Patents Issued in August 11, 2016
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Publication number: 20160230194Abstract: A method for the in vivo production of 1,3-butadiene from 2,4-pentadienoate is described (FIG. 1). Enzymes capable of decarboxylating 2,4-pentadienoate to 1,3-butadiene have been discovered. Recombinant expression of these newly discovered enzymes has resulted in the engineering of microorganisms capable of producing 1,3-butadiene when cultured in the presence of 2,4-pentadienoate. 1,3-butadienoate is an important monomer used in the manufacturing of rubbers and plastics. This invention will help to enable the biological production of 1,3-butadiene from renewable resources such as sugar, for example.Type: ApplicationFiled: August 13, 2014Publication date: August 11, 2016Applicant: Arizona Board of Regents on behalf of Arizona State UniversityInventors: David NIELSEN, Shawn PUGH, Rebekah MCKENNA
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Publication number: 20160230195Abstract: The invention provides non-naturally occurring microbial organisms containing 2,4-pentadienoate, butadiene, propylene, 1,3-butanediol, crotyl alcohol or 3-buten-1-ol pathways comprising at least one exogenous nucleic acid encoding a butadiene pathway enzyme expressed in a sufficient amount to produce 2,4-pentadienoate, butadiene, propylene, 1,3-butanediol, crotyl alcohol or 3-buten-1-ol. The invention additionally provides methods of using such microbial organisms to produce 2,4-pentadienoate, butadiene, propylene, 1,3-butanediol, crotyl alcohol or 3-buten-1-ol, by culturing a non-naturally occurring microbial organism containing 2,4-pentadienoate, butadiene, propylene, 1,3-butanediol, crotyl alcohol or 3-buten-1-ol pathways as described herein under conditions and for a sufficient period of time to produce 2,4-pentadienoate, butadiene, propylene, 1,3-butanediol, crotyl alcohol or 3-buten-1-ol.Type: ApplicationFiled: November 6, 2015Publication date: August 11, 2016Inventors: Robin E. OSTERHOUT, Anthony P. BURGARD, Mark J. BURK
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Publication number: 20160230196Abstract: Embodiments of the invention provide a microorganism capable of simultaneous co-fermentation of two or more sugars in a lignocellulosic hydrolysate and having tolerance against microorganism growth inhibitory substances in the lignocellulosic hydrolysate and further having butanol productivity. In addition, embodiments of the invention provide a recombinant microorganism in which a pathway converting butyryl-CoA into butanol or a pathway converting butyrate into butyryl-CoA is promoted, and butanol productivity is increased. Further, a method for producing butanol using the microorganisms is provided.Type: ApplicationFiled: February 4, 2016Publication date: August 11, 2016Inventor: Sang-Hyun LEE
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Publication number: 20160230197Abstract: The invention relates to a method, a device and a system for producing particularly a hydrogel (200) and for controlling an enzymatically catalysed formation of a covalent bond in a solution, wherein said covalent bond is formed between a first compound (20) comprising a first moiety (21) and a second compound (22) comprising a second moiety (23), wherein the first and the second moiety (21, 23) are a substrate of an enzyme wherein said enzyme catalyzes the formation of a covalent bond between the first and the second moiety (21, 23), and wherein a voltage is applied to the solution for spatially controlling said formation, wherein said voltage is adjusted such that it induces electrolysis of said solution.Type: ApplicationFiled: September 29, 2014Publication date: August 11, 2016Applicants: UNIVERSITAT ZURICH, ETH ZURICHInventors: Vincent MILLERET, Benjamin R. SIMONA, Janos VOROS, Martin EHRBAR
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Publication number: 20160230198Abstract: Microorganisms and methods are provided for biological synthesis of methylmalonic acid and derivatives thereof. Engineered microorganisms such as bacteria, yeast, and fungi are configured to produce or overproduce methylmalonic acid and/or derivatives thereof. Methods involve the use of such engineered microorganisms to produce methylmalonic acid and/or derivatives thereof from carbon sources. Methods may include production in a fermenter and optional purification of the product.Type: ApplicationFiled: February 9, 2016Publication date: August 11, 2016Applicant: GeneSys Consulting, LLCInventor: Goutham N. Vemuri
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Publication number: 20160230199Abstract: A method for lowering saturated fatty acid content, the method comprising concentrating polyunsaturated fatty acid using a lipase having low reactivity for the polyunsaturated fatty acid to react with a glyceride containing a polyunsaturated fatty acid; wherein the lipase reaction is performed at a temperature of not more than 25° C.Type: ApplicationFiled: April 15, 2016Publication date: August 11, 2016Inventors: Hideo IKEMOTO, Nobushige DOISAKI, Yasuo UMEHARA
