Polypeptides capable of interacting with human topoisomerase III alpha

Abstract

The invention concerns novel peptides capable of interacting with the human topoisomerase III&agr; and the nucleic acid sequences coding for said polypeptides. The invention also concerns a method for identifying compounds capable of interacting with said polypeptides and a method for identifying molecules capable of modulating the interaction of the topoisomerase III&agr; with said polypeptides.

Description

[0001] The present invention relates to novel polypeptides capable of interacting with human topoisomerase III&agr; and to the nucleic acid sequences encoding these polypeptides. It also relates, in addition, to a method for identifying compounds capable of interacting with said polypeptides and to a method for identifying molecules capable of modulating the interaction of topoisomerase III&agr; with said polypeptides.

[0002] The replication of DNA is a complex mechanism which involves a large number of factors. DNA exists in the physiological state in a supercoiled form and access to the information which it contains requires substantial modification of the degree of coiling. Replication requires the suppression of the supercoils, the separation of the two strands of the DNA double helix and the maintaining of DNA in single-stranded form.

[0003] The modification of the degree of coiling is brought about in vivo by topoisomerases which are enzymes capable of modifying the DNA superstructures. It is possible to distinguish type I topoisomerases which cut only one of the two DNA strands and which eliminate the supercoils, and type II topoisomerases which act by cutting the two DNA strands and which are capable of eliminating or creating the supercoils. Eukaryotic topoisomerases are less well known than their prokaryotic homologs and their mechanism of action has still not yet been elucidated to date.

[0004] The separation of the two strands of a DNA duplex is catalyzed by a group of enzymes, called DNA helicases, which act in an ATP-dependent manner so as to produce the single-stranded DNA used as template for the DNA replication and transcription processes. Generally, the helicases bind to the single-stranded DNA or to the junctions between the single- and double-stranded DNA, and move in a single direction along the DNA in the double-stranded region, destroying the hydrogen bonds joining the two strands. All helicases exhibit a DNA-dependent ATPase (or NTPase) activity which hydrolyzes the gamma phosphate of the ribonucleoside or deoxyribonucleoside 5′-triphosphate and provides the energy necessary for the reaction. The first helicase was discovered in E. coli in 1976. Since then, more than 60 helicases have been isolated in prokaryotes and eukaryotes. The role of human helicases has still not been elucidated in most cases, with the exception of HDHII (repair of the lesions induced by X-rays), HDHIV (assembly of preribosomes), ERCC2 and ERCC3, which are involved in repair through excision and cell viability. Little is known on the structure of these helicases. A large portion of the information available on the structures and functions of helicases has been obtained by comparative analysis of the amino acid sequences. In particular, conserved motifs have made it possible to group helicases into subfamilies based on the sequence homologies.

[0005] Human Topoisomerase III belongs to the family of type IA topoisomerases and therefore exhibits sequence homologies with E. coli topoisomerases I and III, yeast Topoisomerase III as well as reverse gyrase from archaebacteria. Human Topoisomerase III is now called Topoisomerase III&agr; so as to differentiate it from human topoisomerase III&bgr; which was recently discovered during the sequencing of the human immunoglobulin &lgr; gene locus (Kawasaki, K., Minoshima, S., Nakato, E., Shibuya, K., Shintani, A., Schmeits, J. L., Wang, J. and Shimizu, N. 1997, Genome Research 7: 250-261), and for which no functional activity has been shown. Yeast-expressed and unpurified topoisomerase III&agr; exhibits an activity of partial relaxation of a highly negatively supercoiled DNA (Hanai, R., Caron, P. R. and Wang, J. C. 1993. Proc. Natl. Acad. Sci. USA 93: 3653-3657).

[0006] Topoisomerase III&agr; is a protein of 976 amino acids and with a molecular weight of about 110 kDa. The gene encoding human Topoisomerase III&agr; is present in a single copy on chromosome 17p11.2-12 (Hanai, R., Caron, P. R. and Wang, J. C. 1996. Proc. Natl. Acad. Sci. USA 93: 3653-3657). A murine homolog of Topoisomerase III was recently cloned (Seki, T., Deki, M., Katada, T. and Enomoto, T. 1998. Biochim Biophys Acta 1396: 127-131).

[0007] Topoisomerase III&agr; exhibits a strong sequence homology with yeast Topoisomerase III, namely 44% sequence identity and 61% similarity. The homology which it exhibits with bacterial topoisomerases I and III is less strong, namely 24% identity and 44% similarity. However, Topoisomerase III&agr; resembles E. coli Topoisomerase I more than it resembles the other members of the group of type IA topoisomerases from the point of view of the organization of the protein into domains. Indeed, these two polypeptides contain a C-terminal domain which has no equivalent in E. coli or yeast Topoisomerase III. This C-terminal domain contains motifs with 4 cysteines (3 motifs for E. coli Topoisomerase I and 1.5 motif for human Topoisomerase III&agr;), as well as an extreme C-terminal domain for which a DNA-binding role has been demonstrated for E. coli Topoisomerase I.

[0008] The role of human topoisomerase III&agr; in the cell has not yet been identified.

[0009] Human Topoisomerase III&agr; appears to be essential, at least during embryogenesis, since the knock-out of the murine homolog of Topoisomerase III&agr; is lethal (Li, W. and Wang, J. C. 1998 Proc. Natl. Acad. Sci. USA 95: 1010-1013). The messenger RNAs for Topoisomerase III&agr; are present in numerous tissues (heart, brain, placenta, lung, liver, skeletal muscle, kidney, pancreas) in the form of three transcripts of 7.2, 6 and 4 kilobases in size (Fritz, E., Elsea, S. H., Patel, P. I. and Meyn, M. S. 1997 Proc. Natl. Acad. Sci. USA 94: 4538-4542).

[0010] Moreover, it has been assumed that Topoisomerase III&agr; plays a role in maintaining the stability of the genome. Indeed, the cDNA CAT4.5, encoding a truncated human Topoisomerase III&agr; of 141 N-terminal amino acids, is capable of complementing the phenotype for hypersensitivity to ionizing radiation in AT (Ataxia-Telangectasia) cells exhibiting a mutation in the ATM gene (Fritz, E., Elsea, S. H., Patel, P. I. and Meyn, M. S. 1997 Proc. Natl. Acad. Sci. USA 94: 4538-4542).

[0011] In yeast, two independent studies have shown the existence of an interaction between the helicase SGS1 and yeast Topoisomerase III. On the one hand, the sgs1- mutants are suppressers of the top3- phenotype (slow growth, hyperrecombination) in the yeast S. cerevisiae (Qangloff, S., McDonald, J. P., Bendixen, C., Arthur, L. and Rothstein, R. 1994. Mol. Cell. Biol. 14: 8391-8398). On the other hand, it has been shown that the first 500 amino acids of SGS1 interact with yeast Topoisomerase III (Gangloff, S., McDonald, J. P., Bendixen, C., Arthur, L. and Rothstein, R. 1994. Mol. Cell. Biol. 14: 8391-8398, Lu, J., Mullen, J. R., Brill, S. J., Kleff, S., Romeo, A. M. and Sternglanz, R. 1996. Nature 383: 678-679). However, to date, no interaction between a helicase and human Topoisomerase III&agr; has been identified.

