Patents by Inventor Patrick Marks

Patrick Marks has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Patent number: 8383369
    Abstract: Methods, devices, and systems for performing intermittent detection during analytical reactions are provided. Such methods facilitate collection of reaction data from disparate reaction times. Further, such methods are useful for reducing photo-induced damage of one or more reactants in an illuminated analytical reaction at a given reaction time. In preferred embodiments, the reaction mixture is subjected to at least one illuminated and non-illuminated period and allowed to proceed such that the time in which the reaction mixture is illuminated is less than a photo-induced damage threshold period.
    Type: Grant
    Filed: September 16, 2009
    Date of Patent: February 26, 2013
    Assignee: Pacific Biosciences of California, Inc.
    Inventors: Kenneth Mark Maxham, Jon Sorenson, John Eid, Patrick Marks, Kevin Travers, Donald Gray, Robin Emig, Mark Chaisson, Benjamin Flusberg
  • Publication number: 20130032725
    Abstract: An imaging device suitable for detecting certain imaging particles and recording the detection of imaging particles, and as such can include certain recording devices such as a charge storage structure.
    Type: Application
    Filed: July 24, 2012
    Publication date: February 7, 2013
    Applicant: SPANSION LLC
    Inventors: Timothy Z. Hossain, Patrick Mark Clopton, Clayton Fullwood, Dan E. Posey
  • Patent number: 8370079
    Abstract: The present invention is generally directed to powerful and flexible methods and systems for consensus sequence determination from replicate biomolecule sequence data. It is an object of the present invention to improve the accuracy of consensus biomolecule sequence determination from replicate sequence data by providing methods for assimilating replicate sequence into a final consensus sequence more accurately than any one-pass sequence analysis system.
    Type: Grant
    Filed: November 20, 2009
    Date of Patent: February 5, 2013
    Assignee: Pacific Biosciences of California, Inc.
    Inventors: Jon Sorenson, Susan Tang, Patrick Marks, Chen-Shan Chin
  • Patent number: 8317573
    Abstract: An apparatus and associated method for dressing a workpiece. A first annular abrasive dressing element is attached to a base, an inner arcuate edge of the first annular abrasive dressing element defining a cavity. A second annular abrasive dressing element is also attached to the base and disposed in the cavity, an outer arcuate edge of the second annular abrasive dressing element noncontactingly separated from the inner arcuate edge of the first annular abrasive dressing element defining a circumferential space therebetween.
    Type: Grant
    Filed: April 9, 2008
    Date of Patent: November 27, 2012
    Assignee: Seagate Technology LLC
    Inventor: Patrick Mark Hamill
  • Patent number: 8232515
    Abstract: An imaging device suitable for detecting certain imaging particles and recording the detection of imaging particles, and as such can include certain recording devices such as a charge storage structure.
    Type: Grant
    Filed: May 27, 2009
    Date of Patent: July 31, 2012
    Assignee: Spansion LLC
    Inventors: Timothy Z. Hossain, Patrick Mark Clopton, Clayton Fullwood, Dan E. Posey
  • Patent number: 8182993
    Abstract: Computer implemented methods, and systems performing such methods for processing signal data from analytical operations and systems, and particularly in processing signal data from sequence-by-incorporation processes to identify nucleotide sequences of template nucleic acids and larger nucleic acid molecules, e.g., genomes or fragments thereof.
    Type: Grant
    Filed: June 5, 2008
    Date of Patent: May 22, 2012
    Assignee: Pacific Biosciences of California, Inc.
    Inventors: Austin B. Tomaney, Kenneth Mark Maxham, David Holden, Kevin Hester, Devon Murphy, Patrick Marks
  • Patent number: 8143030
    Abstract: Methods, devices, and systems for performing intermittent detection during analytical reactions are provided. Such methods facilitate collection of reaction data from disparate reaction times. Further, such methods are useful for reducing photo-induced damage of one or more reactants in an illuminated analytical reaction at a given reaction time. In preferred embodiments, the reaction mixture is subjected to at least one illuminated and non-illuminated period and allowed to proceed such that the time in which the reaction mixture is illuminated is less than a photo-induced damage threshold period.
    Type: Grant
    Filed: March 27, 2009
    Date of Patent: March 27, 2012
    Assignee: Pacific Biosciences of California, Inc.