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Publication number: 20160230200Abstract: Recombinant microbial cells and methods for producing 5HTP, melatonin and related compounds using such cells are described. More specifically, the recombinant microbial cell may comprise exogenous genes encoding one or more of an L-tryptophan hydroxylase, a 5-hydroxy-L-tryptophan decarboxylyase, a serotonin acetyltransferase, an acetylserotonin O-methyltransferase; and means for providing tetrahydrobiopterin (THB), and can be further genetically modified to enrich one or more of tryptophan, S-adenosyl-L-methinonine and acetyl coenzyme A. Related sequences and vectors for use in preparing such recombinant microbial cells are also described.Type: ApplicationFiled: September 5, 2014Publication date: August 11, 2016Inventors: JIANGFENG ZHU, NIELS BJERG JENSEN, XIAO CHEN, JOCHEN FÖRSTER, IRINA BORODINA
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Publication number: 20160230201Abstract: A novel UDP-Gal regeneration process and its combined use with a galactosyltransferase to add galactose to a suitable acceptor substrate. Also described herein are synthetic methods for generating Globo-series oligosaccharides in large scale, wherein the methods may involve the combination of a glycosyltransferase reaction and a nucleotide sugar regeneration process.Type: ApplicationFiled: January 21, 2016Publication date: August 11, 2016Inventors: Chi-Huey WONG, Tsung-I TSAI, Chung-Yi WU
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Publication number: 20160230202Abstract: A process for generating a synthetic engineered recombinant protein has been performed by providing an original protein design and the necessary probabilistic priors for random in silico assembly. Once the in silico synthetic protein is assayed using mathematic modeling, the proteins are then reverse translated into DNA. The DNA fragment, modifying the original DNA to obtain a first DNA fragment, wherein the modifying step comprising adding an antigen optimization sequence to the original DNA fragment, purifying the first DNA fragment, performing a DNA self-assembly or a ligation, adding an amplification linker to obtain a second DNA fragment, purifying the second DNA fragment, transferring the second DNA fragment into an expression vector, expressing the second DNA fragment into a synthetic engineered recombinant protein, as well as purifying the synthetic engineered recombinant protein.Type: ApplicationFiled: March 11, 2015Publication date: August 11, 2016Inventor: Eric William Olle
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Publication number: 20160230203Abstract: A portable fluidic platform for rapid and flexible end-to-end production of recombinant protein biologics includes a bioreactor system hosting stable and robust cell-free translation systems that is fluidically integrated with modular protein separation functionalities (e.g., size exclusion, ion exchange or affinity chromatography systems) for purification of the cell-free expressed product and which are configurable for process-specific isolation of different proteins, as well as for formulation. The bioreactor utilizes lysates from engineered eukaryotic (e.g., yeast) or prokaryotic (e.g., bacterial) strains that contain factors for protein folding and posttranslational modifications. Combination of various purification modules on the same fluidic platform allows flexibility of re-routing for purification of different proteins depending on specific target requirements.Type: ApplicationFiled: January 29, 2016Publication date: August 11, 2016Applicant: Leidos, Inc.Inventors: John Dresios, Richard Holmes Griffey, Challise J. Sullivan, Erik D. Pendleton, Henri M. Sasmor, William L. Hicks, Eric M. Amendt
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Publication number: 20160230204Abstract: Improved methods for large scale production of proteins and/or polypeptides in cell culture is provided. In accordance with the present invention, the method provides for culturing cells that have metabolically shifted. The use of such a method or system allows high levels of protein or polypeptide production and reduces accumulation of unwanted metabolic waste such as lactate. Proteins and polypeptides expressed in accordance with the present invention may be advantageously used in the preparation of pharmaceutical, immunogenic, or other commercial biologic compositions, such as antibodies.Type: ApplicationFiled: April 15, 2016Publication date: August 11, 2016Inventors: Shawn Lawrence, Michelle LaFond, Ann Kim, Amy S. Johnson, Brandon Veres, Mark Czeterko, Kristen Whalen
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Publication number: 20160230205Abstract: The present disclosure provides activated formylglycine-generating enzymes (FGE), methods of producing activated FGE, and their use in methods of producing a protein comprising a formylglycine (FGly) residue. The methods of producing activated FGE, as well as methods of use of activated FGE in producing FGly-containing proteins, include both cell-based and cell-free methods. Compositions and kits that find use, e.g., in practicing the methods of the present disclosure are also provided.Type: ApplicationFiled: December 18, 2015Publication date: August 11, 2016Inventors: David Rabuka, Gregory W. deHart, Patrick Holder, Jeanne Baker
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Publication number: 20160230206Abstract: A sensor that measures microbial activity as a surrogate value for the biologically active content of soil, aquatic sediments, or groundwater. An anode, such as a graphite anode that can support a biofilm, is connected by way of a resistor to a cathode. The anode is in contact with either soil, sediment, or immersed in the groundwater of a subsurface monitoring well. The biofilm generates electrons as a consequence of chemical interactions with materials such as acetate dissolved in the soil or sediment waters or groundwater. The cathode is located in soil or water adjacent to the ground, which can be aerobic, so that a reaction that consumes electrons occurs at the cathode. The current flowing through the resistor is a measure of the biological activity at the anode, which correlates with the flux of fuel such as acetate to the anode.Type: ApplicationFiled: April 18, 2016Publication date: August 11, 2016Inventors: Derek R. Lovley, Kelly Nevin
