MODIFIED GLUCOSE DEHYDROGENASE GENE
[Object] To provide an FAD-conjugated glucose dehydrogenase having a higher specificity for glucose. [Means for Resolution] A modified glucose dehydrogenase (GLD) which includes a substitution of at least one amino acid residue selected from the group consisting of amino acid residues at positions 37, 69, 72, 73, 76, 78, 102, 217, 228, 240, 356, 407, 424, 437, 527, and 530 in an amino acid sequence of a wild-type FAD-conjugated glucose dehydrogenase (GLD) represented by SEQ ID NO: 1, and has a decreased ratio of activity for xylose/activity for glucose as compared with the wild-type GLD; a polynucleotide encoding the modified GLD; a recombinant vector containing the polynucleotide; a transformed cell produced by using the recombinant vector; etc.
The present invention relates to an FAD-conjugated glucose dehydrogenase (GLD) which requires flavin adenine dinucleotide (FAD) as a coenzyme and catalyzes a reaction of the dehydrogenation (oxidation) of a hydroxy group at the 1-position of glucose. More particularly, the invention relates to a modified GLD polypeptide having a modified substrate specificity; a polynucleotide encoding the modified GLD; a method for the production of the enzyme; and a method for the determination of glucose, a reagent composition for use in the determination of glucose, a biosensor for use in the determination of glucose, and others, each characterized by using the enzyme. Incidentally, in the description, unless otherwise specified, monosaccharides such as glucose refer to those in the D-form.
BACKGROUND ARTThe blood glucose concentration is an important marker for diabetes. In the determination of a blood glucose concentration, a glucose oxidase has conventionally been used. However, such a glucose oxidase is affected by a dissolved oxygen concentration and an error is caused in the measured value. Therefore, a glucose dehydrogenase which is not affected by oxygen has also been widely used recently.
As a commercially available glucose dehydrogenase which is not affected by oxygen, a glucose dehydrogenase which requires pyrroloquinoline quinone (PQQ) as a coenzyme (PQQ-GDH) is known, however, a conventional PQQ-GDH has a disadvantage that it reacts also with sugars other than glucose such as maltose and galactose.
As a countermeasure against this disadvantage, the group of the present inventors found a novel soluble GLD which requires FAD as a coenzyme from Aspergillus terreus FERM BP-08578 strain (Patent document 1) and succeeded in cloning of a gene (Patent document 2). Such a GLD has unprecedented excellent properties that it is not affected by dissolved oxygen, oxidizes a hydroxy group at the 1-position of glucose, and has a low activity (enzymatic activity) for maltose and galactose.
Further, it is shown that the glucose dehydrogenases derived from Penicillium lilacinoechinulatum NBRC 6231, Penicillium italicum NBRC 32032, and Aspergillus oryzae TI strains disclosed in Patent document 3 and the glucose dehydrogenase derived from Aspergillus oryzae BB-56 strain disclosed in patent document 4 also have a low activity for maltose and galactose.
However, there was still a problem that the substrate specificity of these conventional GLDs should be improved.
Patent document 1: WO 2004/058958
Patent document 2: WO 2006/101239
Patent document 3: WO 2007/116710
Patent document 4: WO 2007/139013
DISCLOSURE OF THE INVENTION Problems to be Solved by the InventionConventionally known GLDs have a disadvantage that they act on xylose, and a patient who is undergoing a xylose absorption test shows a blood glucose level higher than the actual value. Therefore, a caution not to use GLD is also given to the patient.
Accordingly, there is a need for a GLD having a higher specificity for glucose, and an object to be achieved by the invention is to provide such a GLD.
An object of the invention is to achieve the above object and to provide a novel gene (polynucleotide) encoding a modified GLD having excellent properties that it has excellent reactivity to glucose and excellent substrate recognition performance and also has a low activity for maltose and galactose and also for xylose; a method for the production of the enzyme using a transformed cell transfected with the gene; and a method for the determination of glucose, a reagent composition for use in the determination of glucose, a biosensor for use in the determination of glucose and others, each characterized by using the enzyme.
Means for Solving the ProblemsThe invention relates to the following aspects.
[Aspect 1]A modified glucose dehydrogenase (GLD), comprising a substitution of at least one amino acid residue selected from the group consisting of amino acid residues at positions 37, 69, 72, 73, 76, 78, 102, 217, 228, 240, 356, 407, 424, 437, 527, and 530 in an amino acid sequence of a wild-type FAD-conjugated glucose dehydrogenase (GLD) represented by SEQ ID NO: 1, and having a decreased ratio of activity for xylose/activity for glucose as compared with the wild-type GLD.
[Aspect 2]The modified GLD according to Aspect 1, wherein the ratio of activity for xylose/activity for glucose is decreased to 0.85 times or less of that of the wild-type GLD.
[Aspect 3]The modified GLD according to Aspect 1 or 2, wherein the amino acid substitution is selected from the group consisting of D72A, G73D, G73A, G73S, G73C, G73Q, G73W, G73Y, G73E, G73H, R102H, Y228H, V356A, and P527L, and S37V, S37G, T69I, L76F, F78L, R102V, N217S, P240I, P240L, Q407A, Q407S, Y424S, A437I, and T530A.
[Aspect 4]A modified glucose dehydrogenase (GLD), comprising an amino acid substitution selected from the group consisting of N64D+R102H+L250Q, G73D, Y228H+A589T, K374Q+P527L, V356A, D72A+G210S, G73A, P527L, D72A, Y228H, G73C, G73H, R102H, D72A+G73D, G73S, G73Q, G73W, G73Y, and G73E, and S37V, S37G, T69I, L76F, F78L, R102V, N217S, P240I, P240L, Q407A, Q407S, Y424S, A437I, and T530A in an amino acid sequence of a wild-type FAD-conjugated glucose dehydrogenase (GLD) represented by SEQ ID NO: 1.
