Patents by Inventor Edward Stuart

Edward Stuart has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Patent number: 10059990
    Abstract: The invention provides in situ nucleic acid sequencing to be conducted in biological specimens that have been physically expanded. The invention leverages the techniques for expansion microscopy (ExM) to provide new methods for in situ sequencing of nucleic acids as well as new methods for fluorescent in situ sequencing (FISSEQ) in a new process referred to herein as “expansion sequencing” (ExSEQ).
    Type: Grant
    Filed: April 14, 2016
    Date of Patent: August 28, 2018
    Assignee: Massachusetts Institute of Technology
    Inventors: Edward Stuart Boyden, Fei Chen, Shahar Alon, George Church, Paul Warren Tillberg, Adam Marblestone, Evan Daugharthy
  • Publication number: 20180216161
    Abstract: The present invention relates to a method for amplifying at least one target RNA in a fixed and, optionally, expanded biological sample. In an embodiment of the invention, the method comprises incubating the fixed biological sample with a pair of polynucleotides complementary to non-overlapping and proximal sequences of a target RNA, wherein the polynucleotide pair hybridizes to the target RNA; ligating the polynucleotide pair using a ligase; and amplifying the ligation product. The invention further provides methods for detecting and optionally quantifying and/or sequencing the amplification product. As the method comprises hybridizing polynucleotide pairs to a target RNA in a fixed biological sample, the target RNA can be hybridized in situ.
    Type: Application
    Filed: January 22, 2018
    Publication date: August 2, 2018
    Inventors: Fei Chen, Asmamaw T. Wassie, Shahar Alon, Adam Henry Marblestone, Anubhav Sinha, Andrew Payne, Edward Stuart Boyden
  • Publication number: 20180119219
    Abstract: The invention provides in situ nucleic acid sequencing to be conducted in biological specimens that have been physically expanded. The invention leverages the techniques for expansion microscopy (ExM) to provide new methods for in situ sequencing of nucleic acids in a process referred to herein as “expansion sequencing” (ExSEQ).
    Type: Application
    Filed: October 20, 2017
    Publication date: May 3, 2018
    Inventors: Fei Chen, Shahar Alon, Andrew Payne, Asmamaw Wassie, Daniel Goodwin, Edward Stuart Boyden
  • Patent number: 9957319
    Abstract: Provided is a novel method of isolating and producing human antibodies with desired specificity from human B cells. In particular, a method of isolating human antibodies from memory B cells obtained from patients which suffer from a disease which is caused by or involves activation of the immune system, for example autoimmune and inflammatory disorders is described.
    Type: Grant
    Filed: January 2, 2013
    Date of Patent: May 1, 2018
    Assignee: ImmunoQure AG
    Inventors: Adrian Hayday, Kai Krohn, Annamari Ranki, Part Peterson, Kai Kisand, Edward Stuart, Annalisa Macagno
  • Patent number: 9886180
    Abstract: A navigational user interface element includes a navigational bar displaying thereon labels associated with a plurality of sections, and a highlight indicating a section of a page that a user is currently viewing. The navigational user interface element is configured to allow a user to click on the highlight and drag it to effect navigation to a section associated with a displayed label. The navigational user interface element is configured to, when the highlight is clicked and dragged and then released, snap the highlight to the section label the highlight is closest to when the highlight is released, and display that same section. The navigational user interface element is configured to, when a label is clicked, effect navigation to the section corresponding to that label.
    Type: Grant
    Filed: September 21, 2015
    Date of Patent: February 6, 2018
    Assignee: ALLSCRIPTS SOFTWARE, LLC
    Inventors: Anthony Edward Stuart, Leigh Randal McClure
  • Patent number: 9668804
    Abstract: In an automated methodology for carrying out in vivo cell patch clamping, a cell patch clamping device is automatically moved into position and targeted to a neuron. Neuron contact is determined by analyzing the temporal series of measured resistance levels at the cell patch clamping device as it is moved. The difference between successive resistance levels is computed and compared to a threshold, which must be exceeded for a minimum number of computations before neuron contact is assumed. Pneumatic control methods are used to achieve gigaseal formation and cell break-in, leading to whole-cell patch clamp formation. An automated robotic system capable of performing this methodology automatically performs patch clamping in vivo, automatically detecting cells by analyzing the temporal sequence of electrode impedance changes.
    Type: Grant
    Filed: November 13, 2012
    Date of Patent: June 6, 2017
    Assignees: Massachusetts Institute of Technology, Georgia Tech Research Corporation
    Inventors: Suhasa Bangalore Kodandaramaiah, Edward Stuart Boyden, Crag Richard Forest, Brian Yichiun Chow, Giovanni Talei Franzesi
  • Publication number: 20170089811
    Abstract: The invention provides a method termed protein retention ExM (proExM), in which proteins, rather than labels, are anchored to the swellable gel, using a cross-linking molecule. This proExM strategy can be used to perform nanoscale imaging of immunostained cells and tissues as well as samples expressing various FPs as fluorescent signals from genetically encoded fluorescent proteins and/or conventional fluorescently labeled secondary antibodies and streptavidin that are directly anchored to the gel are preserved even when subjected to the nonspecific proteolytic digestion.