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Publication number: 20160230207Abstract: The present invention relates to a method for characterizing the antibiotic resistance of a microorganism, the method comprising the steps of (a) providing a reference mass spectrum of an antimicrobial compound, its enzymatic modification product, its molecular target, or of a substrate compound of a its modifying enzyme; (b) exposing a microorganism, a cell lysate thereof, or a growth medium supernatant thereof, to the antimicrobial compound or the substrate compound in aqueous liquid to thereby provide an exposed sample; (c) acquiring a mass spectrum of the exposed sample; (d) comparing the mass spectrum acquired in step c) with the reference mass spectrum of step (a), and (e) determining from the comparison whether modification of the antimicrobial compound, its modification product or its molecular target or of the substrate has occurred following the exposure, and establishing that the microorganism is potentially resistant to the antimicrobial compound when the modification is observed.Type: ApplicationFiled: April 19, 2016Publication date: August 11, 2016Inventors: Theo M. Luider, Jeroen van Kampen, Alexander F. Van Belkum, Wilhelm Goessens, Gero P. Hooff
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Publication number: 20160230208Abstract: The present invention provides a method for the amplification of at least a first and a second target nucleic acid that may be present in a fluid sample. The invention further provides a kit and an analytical system for carrying out said amplification.Type: ApplicationFiled: September 30, 2015Publication date: August 11, 2016Inventors: Meike Eickhoff, Niclas Hitziger, Anke Mussmann, Thomas W. Myers, Christopher Newhouse, Nicholas Newton, John Niemiec, Nancy Schoenbrunner, Edward S. Smith, Stephen Will, Heike Wilts, Dirk Zimmerman
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Publication number: 20160230209Abstract: Some embodiments describe a computer-implemented method for calibrating a fluorescent dye. The method can comprise imaging a sample holder, loaded into an instrument, at more than one channel. The sample holder can comprise a plurality of reaction sites and more than one dye type, with each dye occupying more than one reaction site. The method can further comprise identifying a peak channel for each dye on the sample holder, normalizing each channel to the peak channel for each dye, and producing a dye matrix that can comprise a set of dye reference values.Type: ApplicationFiled: February 5, 2016Publication date: August 11, 2016Inventors: Yong Chu, Jacob Freudenthal, Jeffrey Marks
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Publication number: 20160230210Abstract: An instrument for biological analysis includes a base, an excitation source, an optical sensor, an excitation optical system, and an emission optical system. The base is configured to receive a sample holder comprising a plurality of biological samples. The optical sensor is configured to receive emissions from the biological samples in response to the excitation source. The instrument may additionally include a sensor lens enclosed by a lens case and a focusing mechanism including a gear that engages the lens case, the focusing mechanism being accessible outside the enclosure for adjusting a focus. The may instrument further include a sensor aperture dispose along an emission optical path and a blocking structure disposed to cooperate with the sensor aperture such that none of the reflected radiation from an illuminated surface near the sample holder is received by the optical sensor that does not also reflect off another surface of the instrument.Type: ApplicationFiled: February 5, 2016Publication date: August 11, 2016Inventors: Mingsong CHEN, Kuan Moon BOO, Tiong Han TOH, Mauro AGUANNO, Soo Yong LAU, Huei Steven YEO, Wei Fuh TEO
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Publication number: 20160230211Abstract: A complex mixture is analyzed for multiple nucleic acid sequences (e.g., DNA or RNA sequences) simultaneously by target specific multiplex amplification followed by single molecule detection of amplicons by Atomic Force Microscopy (AFM). The presence or absence of target nucleic acids can be determined from the presence or absence of specific amplicons for those nucleic acids. In addition, quantification of target nucleic acids in the complex mixture is achieved by determination of the numbers of amplicons.Type: ApplicationFiled: September 11, 2014Publication date: August 11, 2016Inventors: Jason REED, Andrey MIKHEYKIN