    Inventors: Kenneth Mark Maxham, Jon Sorenson, John Eid, Patrick Marks, Kevin Travers
  • Publication number: 20120015825
    Abstract: Methods and systems for obtaining and processing optical signal data from analytical reactions, and in processing signal data from arrays of sequence-by-incorporation processes to identify nucleotide sequences of template nucleic acids and larger nucleic acid molecules, e.g., genomes or fragments thereof are described. Defining and applying a 2-dimensional software mask allows for obtaining signal data from arrays with higher signal to noise than where the mask is not applied.
    Type: Application
    Filed: June 30, 2011
    Publication date: January 19, 2012
    Applicant: Pacific Biosciences of California, Inc.
    Inventors: Cheng Frank Zhong, Austin B. Tomaney, Patrick Marks, Stuart George Johnson, James N. LaBrenz, Paul Lundquist
  • Publication number: 20110256631
    Abstract: Computer implemented methods, and systems performing such methods for processing signal data from analytical operations and systems, and particularly in processing signal data from sequence-by-incorporation processes to identify nucleotide sequences of template nucleic acids and larger nucleic acid molecules, e.g., genomes or fragments thereof.
    Type: Application
    Filed: February 24, 2011
    Publication date: October 20, 2011
    Applicant: Pacific Biosciences of California, Inc.
    Inventors: Austin Tomaney, Kenneth Mark Maxham, David Holden, Kevin Hester, Devon Murphy, Patrick Marks
  • Publication number: 20110183320
    Abstract: Methods, compositions, and systems are provided for characterization of modified nucleic acids. In certain preferred embodiments, single molecule sequencing methods are provided for identification of modified nucleotides within nucleic acid sequences. Modifications detectable by the methods provided herein include chemically modified bases, enzymatically modified bases, abasic sites, non-natural bases, secondary structures, and agents bound to a template nucleic acid.
    Type: Application
    Filed: November 12, 2010
    Publication date: July 28, 2011
    Applicant: Pacific Biosciences of California, Inc.
    Inventors: Benjamin Flusberg, Jonas Korlach, Jeffrey Wegener, Tyson A. Clark, Igor Vilfan, Andrey Kislyuk, Stephen Turner, Jon Sorenson, Kevin Travers, Cheryl Heiner, Austin B. Tomaney, Patrick Marks, Jessica Lee, Lei Jia, Dale Webster, John Lyle, Jeremiah Hanes, Joseph Puglisi
  • Patent number: 7902520
    Abstract: A method of operating an electronic device including determining an initial charge level at a non-volatile charge storage structure of a radiation-sensitive device including a radiation-reactive material and determining if a first radiation event has occurred based upon the non-volatile charge storage device having a different charge level than the initial charge level. The method further includes identifying the first radiation event as associated with either a first type of radiation or a second type of radiation based upon the different charge level.
    Type: Grant
    Filed: December 19, 2008
    Date of Patent: March 8, 2011
    Assignee: Spansion LLC
    Inventors: Timothy Z. Hossain, Patrick Mark Clopton, Clayton Fullwood, Dan E. Posey
  • Patent number: 7850981
    Abstract: Immuno-adjuvant photodynamic therapy to treat and prevent metastatic cancer is effected using photosensitizers in combination with immuno-adjuvants to destroy metastatic tumor cells.
    Type: Grant
    Filed: November 9, 2004
    Date of Patent: December 14, 2010
    Assignees: QLT, Inc., University of British Columbia (UBC)
    Inventors: Patrick Mark Curry, Anna M. Richter, Julia G. Levy, David W. C. Hunt
  • Publication number: 20100169026
    Abstract: The present invention is generally directed to powerful and flexible methods and systems for consensus sequence determination from replicate biomolecule sequence data. It is an object of the present invention to improve the accuracy of consensus biomolecule sequence determination from replicate sequence data by providing methods for assimilating replicate sequence into a final consensus sequence more accurately than any one-pass sequence analysis system.
    Type: Application
    Filed: November 20, 2009
    Publication date: July 1, 2010
    Applicant: Pacific Biosciences of California, Inc.
    Inventors: Jon Sorenson, Susan Tang, Patrick Marks, Chen-Shan Chin
  • Publication number: 20100155611
    Abstract: A mobile device including a housing, a wireless signal transceiver contained within the housing, and a radiation-detecting structure comprising a charge storage structure contained within the housing to detect radiation.
