Substituted piperazines as KRAS G12C inhibitors
Provided herein are KRAS G12C inhibitors, such as composition of the same, and methods of using the same. These inhibitors are useful for treating a number of disorders, including pancreatic, colorectal, and lung cancers.
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This application is a divisional of U.S. patent application Ser. No. 16/438,349, filed Jun. 11, 2019, which claims the benefit of U.S. Provisional patent application 62/684,117 filed on Jun. 12, 2018, all of which specifications are hereby incorporated herein by reference in their entireties for all purposes.
The present application is being filed along with a sequence listing in electronic format. The sequence listing is provided as a file entitled A-2263-US03-DIV_SeqList_011822_ST25.txt, created Jan. 18, 2022, which is 15.5 kb in size. The information in the electronic format of the sequence listing is incorporated herein by reference in its entirety.
FIELD OF THE INVENTIONThe present invention relates to compounds that inhibit the KRAS G12C protein; methods of treating diseases or conditions, such as cancer, using the compounds; and pharmaceutical compositions containing the compounds.
BACKGROUNDKRAS gene mutations are common in pancreatic cancer, lung adenocarcinoma, colorectal cancer, gall bladder cancer, thyroid cancer, and bile duct cancer. KRAS mutations are also observed in about 25% of patients with NSCLC, and some studies have indicated that KRAS mutations are a negative prognostic factor in patients with NSCLC. Recently, V-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog (KRAS) mutations have been found to confer resistance to epidermal growth factor receptor (EGFR) targeted therapies in colorectal cancer; accordingly, the mutational status of KRAS can provide important information prior to the prescription of TKI therapy. Taken together, there is a need for new medical treatments for patients with pancreatic cancer, lung adenocarcinoma, or colorectal cancer, especially those who have been diagnosed to have such cancers characterized by a KRAS mutation, and including those who have progressed after chemotherapy.
The compounds disclosed herein can be in the form of a pharmaceutically acceptable salt. The compounds provided can be formulated into a pharmaceutical formulation comprising a compound disclosed herein and a pharmaceutically acceptable excipient.
Also provided is a method of inhibiting KRAS G12C in a cell, comprising contacting the cell with a compound or composition disclosed herein. Further provided is a method of treating cancer in a subject comprising administering to the subject a therapeutically effective amount of a compound or composition disclosed herein. In some embodiments, the cancer is lung cancer, pancreatic cancer, or colorectal cancer.
SUMMARYIn one aspect of the present invention, the invention provides a compound having a structure selected from the formula
or a stereoisomer thereof, an atropisomer thereof, a pharmaceutically acceptable salt thereof, a pharmaceutically acceptable salt of the stereoisomer thereof, or a pharmaceutically acceptable salt of the atropisomer thereof.
Another aspect of the present invention provides a compound having a structure selected from the formula
or a stereoisomer thereof, an atropisomer thereof, a pharmaceutically acceptable salt thereof, a pharmaceutically acceptable salt of the stereoisomer thereof, or a pharmaceutically acceptable salt of the atropisomer thereof.
Another aspect of the present invention provides various compounds, stereoisomers, atropisomers, pharmaceutically acceptable salts, pharmaceutically acceptable salts of the stereoisomers, and pharmaceutically acceptable salts of the atropisomers as described in the embodiments set forth below.
Another aspect of the present invention provides a pharmaceutical composition that includes the compound of any of the embodiments or the pharmaceutically acceptable salt thereof, and a pharmaceutically acceptable carrier or diluent.
Another aspect of the present invention provides a method of treating cancer. Such methods include: administering to a patient in need thereof a therapeutically effective amount of the compound of any of the embodiments or a pharmaceutically acceptable salt thereof. In some such methods, the cancer is a solid tumor. In some such methods, the cancer is selected from the group consisting of breast cancer, colorectal cancer, skin cancer, melanoma, ovarian cancer, kidney cancer, lung cancer, non-small cell lung cancer, cancer of the appendix, lymphoma, non-Hodgkin's lymphoma, myeloma, multiple myeloma, leukemia, and acute myelogenous leukemia. In some other such methods, the cancer is multiple myeloma.