[Aspect 5]A polynucleotide encoding the modified GLD according to any one of Aspects 1 to 4.
[Aspect 6]The polynucleotide according to Aspect 5, wherein the polynucleotide encoding the amino acid sequence of the wild-type FAD-conjugated glucose dehydrogenase (GLD) represented by SEQ ID NO: 1 has a base sequence represented by SEQ ID NO: 2.
[Aspect 7]A recombinant vector, comprising the polynucleotide according to Aspect 5 or 6.
[Aspect 8]A transformed cell, which is produced by using the recombinant vector according to Aspect 7.
[Aspect 9]The transformed cell according to Aspect 8, which is Escherichia coli or Aspergillus oryzae.
[Aspect 10]A method for the production of a modified GLD,
characterized by comprising: culturing the transformed cell according to Aspect 8 or 9; and collecting a modified GLD from the resulting culture.
[Aspect 11]A method for the determination of glucose, characterized by using the modified GLD according to any one of Aspects 1 to 4 or a modified GLD obtained by the production method according to Aspect 10.
[Aspect 12]A reagent composition for use in the determination of glucose, characterized by comprising the modified GLD according to anyone of Aspects 1 to 4 or a modified GLD obtained by the production method according to Aspect 10.
[Aspect 13]A biosensor for use in the determination of glucose, characterized by using the modified GLD according to any one of Aspects 1 to 4 or a modified GLD obtained by the production method according to Aspect 10.
ADVANTAGE OF THE INVENTIONBy using the polynucleotide of the invention, a modified GLD having such excellent properties that it has excellent substrate recognition performance of glucose and also has a low activity for maltose and xylose can be produced uniformly in a large amount by, for example, a recombinant DNA technique.
The modified GLD of the invention is characterized by comprising a substitution of at least one amino acid residue selected from the group consisting of amino acid residues at positions 37, 69, 72, 73, 76, 78, 102, 217, 228, 240, 356, 407, 424, 437, 527, and 530 in an amino acid sequence of a wild-type FAD-conjugated glucose dehydrogenase (GLD) represented by SEQ ID NO: 1 (containing a signal peptide) in the following Table 1 (a one-letter notation for amino acid sequences), and having a decreased ratio of activity for xylose/activity for glucose as compared with the wild-type GLD.
As a typical example of the substitution of the amino acid residue described above, an amino acid substitution selected from the group consisting of D72A, G73D, G73A, G73S, G73C, G73Q, G73W, G73Y, G73E, G73H, R102H, Y228H, V356A, and P527L, and S37V, S37G, T69I, L76F, F78L, R102V, N217S, P240I, P240L, Q407A, Q407S, Y424S, A437I, and T530A can be exemplified.
The modified GLD of the invention has a decreased activity for xylose such that the “ratio of activity for xylose/activity for glucose” (%) as defined in this description is a significant value as compared with the wild-type GLD, for example, the ratio is at least 0.85 times or less, preferably 0.5 times or less, more preferably 0.3 times or less, further more preferably 0.2 times or less of that of the wild-type GLD. Incidentally, the ratio of activity for xylose/activity for glucose varies depending on the culture conditions for a transformant, the determination conditions for an enzymatic activity, or the like, and therefore, it is necessary to determine the ratio of activity for xylose/activity for glucose (%) for the wild-type GLD and the modified GLD under the same conditions and to make a comparison.
Further, the modified GLD of the invention has an excellent characteristic that when a value of enzymatic activity for D-glucose is taken as 100%, a value of enzymatic activity for maltose (also referred to as “a ratio of activity for maltose/activity for glucose”) is preferably 5% or less, more preferably 3% or less, and a value of enzymatic activity for D-galactose (also referred to as “a ratio of activity for D-galactose/activity for glucose”) is preferably 5% or less, more preferably 3% or less.
Further, the modified GLD of the invention may have an amino acid sequence in which one to several amino acid residues have been further substituted, deleted, or added in the amino acid sequence represented by SEQ ID NO: 1 in addition to the above-mentioned amino acid substitution as long as it has a decreased ratio of activity for xylose/activity for glucose as compared with the wild-type GLD as described above.
As specifically described in Examples, a preferred example of the modified GLD of the invention is a modified GLD having an amino acid substitution selected from the group consisting of N64D+R102H+L250Q, G73D, Y228H+A589T, K374Q+P527L, V356A, D72A+G210S, G73A, P527L, D72A, Y228H, G73C, G73H, R102H, D72A+G73D, G73S, G73Q, G73W, G73Y, and G73E, and S37V, S37G, T69I, L76F, F78L, R102V, N217S, P240I, P240L, Q407A, Q407S, Y424S, A437I, and T530A, and an arbitrary combination thereof in the amino acid sequence of the wild-type GLD represented by SEQ ID NO: 1.
As one example of the polynucleotide encoding the modified GLD of the invention, a polynucleotide having a base sequence represented by SEQ ID NO: 2 (Table 2) which is a polynucleotide encoding the amino acid sequence of the wild-type GLD represented by SEQ ID NO: 1 (Table 1) can be exemplified. Other than this, a different codon may be used as long as the codon encodes the same amino acid residue. For example, a usage codon can be appropriately optimized depending on the kind of a host cell to be transformed with the polynucleotide or the like.