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Publication number: 20160230212Abstract: The present invention provides a novel method that can analyze a target easily utilizing binding nucleic acid molecules and an analysis kit for use in the method. The analysis method of the present invention includes: a complex formation step of causing a binding nucleic acid molecule that binds to the target and a sample to come into contact with each other to form a complex of the binding nucleic acid molecule and the target in the sample; a nuclease treatment step of releasing a nucleic acid monomer from at least one of a complex fraction and a non-complex fraction by a nuclease treatment; an enzyme treatment step of reacting the released nucleic acid monomer with an enzyme for which the nucleic acid monomer is a substrate; a detection step of detecting the enzyme reaction; and an analysis step of analyzing the target that has formed the complex from the result of detecting the enzyme reaction.Type: ApplicationFiled: July 23, 2014Publication date: August 11, 2016Applicant: NEC Solution Innovators, Ltd.Inventors: Yoshihito YOSHIDA, Katsunori HORII, Iwao WAGA
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Publication number: 20160230213Abstract: A multiplexed polymerase chain reaction (PCR) DNA detection system and a method for DNA detection within the PCR system are provided. The PCR DNA detection system includes a color charge-coupled device (CCD) camera, fluorophore-quencher probes and an imaging chamber. The fluorophore-quencher probes are selected in response to fluorophores quenched by the fluorophore-quencher probes corresponding to three selected primary colors and peak channel responses of the CCD camera such that emission profiles of the fluorophores substantially match the three selected primary colors and peak emission profiles of the fluorophores correspond to the peak RGB channel responses of the CCD camera. A DNA sample and the fluorophore-quencher probes are located within the imaging chamber. The color CCD camera is focused on the imaging chamber for simultaneous detection of up to three targets from fluorescence of the DNA sample and the fluorophore-quencher probes.Type: ApplicationFiled: October 14, 2014Publication date: August 11, 2016Inventors: Jackie Y. YING, Saravana Kumar KUMARASAMY
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Publication number: 20160230214Abstract: An apparatus includes a robotic system providing movement in three orthogonal directions to an arm operable to receive a pipette tip and to facilitate movement of fluid into and out of the pipette tip. In addition, the apparatus can include a tray for receiving pipette tips, receptacles for receiving tubes, an apparatus for forming an emulsion, a device for forming particles that include copies of the polynucleotide, a device for enriching the particles and an apparatus for loading such particles onto a sensor array. The apparatus can further include receptacles for holding containers of reagent solutions. Optionally, the robot can include a gripper arm in addition to the pipette receiving arm.Type: ApplicationFiled: April 20, 2016Publication date: August 11, 2016Inventors: Kristopher BARBEE, Ryan JONES, Sean MCCUSKER, Maximilian CARPINO, John LEAMON, Jonathan SCHULTZ
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Publication number: 20160230215Abstract: A system and method for processing and detecting nucleic acids from a set of biological samples, comprising: a capture plate and a capture plate module configured to facilitate binding of nucleic acids within the set of biological samples to magnetic beads; a molecular diagnostic module configured to receive nucleic acids bound to magnetic beads, isolate nucleic acids, and analyze nucleic acids, comprising a cartridge receiving module, a heating/cooling subsystem and a magnet configured to facilitate isolation of nucleic acids, a valve actuation subsystem configured to control fluid flow through a microfluidic cartridge for processing nucleic acids, and an optical subsystem for analysis of nucleic acids; a fluid handling system configured to deliver samples and reagents to components of the system to facilitate molecular diagnostic protocols; and an assay strip configured to combine nucleic acid samples with molecular diagnostic reagents for analysis of nucleic acids.Type: ApplicationFiled: April 21, 2016Publication date: August 11, 2016Inventors: Jeffrey Williams, Sundaresh Brahmasandra, Michael T. Kusner
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Publication number: 20160230216Abstract: Disclosed are methods of identifying a methicillin-resistant Staphylococcus aureus (MRSA) in a sample wherein the methods involve detecting a S. aureus-specific nucleic acid sequence, mecA and mecC, in the sample. Kits for determining the presence of MRSA in a sample are also provided.Type: ApplicationFiled: September 22, 2014Publication date: August 11, 2016Applicant: QUEST DIAGNOSTICS INVESTMENTS INCORPORATEDInventors: Lakshmi Nair, Heather Vincent, Huong Mai, Michelle Tabb, Maurice Exner
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Publication number: 20160230217Abstract: A method for at least one of characterizing, diagnosing, and treating a condition associated with microbiome functional features in at least a subject, the method comprising: receiving an aggregate set of biological samples from a population of subjects; generating at least one of a microbiome composition dataset and a microbiome functional diversity dataset for the population of subjects; generating a characterization of the condition based upon features extracted from at least one of the microbiome composition dataset and the microbiome functional diversity dataset; based upon the characterization, generating a therapy model configured to correct the condition; and at an output device associated with the subject, promoting a therapy to the subject based upon the characterization and the therapy model.Type: ApplicationFiled: April 13, 2016Publication date: August 11, 2016Inventors: Zachary Apte, Daniel Almonacid, Jessica Richman, Siavosh Rezvan Behbahani