[0012] The identification of partners of human topoisomerase III&agr; therefore constitutes a major challenge for the understanding of the role of human topoisomerase III&agr;, and of its mechanism of action.

[0013] The present invention results from the demonstration of novel polypeptides capable of interacting with topoisomerase III&agr; (called hereinafter polypeptide partners of topoisomerase III&agr;). It also results from the discovery that these polypeptides show a strong homology with proteins which exhibit structural characteristics common to RNA helicases and for which no function had so far been described. The demonstration of this interaction and of these homologies designate these proteins as DNA helicase partners of topoisomerase III&agr;. The identification of these partners makes it possible to envisage numerous applications based on the combined action of these partner proteins and of topoisomerase III&agr;; these applications relate in particular to:

[0014] 1) The destruction of the nucleosomal structure: to undergo some processes such as replication, transcription, repair or recombination, DNA should be accessible to the corresponding enzymatic machineries and, to do this, the nucleosomal structure should be transiently destroyed. It is thus possible to envisage that helicase locally separates the DNA strands and creates positive supercoils ahead of it and negative supercoils behind it. The positive twist is absorbed by the disruption of the nucleosomes, while the negative twist is selectively relaxed by type IA topoisomerase.

[0015] 2) The positive supercoiling of DNA: the interaction between helicase and type IA topoisomerase is likely to reconstitute in a eukaryotic organism the reverse gyrase activity of thermophilic archaebacteria. Indeed, it has been shown that Sulfolobus acidocaldarius reverse gyrase possesses at the N terminus a helicase domain containing the 8 motifs of helicases with a “DEAD” motif, and at the C terminus a topoisomerase domain homologous to the type IA topoisomerases (Confalonieri, F., Edie, C., Nadal, M., Bouthier de la Tour, C., Forterre, P. and Duguet, M. 1993. Proc. Natl. Acad. Sci. USA 90: 4753-4757); this enzyme relaxes the negatively supercoiled DNA and introduces positive supercoils into the circular DNA in an ATP-dependent manner (Forterre, P., Mirambeau, G., Jaxel, C., Nadal, M. and Duguet, M. 1985. EMBO J. 4: 2123-2128). This eukaryotic reverse gyrase activity can serve to eliminate particular DNA structures such as the cruciform DNA, the Z DNA, mismatches, recombination intermediates, and the like. From these observations and from the demonstration that topoisomerase III&agr; is capable of interacting with a protein possessing the properties of a DNA helicase, it is possible to envisage the production in vivo or in vitro of a topoisomerase III&agr;/protein partner complex constituting an enzymatic complex having reverse gyrase type functions. It should be noted that such a function of positive supercoiling of DNA has still never been described in eukaryotes.

[0016] 3) The segregation of newly replicated chromosomes: at the end of the replication of DNA, topological problems appear at the level of the point of convergence of two replication forks. A mechanism which makes it possible to solve this topological problem involves the concerted action of a helicase and a type IA topoisomerase, capable of decatenating two single-stranded DNA molecules. This model (Wang, J. C. 1991. J. Biol. Chem. 266: 6659-6662; Rothstein, R. and Gangloff, S. 1995. Genome Research 5: 421-426) proposes that at the point where two replication forks meet, replication is stopped, leaving portions of entangled single-stranded DNAs. These are then separated by means of the concerted action of helicase and topoisomerase. The synthesis of DNA is then completed at the level of the single-stranded regions.

[0017] 4) The recombination and the stability of the genome: it has been shown that mutants of Top3- yeast or Sgs1- mutants both exhibit a hyperrecombination phenotype while Top3-/Sgs1- double mutants recover a normal phenotype. This shows that yeast Topoisomerase III and helicase SGS1 probably act in a concerted manner to maintain a low rate of recombination, for example by a positive supercoiling activity of the reverse gyrase type, or by a more direct mechanism at the level of the pairings of the recombination intermediates.

[0018] Unlike the helicase SGS1, known to interact with yeast topoisomerase III, the protein partner of topoisomerase III&agr; identified by the applicant does not belong to the family of RecQ type helicases.

[0019] The polypeptides according to the invention show a high degree of homology with the sequence of a human protein DDX14 published by Chung et al (Chung, J., Lee, S-G., and Song, K. 1995. Korean J. Biochem. 27: 193-197). The protein DDX14 exhibits a significant sequence homology with an RNA helicase of murine origin; however, the helicase activity of this protein has not yet been demonstrated and the function of DDX14 has not yet been elucidated.

[0020] The polypeptides according to the invention also show a high degree of homology with the sequence of a human protein DBX1 published by Lahn et al (Lahn, T. and Page, D. C. 1997. Science. 278: 675-680). The protein DBX1 encodes a protein which exhibits homologies with RNA helicases but its helicase activity has never been demonstrated and the function of the DBX1 protein has not yet been identified.

[0021] The DBX1 protein encodes a protein of 662 amino acids. The corresponding gene is situated on the X sex chromosome and its homolog situated on the Y chromosome is 91% identical at the protein level. The nucleic and polypeptide sequences of DBX1 are presented in the sequences SEQ ID No. 5 and SEQ ID No. 6. The expression of the DBX1 gene appears to be ubiquitous. It has now been demonstrated that the DBX1 protein possesses the 8 motifs characteristic of helicases of the “DEAD” family. More precisely, it belongs to the subfamily represented by the helicase PL10, and whose recorded members are the helicases DED1 and DBP1 from yeast, the helicase An3 from amphibians and the murine helicases PL10, mDEAD2 and mDEAD3 (Gee, S. L. and Conboy, J. G. 1994. Gene 140: 171-177). Helicases belonging to this subfamily contain, in addition to the central catalytic domain containing, the 8 conserved motifs of helicases, particular N- and C-terminal domains. The C-terminal domain is rich in arginines and serines, which resembles the domains of splicing factors. However, in the case of the helicases of this subfamily, this domain rich in arginines and serines is shorter and does not possess as many RS dipeptides as in the prototype domain of splicing factors.

[0022] The invention also provides a method for identifying molecules capable of blocking the interaction between human Topoisomerase III&agr; and a polypeptide partner of topoisomerase III&agr;. Such a method makes it possible to identify molecules which are in particular capable of blocking the reverse gyrase type activity of these two proteins. Such molecules are useful for modulating the processes of division, replication, transcription, translation, splicing, repair or recombination of DNA. These molecules are also capable of possessing a cytotoxic type antitumor activity because of the disruption of these basic processes at the level of the DNA.