Incidentally, in the invention, the “polynucleotide” refers to a molecule in which 100 or more phosphate esters of nucleosides in which a purine or a pyrimidine is attached to a sugar via a β-N-glycosidic bond (ATP (adenosine triphosphate), GTP (guanosine triphosphate), CTP (cytidine triphosphate), or UTP (uridine triphosphate); or dATP (deoxyadenosine triphosphate), dGTP (deoxyguanosine triphosphate), dCTP (deoxycytidine triphosphate), or dTTP (deoxythymidine triphosphate). Specific examples thereof include a chromosomal DNA (a DNA containing an intron) encoding the modified GLD of the invention, a mRNA transcribed from the chromosomal DNA, a cDNA synthesized from the mRNA, and a polynucleotide amplified by PCR using any of these as a template. An “oligonucleotide” refers to a molecule in which 2 to 99 nucleotides are linked to one another. Further, the “polypeptide” refers to a molecule formed from 30 or more amino acid residues which are linked to one another via an amide bond (peptide bond) or an unnatural residual linkage, and also those with the addition of a sugar chain, those subjected to artificial chemical modification, and the like are included. Further, in the polynucleotide of the invention, also a base sequence encoding a signal sequence of the modified GLD can be appropriately included depending on the kind of a transformed cell or the like.
The polynucleotide of the invention can be easily prepared by an arbitrary method known to those skilled in the art. For example, as specifically described in Examples of this description, a wild-type GLD gene is isolated from a plasmid containing a polynucleotide having a base sequence represented by SEQ ID NO: 2, and introducing a random mutation or a site-specific mutation by utilizing any of various PCR methods known to those skilled in the art using an appropriate oligonucleotide primer (probe) set based on the isolated gene, whereby the polynucleotide encoding the modified GLD of the invention can be prepared.
Further, the polynucleotide of the invention can be synthesized in vitro by a well-known chemical synthesis technique as described in a document (such as Carruthers (1982) Cold Spring Harbor Symp. Quant. Biol. 47: 411-418; Adams (1983) J. Am. Chem. Soc. 105: 661; Belousov (1997) Nucleic Acid Res. 25: 3440-3444; Frenkel (1995) Free Radic. Biol. Med. 19: 373-380; Blommers (1994) Biochemistry 33: 7886-7896; Narang (1979) Meth. Enzymol. 68: 90; Brown (1979) Meth. Enzymol. 68: 109; Beaucage (1981) Tetra. Lett. 22: 1859; or U.S. Pat. No. 4,458,066).
The recombinant vector of the invention can be prepared by an arbitrary method known to those skilled in the art using an appropriate cloning vector or expression vector depending on the kind of a polynucleotide to be used as an insert, an intended use thereof, or the like. For example, in the case where the modified GLD of the invention is produced using a cDNA or an ORF region thereof as an insert, an expression vector for in vitro transcription, or also an expression vector suitable for the respective prokaryotic cells such as Escherichia coli and Bacillus subtilis; and eukaryotic cells such as yeasts, filamentous fungi (such as molds), insect cells, and mammalian cells can be used.
As the transformed cell of the invention, for example, a prokaryotic cell such as Escherichia coli or Bacillus subtilis; a eukaryotic cell such as a yeast, a mold, an insect cell, or a mammalian cell; or the like can be used. As for such a cell, a host can be suitably selected in accordance with the need of a sugar chain or other peptide modification for the modified GLD. Such a transformed cell can be prepared by introducing a recombinant vector into a cell by an arbitrary method known to those skilled in the art such as an electroporation method, a calcium phosphate method, a liposome method, or a DEAE dextran method. Specific examples of the recombinant vector and the transformed cell include a recombinant vector shown in the below-mentioned Examples and a transformed Escherichia coli and a transformed mold prepared with this vector.
In the case where the modified GLD of the invention is produced by expressing a DNA in a microorganism such as Escherichia coli, a recombinant expression vector in which the above-mentioned polynucleotide has been introduced into an expression vector having an origin, a promoter, a ribosome-binding site, a DNA cloning site, a terminator sequence, and the like and replicable in the microorganism is prepared, a host cell is transformed with this expression vector, and the resulting transformant is cultured, whereby the modified GLD can be produced in a large amount in the microorganism. At this time, if a start codon and a stop codon are introduced upstream and downstream of an arbitrary coding region and the DNA is expressed, a modified GLD fragment containing the arbitrary region can also be obtained. Alternatively, the enzyme can also be expressed as a fusion protein with another protein. By cleaving this fusion protein with an appropriate protease, the target modified GLD can also be obtained. Examples of the expression vector for Escherichia coli include a pUC system, pBluescript II, a pET expression system, a pGEX expression system, and a pCold expression system.
Alternatively, in the case where the modified GLD of the invention is produced by expressing it in a eukaryotic cell, a recombinant vector is prepared by inserting the above-mentioned polynucleotide into an expression vector for a eukaryotic cell having a promoter, a splicing region, a poly(A) addition site, and the like, and the resulting recombinant vector is introduced into a eukaryotic cell, whereby the modified GLD can be produced in the eukaryotic cell. The polynucleotide can be maintained in a cell in a state of a plasmid or the like, or can be maintained by incorporating the polynucleotide into a chromosome. Examples of the expression vector include pKA1, pCDM8, pSVK3, pSVL, pBK-CMV, pBK-RSV, an EBV vector, pRS, and pYE82. Further, if pIND/V5-His, pFLAG-CMV-2, pEGFP-N1, pEGFP-C1, or the like is used as the expression vector, an FAD-conjugated glucose dehydrogenase polypeptide can also be expressed as a fusion protein to which any of a variety of tags such as a His tag, a FLAG tag, or GFP has been attached. As the eukaryotic cell, a cultured mammalian cell such as a monkey kidney cell COS-7, or a Chinese hamster ovary cell CHO; a budding yeast, a fission yeast, a mold, a silkworm cell, or a Xenopus oocyte is generally used, however, any kind of eukaryotic cell may be used as long as it can express the modified GLD of the invention. In order to introduce the expression vector into the eukaryotic cell, a known method such as an electroporation method, a calcium phosphate method, a liposome method, or a DEAE dextran method can be used.
In particular, cloning in which an appropriate Aspergillus oryzae strain is transformed with a recombinant vector derived from Aspergillus oryzae containing a polynucleotide encoding the modified GLD of the invention is preferred.