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Publication number: 20160230218Abstract: Provided herein are dynamic flux nucleic acid sequence amplification methods. The dynamic flux nucleic acid sequence amplification methods described herein are capable of amplifying nucleic acid sequences within a narrow temperature range. In some aspects, the disclosure provides for real-time dynamic flux nucleic acid sequence amplification methods.Type: ApplicationFiled: April 26, 2016Publication date: August 11, 2016Applicant: Fluoresentric, Inc.Inventor: Brian Erich Caplin
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Publication number: 20160230219Abstract: The invention discloses a method for determining a nucleotide sequence of a nucleic acid segment present in a biological sample, comprising the steps of: a) generating a fluorescent image of the sample by a protocol comprising immunofluorescence detection of at least five different target proteins in the sample; b) selecting a region of interest of the sample by comparing the image to a predetermined criterion; c) removing a subsample from the region of interest, and; d) determining a nucleotide sequence of a nucleic acid segment present in the subsample.Type: ApplicationFiled: January 21, 2016Publication date: August 11, 2016Inventors: John Richard Nelson, Qingyan Au, Wei Gao, Ryan Charles Heller, Nicholas Hoe, Nam Tran, Nichole Lea Wood
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Publication number: 20160230220Abstract: Sample preparation processes for in situ RNA or DNA analysis, methods and compositions therefor are provided. Processes provided herein allow DNA or RNA analysis to be carried out in the same tube or on an aliquot of the prepared sample without centrifugation or extraction. The preparation process can be carried out at room temperature in as little as seven minutes and is amenable to high throughput processing using manual or robotic platforms.Type: ApplicationFiled: February 11, 2016Publication date: August 11, 2016Inventors: Richard A. FEKETE, Annalee Nguyen
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Publication number: 20160230221Abstract: The present disclosure relates to a set of at least 100 single-stranded oligonucleotide probes directed against (or complementary to) portions of a genomic target sequence of interest. The present disclosure also relates to a method of detecting a genomic target sequence of interest using the set of oligonucleotide probes and a method of generating the set of oligonucleotide probes. Further the present disclosure relates to a kit comprising the set of oligonucleotide probes and at least one further component.Type: ApplicationFiled: April 22, 2016Publication date: August 11, 2016Inventors: Frank Bergmann, Walter Eberle, Thomas Fischer, Herbert von der Eltz
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Publication number: 20160230222Abstract: Methods, compositions, systems and kits to amplify or improve amplification of target-specific amplification products by reducing non-specific amplification products (e.g., primer-dimers) when amplifying multiple different nucleotide regions. The methods, compositions, systems and kits described herein may include, or include the use of, one or more resolvases that recognize and bind to and/or cut an aberrant DNA structure.Type: ApplicationFiled: February 11, 2016Publication date: August 11, 2016Inventor: Zhitong LIU
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Publication number: 20160230223Abstract: The invention is directed to methods of removing amplicons of non target and/or target nucleic acid sequences having one or more modified (e.g., methylated) nucleotides from a sample wherein the sample comprises the non target nucleic acid and a target nucleic acid sequence to be amplified.Type: ApplicationFiled: April 14, 2016Publication date: August 11, 2016Inventor: Kevin J. McKernan
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Publication number: 20160230224Abstract: Methods, systems, apparatus and machine readable media are disclosed to sequence nucleic acid. An example method includes subjecting a sequence of target nucleotide bases captured on a microtransponder to a plurality of sequencing reactions to build a sequence of labeled nucleotide bases that are complementary to and bound to the sequence of target nucleotide bases. The example method also includes identifying each labeled nucleotide base of the sequence of labeled nucleotide bases and each respective complementary target nucleotide base of the sequence of target nucleotide bases to which the labeled nucleotide base is bound after each sequencing reaction. In addition, each labeled nucleotide base of the sequence of labeled nucleotide bases and each respective complementary target nucleotide base of the sequence of target nucleotide bases to which the labeled nucleotide base is bound is associated with a microtransponder identification number.Type: ApplicationFiled: April 18, 2016Publication date: August 11, 2016Inventor: Mark A. Hayden
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Publication number: 20160230225Abstract: Provided herein are systems and methods for identifying cell-specific differentiation markers. In particular, provided herein are systems and methods for generating induced pluripotent cells (IPS) from human cells, differentiating the IPS into differentiated cells, and identifying differentiation specific markers.Type: ApplicationFiled: January 22, 2016Publication date: August 11, 2016Inventors: XIAOFANG XU, JON ODORICO, ERIK FORSBERG, AMBER A. MAEL, GUY TAGLIAVIA