    Type: Application
    Filed: August 5, 2016
    Publication date: March 30, 2017
    Inventors: Paul Warren Tillberg, Fei Chen, Edward Stuart Boyden, Chih-Chieh Yu
  • Patent number: 9606707
    Abstract: A method for facilitating editing of a toggle item includes displaying an interface comprising one or more toggle items, each toggle item being configured to be toggled on and off when clicked on; receiving input corresponding to movement of a pointer to be disposed over a first toggle item of the one or more toggle items; determining that a predetermined amount of time has passed with the pointer being disposed over the first toggle item; displaying a cursor in the first toggle item at the location of the pointer; receiving input corresponding to a click while the cursor is displayed in the first toggle item; receiving input corresponding to editing of the first toggle item; and updating, based on the input corresponding to editing of the toggle item, the text of the toggle item.
    Type: Grant
    Filed: December 2, 2014
    Date of Patent: March 28, 2017
    Assignee: ALLSCRIPTS SOFTWARE, LLC
    Inventors: Anthony Edward Stuart, Ross Carlyle Teague
  • Publication number: 20170067096
    Abstract: The invention enables in situ genomic and transcriptomic assessment of nucleic acids to be conducted in biological specimens that have been physically expanded. The invention leverages the techniques for expansion microscopy (ExM) to provide new methods for in situ genomic and transcriptomic assessment of nucleic in a new process referred to herein as “expansion fluorescent in situ hybridization” (ExFISH).
    Type: Application
    Filed: August 5, 2016
    Publication date: March 9, 2017
    Inventors: Asmamaw Wassie, Fei Chen, Edward Stuart Boyden, Shahar Alon
  • Publication number: 20170051053
    Abstract: Provided are novel binding molecules of human origin, particularly human antibodies as well as fragments, derivatives and variants thereof that recognize antigens such as native endogenous proteins associated with, e.g., immune response, autoimmune disorders, inflammatory diseases, metabolic disorders, vascular function, neurodegenerative diseases or tumors. More particularly, a human Auto-Immunosome and corresponding monoclonal antibody reservoir are provided. In addition, pharmaceutical compositions, kits and methods for use in diagnosis and therapy of are described.
    Type: Application
    Filed: September 7, 2016
    Publication date: February 23, 2017
    Inventors: Adrian HAYDAY, Kai KROHN, Annamari RANKI, Part PETERSON, Kai KISAND, Edward STUART, Annalisa MACAGNO, Shimobi ONUOHA
  • Publication number: 20170007618
    Abstract: The invention relates to methods for preventing stress-associated disorders. These disorders may be treated with a serotonin 2c receptor (5-HT2CR) antagonist prior to, during, or following a stress-related event. Stress-associated disorders include, for instance, post-traumatic stress disorder (PTSD).
    Type: Application
    Filed: June 17, 2016
    Publication date: January 12, 2017
    Applicant: Massachusetts Institute of Technology
    Inventors: Ki Ann Goosens, Edward Stuart Boyden, Michael Vincent Baratta
  • Patent number: 9498293
    Abstract: In an automated method for in vivo multiple cell patch clamping, cell patch clamping devices are automatically moved into position and targeted to multiple corresponding cells. Cell contact is determined by analyzing the temporal series of measured resistance levels at the clamping devices as they are moved. The difference between successive resistance levels is computed and compared to a threshold, which must be exceeded for a minimum number of computations before neuron contact is assumed. Pneumatic control methods are used to achieve cell-attached or gigaseal formation and subsequent cell break-in, leading to whole-cell patch clamp formation. An automated robotic system automatically performs patch clamping in vivo, automatically detecting cells according to the methodology by analyzing the temporal sequence of electrode impedance changes.
    Type: Grant
    Filed: November 13, 2013
    Date of Patent: November 22, 2016
    Assignees: Massachusetts Institute of Technology, Georgia Tech Research Corporation
    Inventors: Suhasa Bangalore Kodandaramaiah, Edward Stuart Boyden, Craig Richard Forest
  • Patent number: 9475872
    Abstract: Provided are novel binding molecules of human origin, particularly human antibodies as well as fragments, derivatives and variants thereof that recognize antigens such as native endogenous proteins associated with, e.g., immune response, autoimmune disorders, inflammatory diseases, metabolic disorders, vascular function, neurodegenerative diseases or tumors. More particularly, a human Auto-Immunosome and corresponding monoclonal antibody reservoir are provided. In addition, pharmaceutical compositions, kits and methods for use in diagnosis and therapy of are described.
    Type: Grant
    Filed: January 2, 2013
    Date of Patent: October 25, 2016
    Assignee: ImmunoQure AG
    Inventors: Adrian Hayday, Kai Krohn, Annamari Ranki, Part Peterson, Kai Kisand, Edward Stuart, Annalisa MacAgno, Shimobi Onuoha
  • Publication number: 20160304952
    Abstract: The invention provides in situ nucleic acid sequencing to be conducted in biological specimens that have been physically expanded. The invention leverages the techniques for expansion microscopy (ExM) to provide new methods for in situ sequencing of nucleic acids as well as new methods for fluorescent in situ sequencing (FISSEQ) in a new process referred to herein as “expansion sequencing” (ExSEQ).