In order to collect, in other words, isolate and purify the target protein from a culture (such as microbial cells or a culture broth or a culture medium composition containing the enzyme secreted to the outside of microbial cells) after the modified GLD of the invention is expressed in a prokaryotic cell or a eukaryotic cell, known separation procedures can be combined. Examples of such procedures include a treatment with a denaturant such as urea or a surfactant, a heat treatment, a pH treatment, an ultrasonication treatment, enzymatic digestion, salting out, a solvent sedimentation method, dialysis, centrifugal separation, ultrafiltration, gel filtration, SDS-PAGE, isoelectric focusing, ion exchange chromatography, hydrophobic chromatography, reverse-phase chromatography, and affinity chromatography (also including a method utilizing a tag sequence, and a method using a polyclonal antibody or a monoclonal antibody specific for the modified GLD). By using such a method, the modified GLD of the invention can be produced in a large amount.
Further, the modified GLD of the invention can be produced in vitro by preparing an RNA through in vitro transcription from a vector containing the polynucleotide (a cDNA or a coding region thereof) of the invention and performing in vitro translation using the RNA as a template.
In the case where the modified GLD is produced by in vitro expression, the above-mentioned polynucleotide is inserted into a vector having a promoter to which an RNA polymerase can bind thereby preparing a recombinant vector, and this vector is added to an in vitro translation system such as a rabbit reticulocyte lysate or a wheat germ extract including an RNA polymerase corresponding to the promoter, whereby the modified GLD can be produced in vitro. Examples of the promoter to which an RNA polymerase can bind include T3, T7, and SP6. Examples of the vector containing such a promoter include pKA1, pCDM8, pT3/T718, pT7/319, and pBluescript II.
The modified GLD of the invention which can be produced by the method described above is an enzyme which catalyzes a reaction of the dehydrogenation of glucose in the presence of an electron acceptor, and therefore, the use thereof is not particularly limited as long as a change caused by this reaction can be utilized. For example, it can be used in the medical field or the clinical field such as the use in the determination of glucose in a sample containing a biological material, a reagent for use in the determination thereof, or a reagent for use in the elimination thereof, and also it can be used in the production of a substance using a coenzyme-conjugated glucose dehydrogenase.
The reagent composition for use in the determination of glucose of the invention may be formulated into a single reagent by mixing all the components, or in the case where the reagent composition contains components interfering with each other, the respective components may be separated so as to provide suitable combinations. Further, the reagent composition may be prepared as a reagent in the form of a solution or a powder, and moreover, it may be prepared as a test paper or a film for use in the analysis by being incorporated in an appropriate support such as a filter paper or a film. Incidentally, a standard reagent containing a deproteinizing agent such as perchloric acid or a fixed amount of glucose may be attached. The amount of the enzyme in this composition is preferably about 0.1 to 50 units per sample. Examples of a specimen to be determined for glucose include plasma, serum, spinal fluid, saliva, and urine.
The biosensor of the invention is a glucose sensor which determines a glucose concentration in a sample liquid using a reaction layer containing the modified GLD of the invention as an enzyme. The biosensor is produced by, for example, forming an electrode system comprising a working electrode, its counter electrode, and a reference electrode on an insulating base plate using a method such as screen printing, and forming an enzyme reaction layer containing a hydrophilic polymer, an oxidoreductase, and an electron acceptor on this electrode system in contact therewith. When a sample liquid containing a substrate is dropped on the enzyme reaction layer of this biosensor, the enzyme reaction layer is dissolved and the enzyme and the substrate are reacted with each other, and accompanying the reaction, the electron acceptor is reduced. After completion of the enzymatic reaction, the reduced electron acceptor is electrochemically oxidized. At this time, this biosensor can determine the substrate concentration in the sample liquid from the oxidation current value obtained. In addition, other than this, a biosensor of a type that detects a coloring intensity, a pH change, or the like can also be constructed.
As the electron acceptor of the biosensor, a chemical substance having an excellent ability to donate and accept electrons can be used. The chemical substance having an excellent ability to donate and accept electrons is a chemical substance generally called “an electron carrier”, “a mediator”, or “a redox mediator”, and as a chemical substance corresponding to such a substance, an electron carrier or a redox mediator cited in, for example, JP-T-2002-526759 or the like may be used. Specific examples thereof include an osmium compound, a quinone compound, and a ferricyan compound.
In the determination of the activity of GLD, the enzyme is preferably used by appropriately diluting it such that the final concentration thereof is 0.1 to 1.0 unit/mL. Incidentally, the unit of the enzymatic activity (unit) of the enzyme is an enzymatic activity that oxidizes 1 μmmol of glucose per minute. The enzymatic activity of GLD can be determined by the following method.
[Method for Determination of Enzymatic Activity]1.0 mL of 0.1 M potassium phosphate buffer (pH 7.0), 1.0 mL of 1.0 M D-glucose, 0.14 mL of 3 mM 2,6-dichlorophenol indophenol (hereinafter referred to as DCIP), 0.2 mL of 3 mM 1-methoxy-5-methylphenazinium methylsulfate, and 0.61 mL of water are added to a 3-mL quartz cell (light path length: 1 cm), and the cell is placed in a spectrophotometer provided with a thermostat cell holder and incubated at 37° C. for 10 minutes. Thereafter, 0.05 mL of an enzyme solution is added to the cell, and then, a change in the absorbance of DCIP at 600 nm (ΔABS/min) is determined. The molar extinction coefficient of DCIP at pH 7.0 is taken as 16.3×103 cm−1M−1, and the enzymatic activity to reduce 1 μmol of DCIP per minute is substantially equivalent to 1 unit of the enzymatic activity. Therefore, the enzymatic activity was determined from the change in the absorbance according to the following equation.
