Algal elongases

- Aurora Algae, Inc.

Provided herein are exemplary isolated nucleotide sequences encoding polypeptides having elongase activity, which utilize fatty acids as substrates.

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Description
CROSS-REFERENCE TO RELATED APPLICATIONS

The present application claims the benefit and priority of U.S. Provisional Patent Application Ser. No. 61/480,364 filed on Apr. 28, 2011, titled “Elongases,” which is hereby incorporated by reference.

The present application is related to U.S. Non-Provisional patent application Ser. No. 12/581,812 filed on Oct. 19, 2009, titled “Homologous Recombination in an Algal Nuclear Genome,” which is hereby incorporated by reference.

The present application is related to U.S. Non-Provisional patent application Ser. No. 12/480,635 filed on Jun. 8, 2009, titled “VCP-Based Vectors for Algal Cell Transformation,” which is hereby incorporated by reference.

The present application is related to U.S. Non-Provisional patent application Ser. No. 12/480,611 filed on Jun. 8, 2009, titled “Transformation of Algal Cells,” which is hereby incorporated by reference.

REFERENCE TO SEQUENCE LISTINGS

The present application is filed with sequence listing(s) attached hereto and incorporated by reference.

BACKGROUND OF THE INVENTION Field of the Invention

This invention relates to molecular biology, and more specifically, to algal elongases.

SUMMARY OF THE INVENTION

Isolated nucleotide sequences encoding polypeptides having elongase activity, which utilize fatty acids as substrates.

BRIEF DESCRIPTION OF THE DRAWINGS

FIG. 1 illustrates the nucleotide sequence encoding elongase 1 (SEQ ID NO:1).

FIG. 2 illustrates the nucleotide sequence encoding elongase 2 (SEQ ID NO:2).

FIG. 3 illustrates the nucleotide sequence encoding elongase 3 (SEQ ID NO:3).

FIG. 4 illustrates the nucleotide sequence encoding elongase 4 (SEQ ID NO:4).

FIG. 5 illustrates the nucleotide sequence encoding elongase 5 (SEQ ID NO:5).

FIG. 6 illustrates the nucleotide sequence encoding elongase 6 (SEQ ID NO:6).

FIG. 7 illustrates the nucleotide sequence encoding elongase 7 (SEQ ID NO:7).

FIG. 8 illustrates the nucleotide sequence encoding elongase 8 (SEQ ID NO:8).

FIG. 9 illustrates the amino acid sequence encoding elongase 1 (SEQ ID NO:9).

FIG. 10 illustrates the amino acid sequence encoding elongase 2 (SEQ ID NO:10).

FIG. 11 illustrates the amino acid sequence encoding elongase 3 (SEQ ID NO:11).

FIG. 12 illustrates the amino acid sequence encoded by elongase 4 (SEQ ID NO:12).

FIG. 13 illustrates the amino acid sequence encoded by elongase 5 (SEQ ID NO:13).

FIG. 14 illustrates the amino acid sequence encoded by elongase 6 (SEQ ID NO:14).

FIG. 15 illustrates the amino acid sequence encoded by elongase 7 (SEQ ID NO:15).

FIG. 16 illustrates the amino acid sequence encoded by elongase 8 (SEQ ID NO:16).

 DETAILED DESCRIPTION OF THE INVENTION

A fatty acid is a carboxylic acid with a long aliphatic tail (chain), which is either saturated or unsaturated. Saturated fatty acids are long-chain carboxylic acids that usually have between 12 and 24 carbon atoms and have no double bonds. Unsaturated fatty acids have one or more double bonds between carbon atoms. Most naturally occurring fatty acids have a chain of an even number of carbon atoms, from 4 to 28. Elongases are enzymes which lengthen fatty acids by adding two carbon atoms to a fatty acid's carboxylic acid end.

Provided herein are isolated nucleotide sequences encoding polypeptides having elongase activity, which utilize fatty acids as substrates.

The inventors sequenced the entire genome of algal genus Nannochloropsis and identified genes involved in fatty acid metabolism. They identified various elongases, including exemplary elongases which they designated as elongases 1-9.

The inventors manipulated the activities of the above-specified exemplary elongase genes by:

1. Overexpression of the subject elongase gene with a strong promoter.

2. Promoter replacement or promoter insertion in front of the subject elongase gene within the genome via homologous recombination.

3. Knock out of the subject elongase gene via insertion of a transformation construct into the gene or replacement of a part of or the entire subject elongase gene via homologous recombination.

Exemplary support for the above-mentioned methods may be found in U.S. Non-Provisional Patent Application Ser. No. 12/581,812 filed on Oct. 19, 2009, titled “Homologous Recombination in an Algal Nuclear Genome,” U.S. Non-Provisional Patent Application Ser. No. 12/480,635 filed on Jun. 8, 2009, titled “VCP-Based Vectors for Algal Cell Transformation,” and U.S. Non-Provisional Patent Application Ser. No. 12/480,611 filed on Jun. 8, 2009, titled “Transformation of Algal Cells,” all of which are hereby incorporated by reference.