[0023] A first subject of the invention therefore relates to nucleotide sequences encoding polypeptides capable of interacting with topoisomerase III&agr;.

[0024] Preferably, the nucleotide sequences according to the invention encode a polypeptide comprising all or part of the polypeptide sequence described in the sequence SEQ ID No. 4 or its derivatives.

[0025] For the purposes of the present invention, the term derived polypeptide sequence denotes any polypeptide sequence differing from the sequence considered, obtained by one or more modifications of a genetic and/or chemical nature, and possessing the capacity to interact with topoisomerase III&agr;. Modification of a genetic and/or chemical nature is understood to mean any mutation, substitution, deletion, addition and/or modification of one or more residues. Such derivatives may be generated with different aims, such as in particular that of improving its levels of production, that of increasing its resistance to proteases or of improving its passage across the cell membranes, that of increasing its therapeutic efficacy or of reducing its side effects, that of increasing the affinity of the peptide for its site of interaction, or that of conferring novel pharmacokinetic and/or biological properties on it. Advantageously, the variants comprise deletions or mutations affecting amino acids whose presence is not decisive for the activity of the derivative. Such amino acids may be identified for example by tests of cellular activity as described in the examples.

[0026] Preferably still, the nucleotide sequences according to the present invention comprise all or part of the nucleotide sequence described in the sequence SEQ ID No. 3 and encoding the sequence SEQ ID No. 4 or the sequences derived from this nucleotide sequence.

[0027] For the purposes of the present invention, the term derived nucleotide sequence denotes any sequence differing from the sequence considered because of the degeneracy of the genetic code, obtained by one or more modifications of a genetic and/or chemical nature, as well as any sequence hybridizing with these sequences or fragments thereof and encoding a polypeptide capable of interacting with Topoisomerase III&agr;. The expression modification of a genetic and/or chemical nature is understood to mean any mutation, substitution, deletion, addition and/or modification of one or more residues. The term derivative also comprises the sequences homologous to the sequence considered, which are derived from other cellular sources and in particular from cells of human origin, or from other organisms. Such homologous sequences may be obtained by hybridization experiments. The hybridizations may be carried out starting with nucleic acid libraries, using the native sequence or a fragment thereof as probe, under variable hybridization conditions.

[0028] The nucleotide sequences according to the invention may be of artificial origin or otherwise. They may be genomic sequences, cDNA, RNA, hybrid sequences or synthetic or semisynthetic sequences. These sequences may be obtained for example by screening DNA libraries (cDNA library, genomic DNA library) by means of probes produced on the basis of sequences presented above. Such libraries may be prepared from cells of different origins by conventional molecular biology techniques known to persons skilled in the art. The nucleotide sequences of the invention may also be prepared by chemical synthesis or by mixed methods including chemical or enzymatic modification of sequences obtained by the screening of libraries. In general, the nucleic acids of the invention may be prepared according to any technique known to persons skilled in the art.

[0029] The subject of the present invention is also polypeptides capable of interacting with topoisomerase III&agr;.

[0030] For the purposes of the present invention, the name topoisomerase III&agr; covers human topoisomerase III&agr; in itself as well as the homologous forms corresponding in particular to mutated forms of this protein.

[0031] Preferably, the polypeptides according to the invention comprise all or part of the polypeptide sequence described in SEQ ID No. 4 or of its derivatives.

[0032] The present invention also includes a polypeptide characterized in that it is a fragment of the DBX1 protein, capable of interacting with topoisomerase III&agr; and comprising all or part polypeptide fragment which extends between residues 318-662 and represented in the polypeptide sequence SEQ ID No. 6 or its derivatives.

[0033] The subject of the present invention is also the use of the polypeptides according to the invention or of fragments of these polypeptides, for slowing down, inhibiting, stimulating or modulating the activity of topoisomerase III&agr;.

[0034] Indeed, it is possible to envisage regulating the function of topoisomerase III&agr; by means of the polypeptides according to the invention or of fragments thereof and in particular inhibiting or slowing down the activity of topoisomerase III&agr;. This modification of the activity of topoisomerase III&agr; is capable of leading to a slowing down of cellular growth or a blocking of the cell cycle or of inducing apoptosis.

[0035] Another subject of the present invention relates to a method for preparing the polypeptides according to the invention according to which a cell containing a nucleotide sequence encoding said polypeptides is cultured under conditions for expressing said sequence and the polypeptide produced is recovered. In this case, the part encoding said polypeptide is generally placed under the control of signals allowing its expression in a cellular host. The choice of these signals (promoters, terminators, leader sequence for secretion, and the like) may vary according to the cellular host used. Moreover, the nucleotide sequences of the invention may form part of a vector which may be autonomously replicating or integrative. More particularly, autonomously replicating vectors may be prepared using autonomously replicating sequences in the chosen host. As regards integrative vectors, these may be prepared, for example, using sequences homologous to certain regions of the genome of the host, allowing, through homologous recombination, the integration of the vector.

[0036] The subject of the present invention is also host cells transformed with a nucleic acid comprising a nucleotide sequence according to the invention. The cellular hosts which can be used for the production of the polypeptides of the invention by the recombinant route are both eukaryotic and prokaryotic hosts. Among the suitable eukaryotic hosts, animal cells, yeasts or fungi may be mentioned. In particular, as regards yeasts, yeasts of the genus Saccharomyces, Kluyveromyces, Pichia, Schwanniomyces or Hansenula may be mentioned. As regards animal cells, the insect cells Sf9, the cells COS, CHO, C127, of human neuroblastomas, and the like, may be mentioned. Among the fungi, Aspergillus ssp. or Trichoderma spp. may be more particularly mentioned. As prokaryotic hosts, the use of the following bacteria E. coli, Bacillus or Streptomyces is preferred.

[0037] According to a preferred mode, the host cells are advantageously represented by recombinant yeast strains.

[0038] Preferably, the host cells comprise at least one sequence or one fragment of a sequence chosen from the nucleotide sequences SEQ ID No. 3 or SEQ ID No. 5, for the production of the polypeptides according to the invention.

[0039] The nucleotide sequences according to the invention may be incorporated into viral or nonviral vectors, allowing their administration in vitro, in vivo or ex vivo.

[0040] Another subject of the invention relates, in addition, to any vector comprising a nucleotide sequence encoding a polypeptide according to the invention. The vector of the invention may be for example a plasmid, a cosmid or any DNA not encapsulated by a virus, a phage, an artificial chromosome, a recombinant virus, and the like. It is preferably a plasmid or a recombinant virus.