Enzymatic activity (unit/mL)=(−ΔABS/16.3)×3.0/0.05×(Dilution ratio of enzyme) [Equation 1]
In the same manner as the above-mentioned procedure, the enzymatic activity to oxidize 1 μmol of xylose, maltose, or galactose per minute can be determined using the same concentration of D-xylose (manufactured by Sigma, Inc.), maltose monohydrate (manufactured by Nacalai Tesque), or D-galactose (manufactured by Wako Pure Chemical Industries, Ltd.) in place of D-glucose.
Further, in the case where the enzymatic activity (U) to oxidize glucose is taken as 100%, the enzymatic activity (relative activity) to oxidize xylose is defined as the “ratio of activity for xylose/activity for glucose” (%).
Similarly, in the case where the enzymatic activity (U) to oxidize glucose is taken as 100%, the enzymatic activity (relative activity) to oxidize maltose or galactose is defined as the “ratio of activity for maltose/activity for glucose” (%) or the “ratio of activity for galactose/activity for glucose” (%).
Incidentally, the determination of the activity can also be performed using a plate reader. In this case, a change in the absorbance at 600 nm is determined using a reaction reagent having the same composition as described above and an appropriately diluted enzyme, and converted in proportion to a change in the absorbance of an enzyme solution for which the enzymatic activity has already been known by the above-mentioned activity determination procedure using a quartz cell, whereby the enzymatic activity of the enzyme solution can be calculated.
In the determination of the protein concentration of this enzyme, the enzyme is preferably used by appropriately diluting it such that the final concentration thereof is 0.2 to 0.9 mg/mL. The protein concentration in the invention can be determined by the calculation from a calibration curve prepared by using bovine serum albumin (BSA, manufactured by Wako Pure Chemical Industries, Ltd., for biochemical purpose) as a standard substance using a Bio-Rad Protein Assay, which is a protein concentration determination kit and can be purchased from Bio-Rad Laboratories, Inc. Japan according to the instruction attached thereto.
Incidentally, various techniques used for implementing the invention can be easily and surely carried out by those skilled in the art based on publicly known documents and the like exclusive of techniques the sources of which are indicated specifically. For example, the genetic engineering and molecular biological techniques can be carried out based on the methods described in Sambrook and Maniatis, in Molecular Cloning: A Laboratory Manual, Cold Spring Harbor Laboratory Press, New York, 1989; Ausubel, F. M. et al., Current Protocols in Molecular Biology, John Wiley & Sons, New York, N.Y., 1995; and the like or the methods described in the references cited therein or methods substantially equivalent thereto or modified methods thereof. In addition, the terms in the invention are basically in accordance with IUPAC-IUB Commission on Biochemical Nomenclature or the meanings of terms conventionally used in the art.
Hereinafter, the invention will be more specifically described with reference to Examples. However, the technical scope of the invention is by no means limited to the description thereof. Further, the contents described in the documents cited in this description constitute the disclosure of this description as a part thereof.
Example 1 Acquisition of Wild-Type GLD GeneA plasmid pCGLD containing the wild-type GLD gene (SEQ ID NO: 2) whose entire base sequence is disclosed in Patent document 2 was isolated from Eschelichia coli JM109/pCGLD (FERM BP-10243). This can also be obtained by isolating a GLD gene derived from Aspergillus terreus FERM BP-08578 strain disclosed in patent document 1 by a common procedure and inserting the GLD gene into the KpnI-PstI sites in the multicloning site of a plasmid vector pCold III commercially available from Takara Bio Inc. in the form in which a region encoding a signal sequence (an amino acid sequence of amino acid residues 1 to 19 of SEQ ID NO: 1) has been removed.
Example 2 Acquisition of Transformant Having Modified GLD Gene Having Random Mutation Introduced ThereinIn order to introduce a random mutation into a GLD gene, oligonucleotides as shown below were designed and synthesized. Incidentally, a primer DNA (F) has a restriction enzyme KpnI site, and a primer DNA (R) has a restriction enzyme RstI site.
Primer DNA (F): 5′ cgtcatggtacctccaactccacgtccgccaa 3′ (SEQ ID NO: 3)
Primer DNA (R): 5′ agtgtactgcagctaacgacgaccagcatcgg 3′(SEQ ID NO: 4)
Using the plasmid pCGLD containing the wild-type GLD gene (SEQ ID NO: 2) obtained in Example 1, the primer DNA (F) represented by SEQ ID NO: 3 and the primer DNA (R) represented by SEQ ID NO: 4 synthesized in Example 2 and also using a GeneMorph II Random Mutagenesis Kit (manufactured by Stratagene, Inc.), a plasmid into which a random mutation was introduced was obtained according to an experimental procedure attached to the kit. After E. coli JM109 Competent Cells (manufactured by Takara Bio Inc.) used as a host were subjected to transformation, the resulting cells were plated on an LB agar plate containing ampicillin sodium (manufactured by Wako Pure Chemical Industries, Ltd.) serving as a selection marker at a concentration of 50 μg/mL and cultured overnight at 37° C., whereby transformants were obtained.
Example 3 Evaluation of Enzymatic Activity of GLD in Transformant Having Modified GLD Gene Having Random Mutation Introduced ThereinA solution A containing 1.2% (w/v) tryptone (manufactured by BD), 2.4% (w/v) yeast extract (manufactured by BD), 5% (w/v) glycerin (manufactured by Nacalai Tesque), and water was prepared by an autoclave treatment at 121° C. for minutes, and a solution B containing 2.3% potassium dihydrogen phosphate (manufactured by Nacalai Tesque), 12.5% dipotassium hydrogen phosphate (manufactured by Nacalai Tesque), and water was prepared by filtration using a 0.45 μm filter (manufactured by Advantec, Inc.). The solution A and the solution B were mixed in a sterile environment such that A:B=9:1, whereby a TB medium was prepared.
Into each well of a 96-well microplate (manufactured by Nunc, Inc.), 150 μL of the TB medium was dispensed, and the transformant colonies obtained in Example 2 were inoculated thereinto one by one.