In another aspect, the method further includes administering to a patient in need thereof a therapeutically effective amount of one or more additional pharmaceutically active compounds. For example, in some such methods the one or more additional pharmaceutically active compounds is pembrolizumab. In others, the one or more additional pharmaceutically active compounds is niolumab. In still other such methods, the one or more additional pharmaceutically active compounds is AMG 404. In still other such methods, the one or more additional pharmaceutically active compounds is daratumumab. In still other such methods, the one or more additional pharmaceutically active compound is a MEK inhibitor. In still other such methods, the MEK inhibitor is tremetinib. In still other such methods, the one or more additional pharmaceutically active compounds is an immunomodulatory agent (IMiD).
Unless otherwise defined, all technical and scientific terms used herein have the same meaning as commonly understood by one of ordinary skill in the art to which this disclosure belongs. Methods and materials are described herein for use in the present disclosure; other, suitable methods and materials known in the art can also be used. The materials, methods, and examples are illustrative only and not intended to be limiting. All publications, patent applications, patents, sequences, database entries, and other references mentioned herein are incorporated by reference in their entirety. In case of conflict, the present specification, including definitions, will control.
Other features and advantages of the disclosure will be apparent from the following detailed description and figures, and from the Claims.
DETAILED DESCRIPTION Definitions AbbreviationsThe following abbreviations may be used herein:
The use of the terms “a,” “an,” “the,” and similar referents in the context of describing the invention (especially in the context of the claims) are to be construed to cover both the singular and the plural, unless otherwise indicated. Recitation of ranges of values herein merely are intended to serve as a shorthand method of referring individually to each separate value falling within the range, unless otherwise indicated herein, and each separate value is incorporated into the specification as if it were individually recited herein. The use of any and all examples, or exemplary language (e.g., “such as”) provided herein, is intended to better illustrate the invention and is not a limitation on the scope of the invention unless otherwise claimed. No language in the specification should be construed as indicating any non-claimed element as essential to the practice of the invention.
As used herein, the term “alkyl” refers to straight chained and branched C1-C8 hydrocarbon groups, including but not limited to, methyl, ethyl, npropyl, ipropyl, nbutyl, secbutyl, tbutyl, npentyl, 2methylbutyl, 3methylbutyl, 2,2dimethylpropyl, nhexyl, 2methylpentyl, 3-methylpentyl, 4-methylpentyl, 2,2dimethylbutyl, 2,3dimethylbutyl, 3,3dimethylbutyl, and 2ethybutyl. The term Cm-n means the alkyl group has “m” to “n” carbon atoms. The term “alkylene” refers to an alkyl group having a substituent. An alkyl (e.g., methyl), or alkylene (e.g., —CH2—), group can be substituted with one or more, and typically one to three, of independently selected, for example, halo, trifluoromethyl, trifluoromethoxy, hydroxy, alkoxy, nitro, cyano, alkylamino, C1-6alkyl, C2-6alkenyl, C2-6alkynyl, —NC, amino, —CO2H, —CO2C1-C6alkyl, —OCOC1-C6alkyl, C3-C10 cycloalkyl, C3-C10 heterocycloalkyl, C5-C10aryl, and C5-C10 heteroaryl. The term “haloalkyl” specifically refers to an alkyl group wherein at least one, e.g., one to six, or all of the hydrogens of the alkyl group are substituted with halo atoms.
The terms “alkenyl” and “alkynyl” indicate an alkyl group that further includes a double bond or a triple bond, respectively.
As used herein, the term “halo” refers to fluoro, chloro, bromo, and iodo. The term “alkoxy” is defined as —OR, wherein R is alkyl.