[0041] As viral vectors in accordance with the invention, there may be most particularly mentioned vectors of the adenovirus, retrovirus, adeno-associated virus, herpesvirus or vaccina virus type. The subject of the present application is also defective recombinant viruses comprising a heterologous nucleic sequence encoding a polypeptide according to the invention.

[0042] Another subject of the invention consists in polyclonal or monoclonal antibodies or antibody fragments directed against a polypeptide as defined above. Such antibodies may be generated by methods known to persons skilled in the art. In particular, these antibodies may be prepared by immunizing an animal against a polypeptide whose sequence is chosen from the sequences SEQ ID No. 4 or SEQ ID No. 6 or any fragment or derivative thereof, and then collecting blood and isolating antibodies. These antibodies may also be generated by preparing hybridomas according to techniques known to persons skilled in the art. The antibodies or antibody fragments according to the invention may in particular be used to inhibit and/or reveal the interaction between topoisomerase III&agr; and the polypeptides as defined above.

[0043] Another subject of the present invention relates to a method for identifying compounds capable of binding to the polypeptides according to the invention. The identification and/or isolation of these compounds or ligands may be carried out according to the following steps:

[0044] a molecule or a mixture containing various molecules, optionally unidentified, is brought into contact with a polypeptide of the invention under conditions allowing the interaction between said polypeptide and said molecule in the case where the latter might possess affinity for said polypeptide, and,

[0045] the molecules bound to said polypeptide of the invention are detected and/or isolated.

[0046] According to a particular mode, such a method makes it possible to identify molecules capable of blocking the helicase type activity, in particular the DNA helicase activity of the DBX1 protein or of the polypeptides according to the invention and thus modulate the processes of division, replication or transcription of DNA. These molecules are capable of possessing a cytotoxic type antitumor activity because of the disruption of these basic processes at the level of the DNA.

[0047] In this regard, another subject of the invention relates to compounds or ligands capable of binding to the polypeptides according to the invention and capable of being obtained according to the method defined above.

[0048] Another subject of the invention relates to the use of a compound or of a ligand identified and/or obtained according to the method described above as a medicament. Such compounds are indeed capable of being used for the prevention, improvement or treatment of certain conditions involving a cell cycle dysfunction.

[0049] The subject of the invention is also any pharmaceutical composition comprising, as active ingredient, at least one ligand obtained according to the method described above.

[0050] Another subject of the present invention relates to a method of identifying compounds capable of modulating or of completely or partially inhibiting the interaction between topoisomerase III&agr; and the polypeptides according to the invention or the DBX1 protein.

[0051] The identification and/or isolation of modulators or ligands capable of modulating or of completely or partially inhibiting the interaction between topoisomerase III&agr; and the polypeptides according to the invention or the DBX1 protein may be carried out according to the following steps:

[0052] the binding of topoisomerase III&agr; or of a fragment thereof to a polypeptide according to the invention is carried out;

[0053] a compound to be tested for its capacity to inhibit the binding between topoisomerase III&agr; and the polypeptides according to the invention is added;

[0054] it is determined whether topoisomerase III&agr; or the polypeptides according to the invention are displaced from the binding or prevented from binding;

[0055] the compounds which prevent or which impede the binding between topoisomerase III&agr; and the polypeptides according to the invention are detected and/or isolated.

[0056] In a particular mode, this method of the invention is suited to the identification and/or isolation of agonists and antagonists of the interaction between topoisomerase III&agr; and the polypeptides of the invention. Still according to a particular mode, the invention provides a method for identifying molecules capable of blocking the interaction between human Topoisomerase III&agr; and the helicase DBX1.

[0057] Such a method makes it possible to identify molecules capable of blocking the reverse gyrase type activity of these two proteins and thus modulate the processes of division, replication, transcription, translation, splicing, repair or recombination of DNA. These molecules are capable of possessing a cytotoxic type antitumor activity because of the disruption of these basic processes at the level of the DNA.

[0058] In this regard, another subject of the invention relates to compounds or ligands capable of interfering at the level of the interaction between topoisomerase III&agr; and the polypeptides according to the invention or the DBX1 protein and which are capable of being obtained according to the method defined above.

[0059] The invention also relates to the use of a compound or of a ligand identified and/or obtained according to the method described above as a medicament. Such compounds are indeed capable of being used for the prevention, improvement or treatment of certain conditions involving a cell cycle dysfunction.

[0060] The subject of the invention is also any pharmaceutical composition comprising, as active ingredient, at least one ligand obtained according to the method described above.

[0061] Other advantages of the present invention will emerge from reading the examples which follow and which should be considered as illustrative and nonlimiting.

LEGEND TO THE FIGURES

[0062] FIG. 1: This figure represents the beginning and the end of the sequence SEQ ID No. 1 so as to present the introduction of the BamHI and SalI sites in 5′ and 3′ of the topoisomerase III&agr; coding sequence and the position of the XhoI and HindIII sites.

MATERIALS AND METHODS

[0063] 1) General Molecular Biology Techniques

[0064] The methods conventionally used in molecular biology such as preparative extractions of plasmid DNA, centrifugation of plasmid DNA in cesium chloride gradient, electrophoresis on agarose or acrylamide gels, purification of DNA fragments by electroelution, phenol or phenol-chloroform extractions of proteins, precipitation of DNA in saline medium with ethanol or isopropanol, transformation in Escherichia coli, and the like, are well known to persons skilled in the art and are abundantly described in the literature [Maniatis T. et al., “Molecular Cloning, a Laboratory Manual”, Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y., 1982; Ausubel F. M. et al. (eds), “Current Protocols in Molecular Biology”, John Wiley & Sons, New York, 1987].

[0065] For the ligations, the DNA fragments may be separated according to their size by electrophoresis on agarose or acrylamide gels, extracted with phenol or with a phenol/chloroform mixture, precipitated with ethanol and then incubated in the presence of T4 phage DNA ligase (Biolabs) according to the supplier's recommendations.

[0066] The filling of the protruding 5′ ends may be carried out with the Klenow fragment of E. coli DNA Polymerase I (Biolabs) according to the supplier's specifications. The destruction of the protruding 3′ ends is carried out in the presence of the T4 phage DNA Polymerase (Biolabs) used according to the manufacturer's recommendations. The destruction of the protruding 5′ ends is carried out by a controlled treatment with S1 nuclease.

[0067] Mutagenesis directed in vitro by synthetic oligodeoxynucleotides may be carried out according to the method developed by Taylor et al. [Nucleic Acids Res. 13 (1985) 8749-8764] using the kit distributed by Amersham.

[0068] Enzymatic amplification of DNA fragments by the so-called PCR technique [Polymerase-catalyzed Chain Reaction, Saiki R. K. et al., Science 230 (1985) 1350-1354; Mullis K. B. and Faloona F. A., Meth. Enzym. 155 (1987) 335-350] may be carried out using a “DNA thermal cycler” (Perkin Elmer Cetus) according to the manufacturer's specifications.