    Type: Application
    Filed: December 19, 2008
    Publication date: June 24, 2010
    Applicant: SPANSION LLC
    Inventors: Clayton Fullwood, Timothy Z. Hossain, Patrick Mark Clopton, Roberto Colecchia, Richard Blish
  • Publication number: 20100155618
    Abstract: A method of operating an electronic device including determining an initial charge level at a non-volatile charge storage structure of a radiation-sensitive device including a radiation-reactive material and determining if a first radiation event has occurred based upon the non-volatile charge storage device having a different charge level than the initial charge level. The method further includes identifying the first radiation event as associated with either a first type of radiation or a second type of radiation based upon the different charge level.
    Type: Application
    Filed: December 19, 2008
    Publication date: June 24, 2010
    Applicant: SPANSION LLC
    Inventors: Timothy Z. Hossain, Patrick Mark Clopton, Clayton Fullwood, Dan E. Posey
  • Publication number: 20100075309
    Abstract: Methods, devices, and systems for performing intermittent detection during analytical reactions are provided. Such methods facilitate collection of reaction data from disparate reaction times. Further, such methods are useful for reducing photo-induced damage of one or more reactants in an illuminated analytical reaction at a given reaction time. In preferred embodiments, the reaction mixture is subjected to at least one illuminated and non-illuminated period and allowed to proceed such that the time in which the reaction mixture is illuminated is less than a photo-induced damage threshold period.
    Type: Application
    Filed: March 27, 2009
    Publication date: March 25, 2010
    Applicant: Pacific Biosciences of California, Inc.
    Inventors: Kenneth Mark Maxham, Jon Sorenson, John Eid, Patrick Marks, Kevin Travers
  • Publication number: 20100075327
    Abstract: Methods, devices, and systems for performing intermittent detection during analytical reactions are provided. Such methods facilitate collection of reaction data from disparate reaction times. Further, such methods are useful for reducing photo-induced damage of one or more reactants in an illuminated analytical reaction at a given reaction time. In preferred embodiments, the reaction mixture is subjected to at least one illuminated and non-illuminated period and allowed to proceed such that the time in which the reaction mixture is illuminated is less than a photo-induced damage threshold period.
    Type: Application
    Filed: September 16, 2009
    Publication date: March 25, 2010
    Applicant: Pacific Biosciences of California, Inc.
    Inventors: Kenneth Mark Maxham, Jon Sorenson, John Eid, Patrick Marks, Kevin Travers, Donald Gray, Robin Emig, Mark Chaisson, Benjamin Flusberg
  • Publication number: 20100056982
    Abstract: The present method involves the photodynamic treatment of acne vulgaris. The method involves the topical administration of a photosensitizer composition comprising hydrophobic green porphyrins such as lemuteporfin, polyethylene glycol and skin penetration enhancers such as oleyl alcohol and TRANSCUTOLâ„¢ to acne-affected skin and subsequent exposure of that skin to energy of a wavelength of activating the photosensitizer.
    Type: Application
    Filed: February 4, 2005
    Publication date: March 4, 2010
    Applicant: QLT Inc.
    Inventors: Alain H. Curaudeau, Herma C. Neyndorff, Jinj-Song Tao, Morgan Chun Lam, Patrick Mark Curry, Valery Rubinchik, David W.C. Hunt
  • Publication number: 20090302203
    Abstract: An imaging device suitable for detecting certain imaging particles and recording the detection of imaging particles, and as such can include certain recording devices such as a charge storage structure.
    Type: Application
    Filed: May 27, 2009
    Publication date: December 10, 2009
    Applicant: SPANSION LLC
    Inventors: Timothy Z. Hossain, Patrick Mark Clopton, Clayton Fullwood, Dan E. Posey
  • Publication number: 20090258581
    Abstract: A dresser for dressing a grind stone including two concentric solid wheel dressing elements. The dressing elements include an abrasive material within a matrix material. The grind stones dressed with the dressers of the invention operate at high removal rates thereby grinding substrates quickly and at low cost. The grind stones dressed with the dressers of the invention also produce favorable mechanical surface characteristics such as low waviness and flatness.
    Type: Application
    Filed: April 9, 2008
    Publication date: October 15, 2009
    Applicant: SEAGATE TECHNOLOGY LLC
    Inventor: Patrick Mark Hamill