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Publication number: 20160230226Abstract: Compositions, kits and methods for assessing the prognosis of idiopathic pulmonary fibrosis in patients are provided. In addition, compositions, kits and methods for diagnosing subtypes of idiopathic pulmonary fibrosis are provided. Also provided are methods for treating idiopathic pulmonary fibrosis.Type: ApplicationFiled: September 23, 2014Publication date: August 11, 2016Applicant: GENENTECH, INC.Inventors: Alexander R. Abbas, Joseph R. Arron, Sanjay Chandriani, Guiquan Jia, Nicholas J.I. Lewin-Koh, Daryle DePianto
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Publication number: 20160230227Abstract: The present invention relates to the diagnosis, prognosis, progression, and treatment of Alzheimer's disease. In particular, Alzheimer's disease can be characterized by the differential expression of certain genes, including ASB9, BIK, C7orfl6, NDP, NLRP2, PLP1, SLC45A2, TBX2, TUBB4, ZNF300, ADM2, FLJ35024, MT2A, PTGS2, ABCC2, ECEL1, EGFL8, FSTL5, and SMOC1. The present invention also relates to systems and methods of analyzing Alzheimer's disease, methods of screening for treatment agents for Alzheimer's disease and kits for the analysis of Alzheimer's disease.Type: ApplicationFiled: December 20, 2013Publication date: August 11, 2016Inventors: Andrew Sproul, Samson Jacob, Scott Noggle
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Publication number: 20160230228Abstract: The present invention relates to the NIPA-1 proteins and nucleic acids encoding the NIPA-1 proteins. The present invention further provides assays for the detection of NIPA-1 polymorphisms and mutations associated with disease states, as well as methods of screening for ligands and modulators of NIPA-1 proteins.Type: ApplicationFiled: February 3, 2016Publication date: August 11, 2016Inventors: John K. Fink, Shirley Rainier, Robert D. Nicholls, Jinghua Chai
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Publication number: 20160230229Abstract: A method and kit for detecting a genetic variant associated with a disease or disorder, including incompatibility with a pharmaceutical. The method and kit using a first nano-particle coupled to at least one morpholino nucleic acid probe comprising a target complimentary region base sequence that is a perfect match to a genetic variant sequence.Type: ApplicationFiled: September 17, 2014Publication date: August 11, 2016Inventors: Yanbing Zu, Jackie Y. Ying
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Publication number: 20160230230Abstract: The present invention relates to methods and kits for diagnosing ulcerative colitis in a subject. In particular, the present invention relates to a method for diagnosing ulcerative colitis in a subject comprising the steps consisting of determining in a sample obtained from the subject the expression level of at least one gene selected from the group consisting of ADH4, ADH6, ADHFE1, AKR1A1, AKR7A2, ALDH1A3, ALDH1L1, ALDH7A1, AOX1, BCHE, CBR3, CES1, CYP1B1, CYP2E1, CYP2W1, CYP4F11, CYP51A1, ESD, KCNAB2, COMT, GSTA4, GSTP1, INMT, MGST2, SULT2A1, TPMT, UGT1A4, UGT1A9, UGT2B7, ABCA1, ABCA2, ABCB1, ABCC1, ABCC10, ABCC5, ABCC6, ABCG2, ATP7A, SLC1A3, SLC7A5, SLC10A2, SLC15A1, SLC15A2, SLC19A2, SLC19A3, SLC22A3, SLC28A3, SLC29A2, SLC38A1, SLC38A5, SLC47A1, SLCO2B1, SLCO4C1, ARNT, FOXO1, HIF3A, NCOA2, NCOR2, NR1H3, NR3C1, PPARD, PPARGC1A, RARB, RXRB, and THRB.Type: ApplicationFiled: September 26, 2014Publication date: August 11, 2016Inventors: Eric Ogier-Denis, Yannick Ladeiro, Xavier Treton, Yoram Bouhnik, Yong-Ping Ding
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Publication number: 20160230231Abstract: The invention relates to genetic variants useful for evaluating creatine kinase levels in a subject and determining an Nupper limit of normal (ULN) CK level for a subject. ULN CK level is used in determining the pathological significance of measures of blood or plasma CK obtained from the subject. The methods and compositions of the invention are useful for providing a genetic-C ally determined or individualized ULN CK level, for diagnosing statin-induced myopathy and for providing statin therapy.Type: ApplicationFiled: October 17, 2014Publication date: August 11, 2016Inventors: Marie-Pierre Dube, Jean-Claude Tardif
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Publication number: 20160230232Abstract: The present invention discloses the identification of a fibrosis susceptibility gene locus, the CTGF gene locus, which can be used for detecting predisposition to, diagnosis and prognosis of fibrosis as well as for the screening of therapeutically active drugs. The invention resides, in particular, in a method which comprises detecting in a sample from the subject the presence of an alteration in the CTGF gene locus, the presence of said alteration being indicative of the presence or predisposition to fibrosis.Type: ApplicationFiled: February 16, 2016Publication date: August 11, 2016Inventors: ALAIN DESSEIN, VIOLAINE ARNAUD, CHRISTOPHE CHEVILLARD
