the address is associated with the aggregate interface. Transmitting the traffic enables the second node to forward the traffic when the first node changes from the first state to the second state.
    Type: Application
    Filed: July 31, 2015
    Publication date: November 26, 2015
    Inventors: Dongyi JIANG, Jin SHANG, David YU, Tsai-Zong LIN, Chih-Wei CHAO