[0069] The verification of the nucleotide sequences may be carried out by the method developed by Sanger et al. [Proc. Natl. Acad. Sci. USA, 74 (1977) 5463-5467] using the kit distributed by Amersham.

[0070] 2) The Yeast Strains Used Are:

[0071] The strain yCM17 of the genus S. cerevisiae (MATa, ura3-52, his3-200, ade2-101, lys2-801, trp1-901, leu2-3,112, canr, gal4-542, gal80-538, URA3::GAL1/10-lacZ-URA3) was used as tool for screening the library for fusion of Hela cells by the two-hybrid system.

[0072] The strain L40 of the genus S. cerevisiae (MATa, his3D200, trp1-901, leu2-3,112, ade2, LYS2::(lexAop)4-HIS3, URA3:(lexAop)8-LacZ, GAL4) was used to verify the protein-protein interactions when one of the protein partners is fused with the LexA protein. The latter is capable of recognizing the LexA response element controlling the expression of the LacZ and His3 reporter genes.

[0073] They were cultured on the following culture media:

[0074] Complete YPD medium: yeast extract (10 g/l) (Difco), bactopeptone (20 g/l) (Difco), glucose (20 g/l) (Merck). This medium was made solid by addition of 20 g/l of agar (Difco).

[0075] Minimum YNB medium: Yeast Nitrogen Base (without amino acids) (6.7 g/l) (Difco), glucose (20 g/l) (Merck). This medium may be made solid by addition of 20 g/l of agar (Difco). This medium is supplemented with amino acids or nitrogen bases (50 mg/ml) which are necessary to bring about the growth of auxotrophic yeasts. Ampicillin (100 &mgr;g/ml) is added to the medium so as to avoid bacterial contaminations.

[0076] 3) The Bacterial Strains Used Are:

[0077] The Escherichia coli TG1 strain of the supE, hsd&Dgr;5, thi, &Dgr;(lac-proAB), F′[tra D36 pro A+B+ lacIq lacZ&Dgr;M15] genotype was used for the construction of the plasmids pLex-TopoIII&agr; and pGBT-TopoIII&agr;.

[0078] The Escherichia coli HB101 strain of the supE44, ara14, galK2, lacY1, &agr;(gpt-proA)62, rpsL20(Strr), xy1-5, recA13, &Dgr;(mcrC-mrr), HsdS−(r−m−) gentotype was used as means for amplifying and isolating plasmids obtained from the Hela cell cDNA library.

[0079] The TG1 strain was cultured on LB medium: NaCl (5 g/l) (Difco), bactotryptone (10 g/l) (Difco), yeast extract (5 g/l) (Difco). This medium may be made solid by adding 20 g/l of agar (Difco). Ampicillin was used at 100 &mgr;g/l for the selection of bacteria which have received plasmids carrying, as marker, the gene for resistance to this antibiotic.

[0080] The HB101 strain was cultured on M9 medium: Na2HPO4 (7 g/l) (Sigma), KH2PO4 (3 g/l) (Sigma), NH4Cl (1 g/l) (Sigma), NaCl (0.5 g/l) (Sigma), glucose (20 g/l) (Sigma), MgSO4 (1 mm) (Sigma), thiamine (0.001%). This medium is made solid by adding 15 g/l of agar (Difco).

[0081] Leucine (50 mg/l) (Sigma) and proline (50 mg/l) (Sigma) are added to the M9 medium to allow growth of the HB101 strain. During the selection of plasmids obtained from the Hela cell two-hybrid cDNA library, leucine was not added to the medium because the plasmids carry a Leu2 selection marker.

[0082] 3) The Plasmids Used Are:

[0083] Vector pGBT9 (+2): this plasmid is derived from the plasmid pGBT9 (Clontech). It exhibits a reading frame shift of +2, upstream of the EcoR1 site, in the zone corresponding to the multiple cloning site. The difference in sequence between pGBT9 (+2) and pGBT9, upstream of the EcoRI site (underlined), is represented in bold below: 1 SEQ ID No. 7 pGBT9 (+2): TCG CCG GAA TTG AAT TCC CGG GGA TCC GT SEQ ID No. 8 pGBT9: TCG CCG GAA TTC CCG GGG ATC CGT

[0084] The vector PGBT9 (+2) is a shuttle plasmid of 5.4 kb which possesses a bacterial and yeast replication origin allowing it to replicate in a high copy number in these two microorganisms. This plasmid contains a multiple cloning site situated downstream of the sequence encoding the DNA-binding domain of GAL4 and upstream of a terminator to form a fusion protein. It also contains the S. cerevisiae TRP1 gene which makes it possible to complement yeasts of the trp1 genotype so as to select them on a minimum medium not containing tryptophan. This vector carries the gene for resistance to ampicillin which makes it possible to select the bacteria on a medium containing ampicillin.

[0085] pGBT-HaRasVal12: plasmid derived from pGBT9 and comprising the sequence encoding the HaRas protein mutated at position Val12 known to interact with the mammalian Raf protein. This plasmid was used to test the specificity of interaction of the protein according to the invention with human topoisomerase III&agr;.

[0086] PGBT-Fe65: plasmid derived from pGBT9 and comprising a portion of the sequence encoding the Fe65 protein known to interact with the cytoplamic region of APP (Amyloid Peptide Precursor). This plasmid was used as a control to verify the specificity of interaction of the protein according to the invention with human topoisomerase III&agr;

[0087] The vector pGAD GH: provided by Clontech and which allows the expression in yeast of proteins from the fusion between the transactivating domain of GAL4 and a protein encoded by the cDNA obtained from a Hela cell library, inserted at the level of the EcoRI and XhoI sites.

[0088] The vector pLex9 (pBTM116) (Bartel et al D. A. Hartley Ed, Oxford University press page 153) of 5 kb homologous to pGBT10 which contains a multiple cloning site downstream of the sequence encoding the bacterial LexA repressor and upstream of a terminator to form a fusion protein.

[0089] 4) The Synthetic Oligonucleotides Used Are: 2 SEQ ID No. 9 oligonucleotide 124 CGAGGTCTGAGGATGATCTT SEQ ID No. 10 oligonucleotide 125 CTGAGAAAGTGGCGTTCTCT

[0090] This pair of oligonucleotides served to amplify by PCR, starting with a Hela cell cDNA library, a fragment corresponding to the sequence encoding human topoisomerase III&agr;. 3 SEQ ID No. 11 oligonucleotide Top3Xho1 AAGTTACTCGAGATGGCCCTCCGAGG SEQ ID No. 12: oligonucleotide Top3Hind3 ACGAGCAAGCTTCTCTACCCTACCCTG

[0091] The pair of oligonucleotides Top3Xho1 and Top3Hind3 made it possible to introduce the XhoI and HindIII sites respectively during a second PCR step on the fragment corresponding to topoisomeraseIII&agr; previously amplified by means of oligonucleotides 124 and 125. 4 SEQ ID No. 13: oligonucleotide PCS1 AATTGCGAATTCTCGAGCCCGGGGATCCGTCGACTGCA SEQ ID No. 14: oligonucleotide PCS2 GTCGCAGGATCCCCGGGCTCGAGAATTCGC

[0092] The pair of oligonucleotides PCS1 and PCS2 made it possible to introduce to the plasmid pLex9 a XhoI site in phase with the human topoisomeraseIII&agr; coding sequence. The insert comprising the gene encoding topoisomerase III&agr; was therefore recloned into this vector between the sites XhoI in 5′ and Sal I in 3′.