A transformation construct or vector may comprise any number of promoters, genes, and/or other nucleic acid polymers (naturally occurring or synthetic) and/or their analogs, or other compounds that do not interfere with the ability of the transformation construct to enter the algal cell or the algal genome, or to function. In some embodiments, additional nucleotides may appear in the transformation construct to facilitate or direct the insertion of the construct (or any part thereof) into a desired location in the genome.

Accordingly, the inventors were able to manipulate the activities of the various exemplary elongases for the purpose of modifying the contents of certain fatty acids within algal genus Nannochloropsis.

Some of these elongases, i.e. Elongases 6-8, are down-regulated under conditions when poly unsaturated fatty acid (“PUFA”) biosynthesis is down-regulated as well (i.e. during Nitrogen starvation). These genes are excellent targets for over-expression, in order to achieve elevated PUFA biosynthesis. Down-regulation of these (or other) genes, as an example, by replacement of the endogenous promoter or insertion of a weaker promoter in front of the respective elongase gene could lead to a higher content of short chain fatty acids. Down-regulation of transcription could also be achieved, in some cases, by insertion of a commonly strong promoter in front of the respective elongase gene, presumably by modifying the respective chromatin arrangement around the said elongase gene, thus leading to a lower transcription level. Also, the introduction of point mutations into the gene when inserting another promoter in front of such a gene via the homologous recombination flanks utilized, could lead to an altered activity of the respective gene products.

Over expression and knock out mutants of said elongase genes suggest that at least 4 elongases with overlapping functions are operating in the biosynthesis pathway leading to Eicosapentaenoic acid (“EPA”): these are, but not limited to: Elongases 5, 6, 7, and 9. Transcriptome analysis also suggests that Elongase 8 is operating as well in the fatty acid biosynthesis pathway to EPA.

FIG. 1 illustrates the nucleotide sequence encoding elongase 1 (SEQ ID NO:1).

FIG. 2 illustrates the nucleotide sequence encoding elongase 2 (SEQ ID NO:2).

FIG. 3 illustrates the nucleotide sequence encoding elongase 3 (SEQ ID NO:3).

FIG. 4 illustrates the nucleotide sequence encoding elongase 4 (SEQ ID NO:4).

FIG. 5 illustrates the nucleotide sequence encoding elongase 5 (SEQ ID NO:5).

FIG. 6 illustrates the nucleotide sequence encoding elongase 6 (SEQ ID NO:6).

FIG. 7 illustrates the nucleotide sequence encoding elongase 7 (SEQ ID NO:7).

FIG. 8 illustrates the nucleotide sequence encoding elongase 8 (SEQ ID NO:8).

FIG. 9 illustrates the amino acid sequence encoding elongase 1 (SEQ ID NO:9).

FIG. 10 illustrates the amino acid sequence encoding elongase 2 (SEQ ID NO:10).

FIG. 11 illustrates the amino acid sequence encoding elongase 3 (SEQ ID NO:11).

FIG. 12 illustrates the amino acid sequence encoded by elongase 4 (SEQ ID NO:12).

FIG. 13 illustrates the amino acid sequence encoded by elongase 5 (SEQ ID NO:13).

FIG. 14 illustrates the amino acid sequence encoded by elongase 6 (SEQ ID NO:14).

FIG. 15 illustrates the amino acid sequence encoded by elongase 7 (SEQ ID NO:15).

FIG. 16 illustrates the amino acid sequence encoded by elongase 8 (SEQ ID NO:16).

While various embodiments have been described above, it should be understood that they have been presented by way of example only, and not limitation. Thus, the breadth and scope of a preferred embodiment should not be limited by any of the above-described exemplary embodiments.

Claims

1. A transformation vector comprising an isolated nucleic acid encoding a polypeptide having elongase activity, wherein the isolated nucleic acid comprises the nucleotide sequence set forth in SEQ ID NO:1.

2. The transformation vector of claim 1, wherein the polypeptide comprises the amino acid sequence set forth in of SEQ ID NO:9.

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Patent History
Patent number: 8809046
Type: Grant
Filed: Apr 29, 2012
Date of Patent: Aug 19, 2014
Patent Publication Number: 20120277418
Assignee: Aurora Algae, Inc. (Hayward, CA)
Inventors: Oliver Kilian (Alameda, CA), Bertrand Vick (Berkeley, CA)
Primary Examiner: David J Steadman
Assistant Examiner: Paul Holland
Application Number: 13/459,215
Classifications
Current U.S. Class: Vector, Per Se (e.g., Plasmid, Hybrid Plasmid, Cosmid, Viral Vector, Bacteriophage Vector, Etc.) Bacteriophage Vector, Etc.) (435/320.1); Encodes An Enzyme (536/23.2)
International Classification: C07H 21/04 (20060101); C12N 15/00 (20060101);