As used herein, the term “amino” or “amine” interchangeably refers to a —NR2 group, wherein each R is, e.g., H or a substituent. In some embodiments, the amino group is further substituted to form an ammonium ion, e.g., NR3+. Ammonium moieties are specifically included in the definition of “amino” or “amine.” Substituents can be, for example, an alkyl, alkoxy, cycloalkyl, heterocycloalkyl, amide, or carboxylate. An R group may be further substituted, for example, with one or more, e.g., one to four, groups selected from halo, cyano, alkenyl, alkynyl, alkyl, cycloalkyl, heterocycloalkyl, aryl, heteroaryl, urea, carbonyl, carboxylate, amine, and amide. An “amide” or “amido” group interchangeably refers to a group similar to an amine or amino group but further including a C(O), e.g., —C(O)NR2. Some contemplated amino or amido groups (some with optional alkylene groups, e.g., alkylene-amino, or alkylene-amido) include CH2NH2, CH(CH3)NH2, CH(CH3)2NH2, CH2CH2NH2, CH2CH2N(CH3)2, CH2NHCH3, C(O)NHCH3, C(O)N(CH3)2, CH2C(O)NHphenyl, CH2NHC(O)CH3, CH2NHCH2CH2OH, CH2NHCH2CO2H, CH2NH(CH3)CH2CO2CH3, CH2NHCH2CH2OCH3, CH2NH(CH3)CH2CH2OCH3, CH2NH(CH3)CH2C(O)N(CH3)2, CH2NH(CH3)CH2C(O)NHCH3, CH2CH2CCH, CH2NMe2, CH2NH(CH3)CH2CH2OH, CH2NH(CH3)CH2CH2F, CH2N+(CH3)3, CH2NHCH2CHF2, CH2NHCH2CH3,
Collectively, antibodies form a family of plasma proteins known as immunoglobulins and comprise of immunoglobulin domains. (Janeway et al., Immunobiology: The Immune System in Health and Disease, 4th ed., Elsevier Science Ltd./Garland Publishing, 1999. As used herein, the term “antibody” refers to a protein having a conventional immunoglobulin format, comprising heavy and light chains, and comprising variable and constant regions. For example, an antibody may be an IgG which is a “Y-shaped” structure of two identical pairs of polypeptide chains, each pair having one “light” (typically having a molecular weight of about 25 kDa) and one “heavy” chain (typically having a molecular weight of about 50-70 kDa). An antibody has a variable region and a constant region. In IgG formats, the variable region is generally about 100-110 or more amino acids, comprises three complementarity determining regions (CDRs), is primarily responsible for antigen recognition, and substantially varies among other antibodies that bind to different antigens. The constant region allows the antibody to recruit cells and molecules of the immune system. The variable region is made of the N-terminal regions of each light chain and heavy chain, while the constant region is made of the C-terminal portions of each of the heavy and light chains. (Janeway et al., “Structure of the Antibody Molecule and the Immunoglobulin Genes”, Immunobiology: The Immune System in Health and Disease, 4th ed. Elsevier Science Ltd./Garland Publishing, (1999)).
The general structure and properties of CDRs of antibodies have been described in the art. Briefly, in an antibody scaffold, the CDRs are embedded within a framework in the heavy and light chain variable region where they constitute the regions largely responsible for antigen binding and recognition. A variable region typically comprises at least three heavy or light chain CDRs (Kabat et al., 1991. Sequences of Proteins of Immunological Interest, Public Health Service N.I.H., Bethesda, Md.; see also Chothia and Lesk, 1987, J. Mol. Biol. 196:901-917; Chothia et al., 1989, Nature 342: 877-883), within a framework region (designated framework regions 1-4, FR1, FR2, FR3, and FR4, by Kabat et al., 1991; see also Chothia and Lesk, 1987, supra).
Antibodies can comprise any constant region known in the art. Human light chains are classified as kappa and lambda light chains. Heavy chains are classified as mu, delta, gamma, alpha, or epsilon, and define the antibody's isotype as IgM, IgD, IgG, IgA, and IgE, respectively. IgG has several subclasses, including, but not limited to IgG1, IgG2, IgG3, and IgG4. IgM has subclasses, including, but not limited to, IgM1 and IgM2. Embodiments of the present disclosure include all such classes or isotypes of antibodies. The light chain constant region can be, for example, a kappa- or lambda-type light chain constant region, e.g., a human kappa- or lambda-type light chain constant region. The heavy chain constant region can be, for example, an alpha-, delta-, epsilon-, gamma-, or mu-type heavy chain constant regions, e.g., a human alpha-, delta-, epsilon-, gamma-, or mu-type heavy chain constant region. Accordingly, in exemplary embodiments, the antibody is an antibody of isotype IgA, IgD, IgE, IgG, or IgM, including any one of IgG1, IgG2, IgG3 or IgG4.