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Publication number: 20160230233Abstract: Provided are methods and kits for determining predisposition of a subject to develop a kidney disease, by identifying in a sample of the subject at least one APOL1 polypeptide variant which is characterized by a higher trypanolytic activity on Trypanosoma brucei rhodesiense as compared to the trypanolytic activity of wild type APOL1 polypeptide as set forth in SEQ ID NO:1 on the Trypanosoma brucei rhodesiense under identical assay conditions; or at least one APOL1 nucleotide mutation in the APLO1 genomic sequence set forth in SEQ ID NO:3, wherein the at least one nucleotide mutation or polypeptide variant being in linkage disequlibrium (LD) with the S342G mutation in the APOL1 polypeptide set forth in SEQ ID NO:1, wherein presence of the APOL1 polypeptide variant indicates increased predisposition of the subject to develop the kidney disease.Type: ApplicationFiled: April 24, 2016Publication date: August 11, 2016Applicants: Rappaport Family Institute for Research in the Medical Sciences, Ramot at Tel-Aviv University Ltd.Inventors: Karl SKORECKI, Shay TZUR, Saharon ROSSET, Walter Gabriel WASSER, Doron M. BEHAR, Revital SHEMER
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Publication number: 20160230234Abstract: A method of making a prognosis as to whether a patient having renal cancer is like to survive in a tumour tissue sample obtained from the patient is provided. The method comprising determining the level of expression for each marker of a panel of markers comprising at least one housekeeping gene selected from the group consisting of ACTB, RPL13A, RPL9, and RPS29 and any combinations thereof and at least one prognostic gene selected from the group consisting of CXCL5, EFNA5, EMCN, G6PC, GFPT2, HIST2H3C, IGFBP1, LAMB3, MMP9, MOCOS, PLG, PRAME, RARRES1, SDPR, SLC6A19, TK1, KDELR3 and TSPAN7 and any combinations thereof, comparing the level of expression of each marker with a predetermined reference level associated with each marker, and determining the differential expression of each marker in the tumour tissue sample based on the expression parameter for each marker to provide a prognosis for renal cancer.Type: ApplicationFiled: September 17, 2014Publication date: August 11, 2016Inventors: Min-Han Tan, Yukti Choudhury, Puay Hoon Tan, Bin Tean Teh
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Publication number: 20160230235Abstract: The present invention provides a fluidic device, an exosome analysis method, a biomolecule analysis method, and a biomolecule detection method, which can analyze even the content of an exosome in a series of flows by introducing a sample into the device. A fluidic device of the present invention is a fluidic device which detects a biomolecule contained in an exosome in a sample, and includes: an exosome purification unit which has a layer modified with a compound having a hydrophobic chain and a hydrophilic chain; a biomolecule purification unit; a biomolecule detection unit; a first flow path which connects the exosome purification unit to the biomolecule purification unit; and a second flow path which connects the biomolecule purification unit to the biomolecule detection unit.Type: ApplicationFiled: March 24, 2016Publication date: August 11, 2016Inventors: Takanori ICHIKI, Masashi KOBAYASHI, Ayako HAYASHI, Shoichi TSUCHIYA, Takanori AKAGI, Taro UENO, Takashi FUNATSU, Kenji MIYAMOTO
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Publication number: 20160230236Abstract: The invention provides a method of making measurements on individual cells of a population, particularly cells that have identifying nucleic acid sequences, such as lymphoid cells. In one aspect, the invention provides a method of making multiparameter measurements on individual cells of such a population by carrying out a polymerase cycling assembly (PCA) reaction to link their identifying nucleic acid sequences to other cellular nucleic acids of interest. The fusion products of such PCA reaction are then sequenced and tabulated to generate multiparameter data for cells of the population.Type: ApplicationFiled: April 20, 2016Publication date: August 11, 2016Inventors: Malek Faham, Thomas Willis
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Publication number: 20160230237Abstract: A method for identification of circulating tumor cells (CTCs) in a blood sample uses magnetic enrichment and a nanowell assay. The CTCs are magnetically labeled with cancer cell markers conjugated to magnetic nanoparticles and then separated by passing the blood sample through a magnetic sifter. The enriched CTCs are then loaded into a microfluidic single-cell molecular assay comprising an array of 25,600 or more nanowells, each containing at most a single one of the CTCs. Using multiple fluorescent gene markers, simultaneous multiple-color multiplexed gene expression of the CTCs is performed, preferably using RT-PCR. Images of fluorescence signals from individual nanowells are analyzed to identify CTCs.Type: ApplicationFiled: April 20, 2016Publication date: August 11, 2016Inventors: Seung Min Park, Sugar Dixit, Richard P. Spillane, Erez Zadok