[0093] SEQ ID No. 15 oligonucleotide GAL4TA

[0094] CCACTACAATGGATGATG

[0095] This oligonucleotide was used to sequence the inserts contained in the plasmids of the Hela cell two-hybrid cDNA library.

[0096] The oligonucleotides are synthesized on the Applied System ABI 394-08 apparatus. They are detached from the synthesis template with ammonia and precipitated twice with 10 volumes of n-butanol and then taken up in water. The quantification is carried out by measuring the optical density (one OD unit corresponds to 30 &mgr;g/ml).

[0097] 5) Transformation of the TG1 Bacteria

[0098] The entire ligation volume (10 &mgr;l) is used to transform the TG1 bacteria made competent by the Chung et al. method (PNAS, 1988 86; 2172-2175).

[0099] The TG1 bacteria are cultured in a liquid LB medium for a few hours in a shaking incubator at 37° C., until an OD of 0.6 to 600 nm is obtained. The medium is then centrifuged at 6 000 rpm for 10 min. The bacteria are made competent by taking up the bacterial pellet in a volume of TSB (LB medium+100 g/l of PEG 4000, 5% of DMSO, 10 mM MgCl2, 10 mM MgSO4) corresponding to {fraction (1/10)} of the volume of the initial culture medium. After incubation at 4° C. for 30 to 60 minutes, 200 &mgr;l of bacteria are brought into contact with the ligation products for 15 minutes on ice. After addition of 200 &mgr;l of LB, the bacteria are incubated for 30 min at 37° C. and then plated on an LB+ampicillin medium.

[0100] 6) Preparation of Plasmids from the Hela Cell Two-hybrid cDNA Library (Clontech®)

[0101] The Hela cell two-hybrid cDNA library is sold in the form of bacteria. The latter contain a plasmid pGAD GH containing an insert corresponding to a Hela cell cDNA. The cDNAs of this library are constituted by means of an oligodT primer. These cDNAs are cloned in an orientated manner into the vector pGAD GH at the level of the EcoRI and XhoI. 2.1 sites)

[0102] The plasmid DNA of the brain cDNA library was extracted according to the Clontech® protocol. To preserve the representativeness of the library which consists of 1.2×106 independent plasmids, the batch of plasmid DNA was prepared from a number of isolated bacterial colonies corresponding to a little over twice the representativeness of the library, that is 4×106 colonies.

[0103] After verification of the titre of the library, 2 &mgr;l of bacteria of the Hela cell two-hybrid cDNA library, previously placed in 8 ml of LB, are plated on a solid medium (16 dishes/770 cm2 in LB+ampicillin medium). The colonies which appear are taken up for each of the dishes in 30 ml of liquid LB+ampicillin. The suspensions obtained are incubated at 37° C. for 3 hours. The DNA is then extracted from these strains by the technique for extracting plasmid DNA in a large quantity. The DNA concentration is determined at 260 nm.

[0104] 7) Transformation of Yeast

[0105] The yeasts previously cultured in 100 ml of liquid medium are harvested by centrifugation (3 000 rpm, 3 minutes). The pellet is washed twice by centrifuging with 1 ml of sterile water. The yeasts are then taken up in 1 ml of transformation solution I (0.1 M LiAc, 10 mM Tris-HCl pH 7.5, 1 mM EDTA) and then centrifuged (3 000 rpm, 3 minutes). The pellet is taken up in 1 ml of transformation solution I. 50 &mgr;l of this yeast suspension are brought into contact with 50 &mgr;g of salmon sperm DNA and 1 to 5 &mgr;g of plasmid DNA and 300 &mgr;l of a transformation solution II (0.1 M LiAc, 10 mM Tris-HCl pH 7.5, 1 mM EDTA in 40% PEG4000). This mixture is incubated at 28° C. for 30 minutes. After application of a heat shock (40° C., 15 minutes), the cells are harvested by centrifugation (15 000 rpm for 1 min). This pellet is taken up in 200 &mgr;l of water and then plated on a minimum agar medium not containing amino acids corresponding to the resistance markers carried by the plasmids transforming the yeasts. The yeasts are incubated for 72 hours at 28° C.

[0106] 8) Transformation of Yeast with the Hela Cell Two-hybrid cDNA Library

[0107] The yeast used was transformed beforehand with the plasmid pLexTopoIII&agr;. It is cultured in minimum YNB+His+Lys+Ad+Leu medium (250 ml), at 28° C., with stirring until a density of 107 cells/ml is obtained. The cells are harvested by centrifugation (3 000 rpm, 10 minutes) and then taken up in 250 ml of water. After another centrifugation, the cellular pellet is taken up in 100 ml of water and again centrifuged. The pellet is then taken up in 10 ml of transformation solution I and incubated for 1 hour at 28° C. with stirring. After centrifugation, the cells are again taken up in 2.5 ml of transformation solution I, 100 &mgr;l of the Hela cell cDNA library and 20 ml of transformation solution II, and then incubated for 1 hour at 28° C. with stirring. A heat shock is applied to this transformation mixture at 42° C. for 20 minutes. The cells are then centrifuged and the cellular pellet harvested is washed with 10 ml of sterile water. This operation is repeated twice and then the pellet is taken up in 2.5 ml of PBS. At this stage, the PEG which is toxic to the cells is removed. 2.4 ml of this suspension are used to inoculate 250 ml of minimum medium containing the amino acids His, Lys, Ad and cultured overnight in a shaker at 28° C. The remaining 100 &mgr;l of this suspension serve to determine the transformation efficiency by dilution on solid minimum medium in the presence of His, Lys and Ad. The overnight culture is then centrifuged (3 000 rpm for 5 min) and washed twice with sterile water. The pellet is then taken up in 2.5 ml of water. One aliquot of 2.4 ml of this mixture is brought to 10 ml in sterile water, this solution is used to inoculate 10 dishes of 435 cm2 containing 200 ml of YNB+Lys+Ad medium and incubated for 3 days. The remaining 100 &mgr;l are used to determine the level of amplification of the number of colonies during an overnight culture.