After shaking culture at 37° C. and 1,000 rpm for 5 hours, the culture temperature was shifted to 15° C., and shaking was performed at 1,000 rpm for 30 minutes. Thereafter, 25 μL of an aqueous solution of isopropyl-β-D-1-thiogalactopyranoside (manufactured by Sigma-Aldrich Japan KK) was added thereto to give a final concentration of 0.1 mM, and shaking culture was performed again at 15° C. and 1,000 rpm for 13 hours.
The transformed cells after culture were collected by centrifugation, washed with distilled water, and centrifuged again. To the resulting microbial cells, 50 μL per well of CelLytic B Cell Lysis Reagent (manufactured by Sigma, Inc.) was added, and the mixture was left as such at 25° C. for 30 minutes. Then, the mixture was centrifuged and the supernatant was collected and used as a cell-free extract.
According to the above-mentioned method for the determination of enzymatic activity, the enzymatic activity of GLD in the cell-free extract was confirmed. Mutant strains in which the enzymatic activity (U/mL-b) of GLD per mL of the culture broth in the case where D-glucose was used as a substrate did not decreased to one-tenth or less of that of the wild-type strain and the ratio of activity for xylose/activity for glucose (Xyl/Glc) dominantly decreased as compared with that of the wild-type strain were selected and subjected to a genetic analysis. The results were as shown in Table 3.
In order to introduce a site-specific substitution mutation into a GLD gene, oligonucleotides as shown below were designed and synthesized.
Using the plasmid pCGLD containing the wild-type GLD gene obtained in Example 1, the primer DNA (G73A) represented by SEQ ID NO: 5 synthesized in Example 4, and a synthetic oligonucleotide complementary to the primer DNA and also using a QuikChange II Site-Directed Mutagenesis Kit (manufactured by Stratagene, Inc.), a plasmid into which a substitution mutation was introduced was obtained according to an experimental procedure attached to the kit. After E. coli JM109 Competent Cells (manufactured by Takara Bio Inc.) used as a host was subjected to transformation, the resulting cells were plated on an LB agar (manufactured by BD) plate containing ampicillin sodium (manufactured by Wako Pure Chemical Industries, Ltd.) serving as a selection marker at 50 μg/mL and cultured overnight at 37° C., whereby a transformant having a modified GLD gene encoding a modified GLD with a substitution of glycine with alanine at position 73 of the amino acid sequence of the wild-type GLD was obtained.
In the same manner as the above-mentioned method, a plasmid into which each substitution mutation was introduced was obtained using the plasmid pCGLD containing the wild-type GLD gene, each of the primer DNAs represented by SEQ ID NOS: to 17 synthesized in Example 4, and a synthetic oligonucleotide complementary to each of the primer DNAs. Transformation was also performed in the same manner as described above, and a transformant having a modified GLD gene encoding each modified GLD with a substitution of a part of the amino acid sequence of the wild-type GLD was obtained.
Example 6 Evaluation of Enzymatic Activity of GLD in Transformant Having Modified GLD Gene Having Site-Specific Substitution Mutation Introduced Therein Part 1In the same manner as the procedure described in Example 3, the transformants obtained in Example 5 were cultured, and the enzymatic activity of GLD in each of the cell-free extracts was determined and evaluated. Mutant strains in which the enzymatic activity (U/mL-b) of GLD per mL of the culture broth in the case where D-glucose was used as a substrate was maintained to a level of one-tenth or more of that of the wild-type strain GLD and the ratio of activity for xylose/activity for glucose (Xyl/Glc) dominantly decreased as compared with that of the wild-type strain were selected and subjected to a genetic analysis. The results are shown in Table 4.
The transformants obtained in Example 5 were cultured in the same manner as the procedure described in Example 3 using a medium prepared by subjecting a medium (adjusted to a pH of 7.0 with NaOH) containing 4% (w/v) tryptone (manufactured by BD), 2% (w/v) yeast extract (manufactured by BD), 4% (w/v) glycerin (manufactured by Nacalai Tesque), and water to an autoclave treatment at 121° C. for 15 minutes in place of the TB medium, and the enzymatic activity of GLD in each of the cell-free extracts was determined and evaluated. Mutant strains in which the enzymatic activity (U/mL-b) of GLD per mL of the culture broth in the case where D-glucose was used as a substrate was maintained to a level of one-tenth or more of that of the wild-type strain GLD and the ratio of activity for xylose/activity for glucose (Xyl/Glc) dominantly decreased as compared with that of the wild-type strain were selected and subjected to a genetic analysis. The results are shown in Table 5.
Among the transformants obtained in Example 2, using the transformant (R30 strain) having a modified GLD gene encoding a modified GLD with a substitution of lysine with glutamine at position 374 and a substitution of proline with leucine at position 527 of the amino acid sequence of the wild-type GLD, a plasmid containing the modified GLD gene was isolated by a common procedure.
Similarly, among the transformants obtained in Example 2, using the transformant (R25 strain) having a modified GLD gene encoding a modified GLD with a substitution of glycine with aspartic acid at position 73 of the amino acid sequence of the wild-type GLD, a plasmid containing the modified GLD gene was isolated by a common procedure.
In the same manner, among the transformants obtained in Example 5, using the transformant (S32 strain) having a modified GLD gene encoding a modified GLD with a substitution of arginine with histidine at position 102 of the amino acid sequence of the wild-type GLD, a plasmid containing the modified GLD gene was isolated by a common procedure.
Further, in the same manner, among the transformants obtained in Example 5, using the transformant (S16 strain) having a modified GLD gene encoding a modified GLD with a substitution of glycine with serine at position 73 of the amino acid sequence of the wild-type GLD, a plasmid containing the modified GLD gene was isolated by a common procedure.