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Publication number: 20160230238Abstract: A leather lace beveler apparatus and method is provided for cutting bevels on opposed sides of a strip of leather lace that is pulled through the leather lace beveler apparatus. The apparatus has a main frame and a first knife housing secured to the main frame and has a knife blade extending through a slot in the main frame. A first fence to holds a leather strip in line and in engagement against the first knife blade to cut a bevel on one side of a strip of leather lace. A second knife housing is secured to the main frame and has a knife blade extending through a slot in the main frame. A second fence holds a leather strip in line and in engagement with the second knife blade to cut a bevel on the other side of a strip of leather lace. The leather lace is pulled through the leather lace beveler apparatus to cut the opposed bevels on the strip of leather lace with the strip of leather lace engaging the first and second knife blades and the first and second fences.Type: ApplicationFiled: October 16, 2015Publication date: August 11, 2016Inventor: L. Ronnie Nettles
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Publication number: 20160230239Abstract: A method of producing an article selected from a titanium article and a titanium alloy article comprises melting feed materials with a source of hydrogen to form a molten heat of titanium or a titanium alloy, and casting at least a portion of the molten heat to form a hydrogenated titanium or titanium alloy ingot. The hydrogenated ingot is deformed at an elevated temperature to form a worked article comprising a cross-sectional area smaller than a cross-sectional area of the hydrogenated ingot. The worked article is dehydrogenated to reduce a hydrogen content of the worked article. In certain non-limiting embodiments of the method, the dehydrogenated article comprises an average ?-phase particle size of less than 10 microns in the longest dimension.Type: ApplicationFiled: February 8, 2016Publication date: August 11, 2016Inventors: Richard L. Kennedy, Robert M. Davis, Rex W. Bradley, Robin M. Forbes Jones
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Publication number: 20160230240Abstract: Provided is a grain-oriented electrical steel sheet including: a forsterite base film formed on a surface of the steel sheet; and an insulating tension coating formed on the base film, in which when Ti intensity FX(Ti), Al intensity FX(Al), and Fe intensity FX(Fe) obtained through quantitative analysis by performing fluorescent X-ray analysis on the surface of the steel sheet satisfy FX(Ti)/FX(Al)?0.15 and FX(Ti)/FX(Fe)?0.004, the frequency of crystal boundaries of secondary recrystallized grains in the direction orthogonal to the rolling direction is 20 grain boundaries/100 mm or less, the mean thickness of the forsterite base film t(Fo) and the thickness of the insulating tension coating t(C) satisfies t(Fo)/t(C)?0.3, and magnetic domain refining treatment is performed by irradiation with a laser beam, plasma flame, or electron beam, a sufficient iron loss reducing effect is achieved in a range where coating detachment does not occur.Type: ApplicationFiled: August 26, 2014Publication date: August 11, 2016Applicant: JFE STEEL CORPORATIONInventors: Kunihiro Senda, Shigehiro Takajo, Tomoyuki Okubo
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Publication number: 20160230241Abstract: An electric resistance welded steel pipe for an oil well includes in terms of mass %: 0.02 to 0.14% of C, 0.05 to 0.50% of Si, 1.0 to 2.1% of Mn, 0.020% or less of P, 0.010% or less of S, 0.010 to 0.100% of Nb, 0.010 to 0.050% of Ti, 0.010 to 0.100% of Al, and 0.0100% or less of N. Contents of Cu, Ni, Cr, Mo, V, and B are 0 to 0.50%, 0 to 1.00%, 0 to 0.50%, 0 to 0.30%, 0 to 0.10%, and 0 to 0.0030%, respectively. Remainder consisting of Fe and unavoidable impurities. In a case that a full thickness specimen is subjected to a pipe axis direction tensile test, a tensile strength is 780 MPa or more, 0.2% proof stress/tensile strength is 0.80 or more, and 2% flow stress/tensile strength is from 0.85 to 0.98.Type: ApplicationFiled: December 11, 2014Publication date: August 11, 2016Applicant: NIPPON STEEL & SUMITOMO METAL CORPORATIONInventors: Takaaki FUKUSHI, Hideki HAMATANI, Masakazu OZAKI, Yuusuke ICHINOSE
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Publication number: 20160230242Abstract: A heat-resistant metal member suffering from creep damage is covered by a heat-resistant covering member and secured so as to contact an outer periphery of the heat-resistant metal member, and the heat-resistant metal member covered by the heat-resistant covering member is heated to a temperature of 1000° C. or greater. A compressive force accordingly acts on the heat-resistant metal member undergoing thermal expansion toward the outer periphery, enabling efficient regenerative heat treatment to be performed on the heat-resistant metal member suffering from creep damage, while restraining thermal expansion in the direction toward the outer periphery of the heat-resistant metal member.Type: ApplicationFiled: September 25, 2013Publication date: August 11, 2016Applicant: THE CHUGOKU ELECTRIC POWER CO., INC.Inventor: Hidetaka Nishida
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Publication number: 20160230243Abstract: In a heating step (S1) of inductively heating a steel outer ring (OR) to a target temperature, a plurality of outer rings (OR) retained coaxially by a retaining unit (3) are caused to sequentially pass through an opposing region of a pre-heating coil (22) having a variable output, and through an opposing region of a heating coil (21) having a constant output and being arranged coaxially with the pre-heating coil (22) on an exit side of the pre-heating coil (22). Thus, the plurality of outer rings (OR) are sequentially and inductively heated to the target temperature.Type: ApplicationFiled: September 8, 2014Publication date: August 11, 2016Inventors: Tsuneaki HIRAOKA, Eri HIRAYAMA, Shintaro SUZUKI