[0108] 9) Extraction of Nucleic Acids from Yeasts

[0109] The value of an average loop of a yeast clone is placed in 200 &mgr;l of a TELT solution (2% Triton X100, 1% SDS, 100 mM NaCl, 10 mM Tris pH 8, 1 mM EDTA), in the presence of 3 g of glass beads 450 &mgr;m in diameter and 200 &mgr;l of phenol/chloroform. This mixture is stirred for 15 minutes and then centrifuged for 2 minutes at 14 000 rpm. The supernatant is collected without removing the protein cake and the DNA contained in this phase is precipitated with 2.5 volumes of absolute ethanol. After centrifuging for 2 minutes at 14 000 rpm, the DNA pellet is dried and taken up in 20 &mgr;l of TE-RNAse. 3 &mgr;l of this DNA solution previously dialyzed against water, which corresponds to a mixture of nucleic acids, serves directly to transform HB101 bacteria. Only the plasmid DNA is capable of replicating in the bacteria and may be analyzed by the technique for preparing plasmid DNA from bacteria in a small quantity.

[0110] 10) Test for &bgr;-galactosidase Activity

[0111] A nitrocellulose sheet is deposited beforehand on the Petri dish containing the individualized yeast clones. This sheet is then immersed in liquid nitrogen for 30 seconds so as to break the yeasts and thus release the &bgr;-galactosidase activity. After thawing, the nitrocellulose sheet is deposited, colonies at the top, in another Petri dish containing a Whatman 3M paper impregnated beforehand with 1.5 ml of PBS solution (60 mM Na2HPO4, 40 mM NaH2PO4, 10 mM KCl, 1 mM MgSO4, pH 7) and 10 to 30 &mgr;l of X-Gal (5-bromo-4-chloro-3-indoyl-&bgr;-D-galactoside) containing 50 mg/ml of N,N-dimethylformamide. The dish is then incubated at 37° C.

EXAMPLE 1

Construction of a Vector Allowing the Expression of a Protein from the Fusion Between Human Topoisomerase III&agr; and a DNA-binding Protein

[0112] The screening of a cDNA library using the. two-hybrid system requires beforehand that the human topoisomerase III&agr; is fused with a protein capable of binding to the promoters controlling the expression of reporter genes such as the LexA protein of the bacterial repressor or the DNA-binding domain (DB) of GAL4. The expression of the fusion proteins is carried out by means of the vector pLex9 in the case of a fusion with the LexA protein or by means of the vector pGBT9 (+2) for a fusion with the DB of GAL4 (cf. Materials and Methods). The sequence encoding the human topoisomerase III&agr; presented in SEQ ID No. 1 was introduced into these two types of vector in the same reading frame as the sequence corresponding to the LexA protein or to the DB of Gal4.

[0113] The DNA fragment corresponding to the sequence encoding human topoisomerase III&agr; was amplified by PCR from a Hela cell cDNA library (Clontech) by means of oligonucleotides 124 and 125. A second PCR amplification step was performed on the DNA fragment so as to introduce at the two ends the XhoI and HindIII sites by means of the pair of oligonucleotides Top3Xho1 and Top3Hind3. The new DNA fragment obtained, digested with XhoI and HindIII, was introduced at the corresponding sites into the vector pBlueBacHis2A (Invitrogen) which gives the possibility of using new BamHI and SalI restriction sites (represented in bold with the XhoI and HindIII sites in FIG. 1) so as to produce the final constructs.

[0114] The plasmid pLex-TopoIII&agr; was constructed by inserting the XhoI-SalI fragment, of the preceding plasmid, corresponding to human topoisomeraseIII&agr;, into the plasmid pLex9 modified beforehand by insertion of the oligonucleotides PCS1 and PCS2 at the EcoRI-PstI1 sites. This plasmid was used to screen a Hela cell two-hybrid cDNA library with the aim of identifying. proteins interacting with human topoisomerase III&agr;.

[0115] The plasmid pGBT-TopoIII&agr; was constructed by inserting, at the BamHI and SalI sites of the plasmid pGBT9 (+2), a fragment obtained by partial digestion with BamHI and total digestion with SalI and corresponding to human topoisomerase III&agr;. This plasmid was used to validate, by the two-hybrid technique, the specificity of interaction of the proteins selected during the screening with human topoisomerase III&agr;.

[0116] The constructs were verified by sequencing the DNA. This verification made it possible to show that the fragments of human topoisomerase III&agr; did not exhibit mutations generated during the PCR reaction and that they were fused in the same open reading frame as that of the fragments corresponding to the LexA protein or to the DB of GAL4.

EXAMPLE 2

Screening by the Two-hybrid Technique of a HeLa Cell cDNA Library

[0117] The screening of a fusion library makes it possible to identify clones producing proteins fused with the transactivating domain of GAL4, which can interact with topoisomerase III&agr;. This interaction makes it possible to reconstitute a transactivator which will then be capable of inducing the expression of the reporter genes His3 and LacZ in the L40 strain used.

[0118] To carry out this screening, a fusion library produced from cDNA obtained from Hela cells was chosen.

Transformation of Yeast with the Hela Cell Two-hybrid cDNA Library and Selection of the Positive Clones

[0119] During the screening, it is necessary to preserve the probability that each independent plasmid of the fusion library is present in at least one yeast at the same time as the plasmid pLex-TopoIII&agr;. To preserve this probability, it is important to have a good efficiency of transformation of the yeast; for this purpose, a yeast transformation protocol giving an efficiency of 105 transformed cells per &mgr;g of DNA was chosen. Furthermore, as the cotransformation of yeast with two different plasmids reduces this efficiency, an L40 yeast transformed beforehand with the plasmid pLex-TopoIII&agr; was used. This strain containing pLex-TopoIII&agr;, of the phenotype His-, Lys-, Leu-, was transformed with 100 &mgr;g of plasmid DNA the two-hybrid library. This quantity of DNA made it possible to obtain after estimation (see Materials and Methods) 6×106 transformed cells, which corresponds to the number of independent plasmids which the library constitutes. It is thus possible to estimate that less than all of the plasmids of the library served to transform the yeasts. The selection of the transformed cells, capable of reconstituting a functional GAL4 transactivator, was performed on an YNB+Lys+Ad medium.

[0120] At the end of this selection, about 500 clones of the His+ phenotype were obtained. A test for &bgr;-galactosidase activity was performed on these transformants so as to determine the number of clones expressing the other reporter gene, LacZ. Of the 500 clones obtained, sixty-three exhibited the double phenotype His+ and &bgr;Gal+, thus showing that they express proteins which can interact with human topoisomerase III&agr;.