Example 9The modified GLD genes were amplified by PCR using the plasmids containing the respective modified GLD genes obtained in Example 8 as templates and also using the following primers (first, the primers 1 and 3 were used, and thereafter the primers 2 and 3 were used) synthesized based on the base sequence of a GLD gene derived from Aspergillus terreus FERM BP-08578 strain disclosed in Patent document 1.
(F: 5′ side, R: 3′ side, bases in the parenthesis: restriction enzyme cleavage sites, underlined bases: enoA 5′-UTR, others: ORF)
As a host to be used, Aspergillus oryzae NS4 strain (derived from RIB 40 strain) was used. This strain was bred in Brewery Laboratory in 1997 as described in a publicly known document 1 (Biosci. Biotech. Biochem., 61 (8), 1367-1369, 1997) and has been used in the analysis of transcription factors, the breeding of high-producing strains of various enzymes, and the like, and those for distribution are available.
For this strain, a modified amylase gene promoter derived from Aspergillus oryzae described in a publicly known document 2 (Development of the heterologous gene expression system for Aspergillus species, MINETOKI Toshitaka, Chemistry & Biology, 38, 12, pp. 831-838, 2000) was used, and the above-mentioned modified GLD gene was ligated to downstream of the promoter, whereby a vector which can express this gene was prepared.
Transformation was performed basically in accordance with the methods described in the publicly known document 2 and a publicly known document 3 (Genetic engineering technology of Koji mold for sake, GOMI Katsuya, Journal of the Brewing Society of Japan, pp. 494-502, 2000), whereby a transformant was obtained.
Comparative Example Cloning of Wild-Type GLD Gene (SEQ ID NO: 1) into Aspergillus oryzaeA vector having the wild-type GLD gene (SEQ ID NO: 1) was prepared in the same manner as the method described in Example 8 using the plasmid pCGLD obtained in Example 1, and Aspergillus oryzae NS4 strain was transformed with the vector, whereby a transformant was obtained.
Example 10 Preparation of Enzyme Solution from Transformed Aspergillus oryzaeEach of the transformants obtained in Example 9 and Comparative example was subjected to shaking culture at 30° C. for 3 days using 20 mL of a liquid culture medium at pH 6.0 containing 1% (w/v) glucose (manufactured by Wako Pure Chemical Industries, Ltd.), 2% (w/v) defatted soybean (manufactured by Nihon Syokuhan-Sya), 0.5% (w/v) corn steep liquor (manufactured by San-ei Sucrochemical Co., Ltd.), 0.1% (w/v) magnesium sulfate (manufactured by Nacalai Tesque), and water. After completion of the culture, the culture broth was centrifuged and the culture supernatant was collected.
The collected culture supernatant was filtered using a 10 μm membrane filter (manufactured by Advantec, Inc.), whereby an enzyme solution showing a band of about 81 kDa in SDS polyacrylamide gel electrophoresis was obtained.
Example 11 Evaluation of Enzymatic Activity of Enzyme Solution Obtained from Transformed Aspergillus oryzaeAccording to the above-mentioned method for the determination of enzymatic activity, the enzymatic activity (U/mL-b) of GLD in the enzyme solution obtained in Example 10 and the “ratio of activity for xylose/activity for glucose” (Xyl/Glc) were confirmed, and the results were as shown in Table 6. From these results, it is found that a transformant producing a modified GLD having a decreased activity for xylose as compared with the wild-type GLD was obtained.
From the above results, it is found that a modified GLD was obtained by culturing a transformant producing a modified GLD having a decreased activity for xylose as compared with the wild-type GLD.
Further, using a culture supernatant of the above-mentioned transformant having the modified GLD gene encoding the modified GLD with a substitution of glycine with aspartic acid at position 73 of the amino acid sequence of the wild-type GLD, the enzyme was purified in accordance with the method described in patent document 2, whereby a purified enzyme showing a single band of about 81 kDa in SDS polyacrylamide gel electrophoresis was obtained.
When the “ratio of activity for xylose/activity for glucose” of this purified modified GLD enzyme was confirmed according to the above-mentioned method for the determination of enzymatic activity, in the case of the wild-type GLD, the ratio was 8.6%, and on the other hand, in the case of the modified GLD with a substitution of glycine with aspartic acid at position 73, the ratio was 4.8%.
Incidentally, in the case of the above-mentioned purified modified GLD, the “ratio of activity for maltose/activity for glucose” was 0.91%, and the “ratio of activity for galactose/activity for glucose” was 0.57%, and therefore, it was revealed that the activity was extremely low.
From the above results, it was confirmed that a modified GLD which did not act on maltose and galactose and had a decreased activity for xylose could be obtained by culturing a transformant producing a modified GLD not only having a decreased activity for maltose and galactose, but also having a decreased activity for xylose as compared with a wild-type GLD.
Example 13 Determination of D-Glucose Using Modified GLDThe determination of D-glucose was performed by measuring a change in the absorbance using the enzyme solution of the purified enzyme solution (specific activity: 631 U/mg) from the transformant producing the modified GLD with a substitution of glycine with aspartic acid at position 73 obtained in Example 12. In a reaction measurement system using a plate reader, D-glucose was added such that the final concentration of D-glucose became 0.3, 1.0, 5.0, 10, or 33 mM, and a change in the absorbance of DCIP at 600 nm (ΔAbs/min) was determined. When the change in the absorbance was plotted against the known glucose concentrations (0.3, 1.0, 5.0, 10, and 33 mM), the results shown in Table 7 were obtained and a calibration curve could be prepared based on these results (
In addition to Example 4, in order to introduce a site-specific substitution mutation into a GLD gene, oligonucleotides as shown below were designed and synthesized.
In the same manner as the method described in Example 5, a plasmid into which each substitution mutation was introduced was obtained using the plasmid pCGLD containing the wild-type GLD gene, each of the primer DNAs represented by SEQ ID NOS: 21 to 34 synthesized in Example 14, and a synthetic oligonucleotide complementary to each of the primer DNAs. Transformation was also performed in the same manner as described above, and a transformant having a modified GLD gene encoding each modified GLD with a substitution of a part of the amino acid sequence of the wild-type GLD was obtained.