    Type: Application
    Filed: April 14, 2016
    Publication date: October 20, 2016
    Inventors: Edward Stuart Boyden, Fei Chen, Shahar Alon, George Church, Paul Warren Tillberg, Adam Marblestone, Evan Daugharthy
  • Publication number: 20160305856
    Abstract: The present invention leverages the techniques for expansion microscopy (ExM) to provide improved high-throughput super-resolution whole-organ imaging methodology to image protein architectures over whole organs with nanoscale resolution by using high-throughput microscopes in combination with samples that have been iteratively expanded more than once, in a method referred to herein as “iterative expansion microscopy” (iExM). In the ExM method, biological samples of interest are permeated with a swellable material that results in the sample becoming embedded in the swellable material, and then the sample can be expanded isotropically in three dimensions The process of iteratively expanding the samples can be applied to samples that have been already expanded using ExM techniques one or more additional times to iteratively expand them such that, for example, a 5-fold expanded specimen can be expanded again 3- to 4-fold, resulting in as much as a 17- to 19-fold or more linear expansion.
    Type: Application
    Filed: April 14, 2016
    Publication date: October 20, 2016
    Inventors: Edward Stuart Boyden, Jae-Byum Chang, Fei Chen, Paul Warren Tillberg
  • Publication number: 20160170595
    Abstract: A navigational user interface element includes a navigational bar displaying thereon labels associated with a plurality of sections, and a highlight indicating a section of a page that a user is currently viewing. The navigational user interface element is configured to allow a user to click on the highlight and drag it to effect navigation to a section associated with a displayed label. The navigational user interface element is configured to, when the highlight is clicked and dragged and then released, snap the highlight to the section label the highlight is closest to when the highlight is released, and display that same section. The navigational user interface element is configured to, when a label is clicked, effect navigation to the section corresponding to that label.
    Type: Application
    Filed: September 21, 2015
    Publication date: June 16, 2016
    Inventors: Anthony Edward Stuart, Leigh Randal McClure
  • Publication number: 20160116384
    Abstract: The present invention relates to an enlarged sample of interest for microscopy and methods for enlarging a sample of interest and the optical imaging of a sample of interest with resolution better than the classical microscopy diffraction limit, by synthesizing a swellable polymer network within a sample, it can be physically expanded, resulting in physical magnification.
    Type: Application
    Filed: February 20, 2015
    Publication date: April 28, 2016
    Inventors: Fei Chen, Paul Warren Tillberg, Edward Stuart Boyden
  • Publication number: 20160000590
    Abstract: An electronic intravascular device is placed in tight contact with vessel walls and is used for electrical stimulation and/or electrical recording of the vessel wall and surrounding target tissue. The electrodes may operate via connectors interfacing them to external hardware or may incorporate electronics to allow wireless power, information transfer, and control. The device includes an internal skeleton, a flexible substrate attached to the exterior of the skeleton, at least one pair of electrodes located on the substrate, and power and control circuitry connected to the electrodes. The power and control circuitry may include connectors for direct powering of the electrodes or circuit elements for wireless powering of the device by RF-based, optical-based, ultrasound-based, piezoelectric, or vibrational energy harvesting methods.
    Type: Application
    Filed: April 7, 2015
    Publication date: January 7, 2016
    Applicants: Washington University, Massachusetts Institute of Technology
    Inventors: Edward Stuart Boyden, Giovanni Talei Franzesi, Christian Wentz, Nir Grossman, Elazer R. Edelman, Colin Derdeyn, Eric Leuthardt
  • Patent number: 9141270
    Abstract: A navigational user interface element includes a navigational bar displaying thereon labels associated with a plurality of sections, and a highlight indicating a section of a page that a user is currently viewing. The navigational user interface element is configured to allow a user to click on the highlight and drag it to effect navigation to a section associated with a displayed label. The navigational user interface element is configured to, when the highlight is clicked and dragged and then released, snap the highlight to the section label the highlight is closest to when the highlight is released, and display that same section. The navigational user interface element is configured to, when a label is clicked, effect navigation to the section corresponding to that label.
    Type: Grant
    Filed: August 21, 2013
    Date of Patent: September 22, 2015
    Assignee: ALLSCIPTS SOFTWARE, LLC
    Inventors: Anthony Edward Stuart, Leigh Randal McClure
  • Publication number: 20150165227
    Abstract: The present invention provides compositions and methods for light-activated cation channel proteins and their uses within cell membranes and subcellular regions. The invention provides for proteins, nucleic acids, vectors and methods for genetically targeted expression of light-activated cation channels to specific cells or defined cell populations. In particular the invention provides millisecond-timescale temporal control of cation channels using moderate light intensities in cells, cell lines, transgenic animals, and humans. The invention provides for optically generating electrical spikes in nerve cells and other excitable cells useful for driving neuronal networks, drug screening, and therapy.
    Type: Application
    Filed: November 10, 2014
    Publication date: June 18, 2015
    Inventors: Karl Deisseroth, Edward Stuart Boyden