EXAMPLE 3

Isolation of the Plasmids from the Yeast Clones Selected

[0121] To identify the proteins which interact with human topoisomerase III&agr;, the plasmids obtained from the two-hybrid library of the yeasts selected during the two-hybrid screening were extracted. The DNA of the yeast strains of the phenotype His+ and &bgr;Gal+ is used to transform the E. coli HB101 strain.

[0122] The plasmid DNAs of the bacterial colonies obtained after transformation with yeast DNA extracts were analyzed by digesting with restriction enzymes and separating the DNA fragments on agarose gel. Two different restriction profiles were obtained out of 15 yeast clones analyzed. One of these profiles was highly represented. These results show that at least 2 different plasmids were isolated during this screening, the DNA fragment obtained from the cDNA library contained in the most highly represented plasmid was selected for the remainder of the study.

EXAMPLE 4

Determination of the Sequence of the Insert Contained in the Plasmid Selected

[0123] The sequencing was carried out on the most highly represented plasmid. The sequencing is carried out using the oligonucleotide GAL4TA complementary to the region close to the site of insertion of the Hela cell cDNA library, at 52 base pairs from the EcoRI site.

[0124] Comparison of the sequence obtained with the sequences contained in the GenBank and EMBL (European Molecular Biology Lab) databanks has shown that the sequence of the cDNA present in the plasmid selected exhibits 98.2% at the nucleic level with the human gene encoding the Dead Box X isoform protein (DBX1) also called helicase like protein 2 (DDX14) having the accession number AF000982 and U50553 respectively. Comparison of the sequence of the cDNA present in the plasmid selected also shows 98.1% identity with the DDX14 protein.

[0125] The nucleotide and polypeptide sequence of DBX1 is presented in the sequence SEQ ID No. 5. The sequence of the gene cloned by two hybrids starts at nucleotide 952 relative to the putative initiation codon, that is at the 318th amino acid and contains a sequence homologous to the sequence encoding the C-terminal part of the DBX1 protein including the stop codon.

[0126] This result shows that the domain for interaction of the protein or polypeptide partners of human topoisomerase III&agr; is contained in the second C-terminal half of said partners.

[0127] Differences were noted relative to the published DBX1 sequence, in particular the AGT codon (at position 1768 relative to the initiation codon, that is at position 2624 on the sequence SEQ ID No. 5) encoding serine 590 is absent in the cloned fragment.

[0128] Likewise, the presence of a C residue in place of a T at position 2068 of the ATG was noted.

[0129] The sequence of the cloned fragment is represented in SEQ ID No. 3.

EXAMPLE 5

Analysis of the Specificity of Interaction Between Topoisomerase III&agr; and the Polypeptides of the Invention

[0130] The specificity of interaction between human topoisomerase III&agr; and the polypeptide according to the invention was confirmed in a two-hybrid interaction test using the plasmid pGBT-TopoIII&agr; in place of the plasmid pLex-TopoIII&agr;. The plasmid pGBT-TopoIII&agr; comprises the gene encoding human topoisomerase III&agr; fused with the DNA-binding domain of GAL4.

[0131] The strain yCM17 was transformed with the plasmid isolated during the screening of the two-hybrid library and with the plasmid pGBT-TopoIII&agr;. Controls for specificity of interaction were also performed by transforming this strain with the control plasmids pGBT-HaRasVal12 or pGBT-Fe65, in place of the plasmid pGBT-TopoIII&agr;. A test of &bgr;-Gal activity on the cells transformed with the various plasmids was performed to demonstrate the protein-protein interactions.

[0132] The results of the test showed that only the yeasts transformed with the plasmid isolated during the screening of the two-hybrid library and with the plasmid pGBT-TopoIII&agr; exhibited a &bgr;-Gal+ activity, thus showing interaction between human topoisomerase III&agr; and the C-terminal region of the polypeptides according to the invention. These-results also show that this interaction is independent of the fusion protein used.

Claims

1. Nucleotide sequence encoding a polypeptide capable of interacting with topoisomerase III&agr;.

2. Nucleotide sequence according to claim 1, characterized in that it encodes a polypeptide comprising all or part of the polypeptide sequence SEQ ID No. 4 or of its derivatives.

3. Nucleotide sequence according to either of claims 1 and 2, characterized in that it comprises all or part of the nucleotide sequence SEQ ID No. 3 or of its derivatives.

4. Polypeptide, characterized in that it is capable of interacting with topoisomerase III&agr;.

5. Polypeptide according to claim 4, characterized in that it comprises all or part of the polypeptide sequence SEQ ID No. 4 or of a sequence derived therefrom.

6. Polypeptide according to claim 4, characterized in that it consists of the polypeptide sequence corresponding to residues 318-662 of the sequence SEQ ID No. 5 or of a sequence derived therefrom.

7. Use of a polypeptide or of a polypeptide fragment according to claims 4 to 6, for slowing down, inhibiting, stimulating or modulating the activity of topoisomerase III&agr;.

8. Antibody or antibody fragment directed against a polypeptide according to one of claims 4 to 6.

9. Method for detecting or identifying compounds capable of binding to a polypeptide as defined according to one of claims 4 to 6, characterized in that the following steps are carried out:

a—a molecule or a mixture containing various molecules, optionally unidentified, is brought into contact with a polypeptide as defined according to one of claims 4 to 6 under conditions allowing the interaction between said polypeptide and said molecule in the case where the latter might possess affinity for said polypeptide, and,

b—the molecules bound to said polypeptide are detected and/or isolated.

10. Method for detecting or identifying compounds capable of modulating or inhibiting the interaction between topoisomerase III-&agr; and a polypeptide as defined according to claims 4 to 6, characterized in that the following steps are carried out:

a—the binding of topoisomerase III&agr; or of a fragment thereof to said polypeptide is carried out;

b—a compound to be tested for its capacity to inhibit the binding between topoisomerase III&agr; and said polypeptide is added;

c—the displacement or inhibition of the binding of topoisomerase III&agr; to said polypeptide is determined;

d—the compounds which prevent or which impede the binding between topoisomerase IlI&agr; and said polypeptide are detected and/or isolated.

11. Ligand for a polypeptide as defined according to claims 4 to 6, capable of being obtained according to the method of claim 9.

12. Ligand capable of modulating or inhibiting the interaction between topoisomerase III&agr; and a polypeptide as defined according to claims 4 to 6, capable of being obtained according to the method of claim 10.

13. Use of a ligand according to claim 11 or 12 for the preparation of a medicament intended for the prevention, improvement or treatment of diseases involving a cell cycle dysfunction.

14. Pharmaceutical composition comprising, as active ingredient, at least ligand according to either of claims 11 and 12 or an antibody according to claim 8.

15. Composition according to claim 14, intended for modulating slowing down or inhibiting the activity of topoisomerase III&agr;.

16. Composition according to either of claims 14 and 15, intended for the prevention, improvement or treatment of diseases involving a cell cycle dysfunction.