Example 16 Evaluation of Enzymatic Activity of GLD in Transformant Having Modified GLD Gene Having Site-Specific Substitution Mutation Introduced Therein Part 3The transformants obtained in Example 15 were cultured in the same manner as the procedure described in Example 3 using a medium prepared by subjecting a medium (adjusted to a pH of 7.0 with NaOH) containing 4% (w/v) tryptone (manufactured by BD), 2% (w/v) yeast extract (manufactured by BD), 4% (w/v) glycerin (manufactured by Nacalai Tesque), and water to an autoclave treatment at 121° C. for 15 minutes in place of the TB medium, and the enzymatic activity of GLD in each of the cell-free extracts was determined and evaluated. Mutant strains in which the enzymatic activity (U/mL-b) of GLD per mL of the culture broth in the case where D-glucose was used as a substrate was maintained to a level of one-tenth or more of that of the wild-type strain GLD and the ratio of activity for xylose/activity for glucose (Xyl/Glc) dominantly decreased as compared with that of the wild-type strain were selected and subjected to a genetic analysis. The results are shown in Table 8.
A modified GLD encoded by a polynucleotide of the invention does not substantially act on maltose and galactose in the determination of blood glucose and has a decreased activity for xylose as compared with a wild-type GLD, and therefore can be utilized also in a self-monitoring of blood glucose (SMBG) device with higher accuracy, and largely contributes to self-care and self-treatment by patients with diabetes.
Claims
1. A modified glucose dehydrogenase (GLD), comprising a substitution of at least one amino acid residue selected from the group consisting of amino acid residues at positions 37, 69, 72, 73, 76, 78, 102, 217, 228, 240, 356, 407, 424, 437, 527, and 530 in an amino acid sequence of a wild-type FAD-conjugated glucose dehydrogenase (GLD) represented by SEQ ID NO: 1, and having a decreased ratio of activity for xylose/activity for glucose as compared with the wild-type GLD.
2. The modified GLD according to claim 1, wherein the ratio of activity for xylose/activity for glucose is decreased to 0.85 times or less of that of the wild-type GLD.
3. The modified GLD according to claim 1, wherein the amino acid substitution is selected from the group consisting of D72A, G73D, G73A, G73S, G73C, G73Q, G73W, G73Y, G73E, G73H, R102H, Y228H, V356A, and P527L, and S37V, S37G, T691, L76F, F78L, R102V, N2175, P240I, P240L, Q407A, Q4075, Y424S, A437I, and T530A.
4. A modified glucose dehydrogenase (GLD), comprising an amino acid substitution selected from the group consisting of N64D+R102H+L250Q, G73D, Y228H+A589T, K374Q+P527L, V356A, D72A+G2105, G73A, P527L, D72A, Y228H, G73C, G73H, R102H, D72A+G73D, G73S, G73Q, G73W, G73Y, and G73E, and S37V, S37G, T69I, L76F, F78L, R102V, N217S, P240I, P240L, Q407A, Q407S, Y424S, A437I, and T530A in an amino acid sequence of a wild-type FAD-conjugated glucose dehydrogenase (GLD) represented by SEQ ID NO: 1.
5. A polynucleotide encoding the modified GLD according to claim 1.
6. The polynucleotide according to claim 5, wherein the polynucleotide encoding the amino acid sequence of the wild-type FAD-conjugated glucose dehydrogenase (GLD) represented by SEQ ID NO: 1 has a base sequence represented by SEQ ID NO: 2.
7. A recombinant vector, comprising the polynucleotide according to claim 5.
8. A transformed cell, which is produced by using the recombinant vector according to claim 7.
9. The transformed cell according to claim 8, which is Escherichia coli or Aspergillus oryzae.
10. A method for the production of a modified GLD, characterized by comprising: culturing the transformed cell according to claim 8; and collecting a modified GLD from the resulting culture.
11. A method for the determination of glucose, characterized by using the modified GLD according to claim 1.
12. A reagent composition for use in the determination of glucose, characterized by comprising the modified GLD according to claim 1.
13. A biosensor for use in the determination of glucose, characterized by using the modified GLD according to claim 1.
14. A polynucleotide encoding the modified GLD according to claim 4.
15. The polynucleotide according to claim 14, wherein the polynucleotide encoding the amino acid sequence of the wild-type FAD-conjugated glucose dehydrogenase (GLD) represented by SEQ ID NO: 1 has a base sequence represented by SEQ ID NO: 2.
16. A recombinant vector, comprising the polynucleotide according to claim 14.
17. A transformed cell, which is produced by using the recombinant vector according to claim 16.
18. The transformed cell according to claim 17, which is Escherichia coli or Aspergillus oryzae.
19. A method for the production of a modified GLD, characterized by comprising: culturing the transformed cell according to claim 17; and collecting a modified GLD from the resulting culture.
20. A method for the determination of glucose, characterized by using a modified GLD obtained by the production method according to claim 19.
21. A reagent composition for use in the determination of glucose, characterized by comprising a modified GLD obtained by the production method according to claim 19.
22. A biosensor for use in the determination of glucose, characterized by using a modified GLD obtained by the production method according to claim 19.
Type: Application
Filed: Dec 26, 2008
Publication Date: Dec 23, 2010
Patent Grant number: 8445221
Inventors: Michinari Honda (Hiroshima), Ryo Takenaka (Hiroshima), Fuminao Kobayashi (Hiroshima)
Application Number: 12/810,213
International Classification: C12Q 1/54 (20060101); C12N 9/04 (20060101); C07H 21/04 (20060101); C12N 15/63 (20060101); C12N 1/21 (20060101); C12N 1/15 (20060101);