The antibody can be a monoclonal antibody or a polyclonal antibody. In some embodiments, the antibody comprises a sequence that is substantially similar to a naturally-occurring antibody produced by a mammal, e.g., mouse, rabbit, goat, horse, chicken, hamster, human, and the like. In this regard, the antibody can be considered as a mammalian antibody, e.g., a mouse antibody, rabbit antibody, goat antibody, horse antibody, chicken antibody, hamster antibody, human antibody, and the like. In certain aspects, the antibody is a human antibody. In certain aspects, the antibody is a chimeric antibody or a humanized antibody. The term “chimeric antibody” refers to an antibody containing domains from two or more different antibodies. A chimeric antibody can, for example, contain the constant domains from one species and the variable domains from a second, or more generally, can contain stretches of amino acid sequence from at least two species. A chimeric antibody also can contain domains of two or more different antibodies within the same species. The term “humanized” when used in relation to antibodies refers to antibodies having at least CDR regions from a non-human source which are engineered to have a structure and immunological function more similar to true human antibodies than the original source antibodies. For example, humanizing can involve grafting a CDR from a non-human antibody, such as a mouse antibody, into a human antibody. Humanizing also can involve select amino acid substitutions to make a non-human sequence more similar to a human sequence.
An antibody can be cleaved into fragments by enzymes, such as, e.g., papain and pepsin. Papain cleaves an antibody to produce two Fab fragments and a single Fc fragment. Pepsin cleaves an antibody to produce a F(ab′)2 fragment and a pFc′ fragment. As used herein, the term “antigen binding antibody fragment refers to a portion of an antibody molecule that is capable of binding to the antigen of the antibody and is also known as “antigen-binding fragment” or “antigen-binding portion”. In exemplary instances, the antigen binding antibody fragment is a Fab fragment or a F(ab′)2 fragment.
The architecture of antibodies has been exploited to create a growing range of alternative formats that span a molecular-weight range of at least about 12-150 kDa and has a valency (n) range from monomeric (n=1), to dimeric (n=2), to trimeric (n=3), to tetrameric (n=4), and potentially higher; such alternative formats are referred to herein as “antibody protein products”. Antibody protein products include those based on the full antibody structure and those that mimic antibody fragments which retain full antigen-binding capacity, e.g., scFvs, Fabs and VHH/VH (discussed below). The smallest antigen binding antibody fragment that retains its complete antigen binding site is the Fv fragment, which consists entirely of variable (V) regions. A soluble, flexible amino acid peptide linker is used to connect the V regions to a scFv (single chain fragment variable) fragment for stabilization of the molecule, or the constant (C) domains are added to the V regions to generate a Fab fragment [fragment, antigen-binding]. Both scFv and Fab fragments can be easily produced in host cells, e.g., prokaryotic host cells. Other antibody protein products include disulfide-bond stabilized scFv (ds-scFv), single chain Fab (scFab), as well as di- and multimeric antibody formats like dia-, tria- and tetra-bodies, or minibodies (miniAbs) that comprise different formats consisting of scFvs linked to oligomerization domains. The smallest fragments are VHH/VH of camelid heavy chain Abs as well as single domain Abs (sdAb). The building block that is most frequently used to create novel antibody formats is the single-chain variable (V)-domain antibody fragment (scFv), which comprises V domains from the heavy and light chain (VH and VL domain) linked by a peptide linker of ˜15 amino acid residues. A peptibody or peptide-Fc fusion is yet another antibody protein product. The structure of a peptibody consists of a biologically active peptide grafted onto an Fc domain. Peptibodies are well-described in the art. See, e.g., Shimamoto et al., mAbs 4(5): 586-591 (2012).
Other antibody protein products include a single chain antibody (SCA); a diabody; a triabody; a tetrabody; bispecific or trispecific antibodies, and the like. Bispecific antibodies can be divided into five major classes: BsIgG, appended IgG, BsAb fragments, bispecific fusion proteins and BsAb conjugates. See, e.g., Spiess et al., Molecular Immunology 67(2) Part A: 97-106 (2015).
As used herein, the term “aryl” refers to a C6-14 monocyclic or polycyclic aromatic group, preferably a C6-10 monocyclic or bicyclic aromatic group, or C10-14 polycyclic aromatic group. Examples of aryl groups include, but are not limited to, phenyl, naphthyl, fluorenyl, azulenyl, anthryl, phenanthryl, pyrenyl, biphenyl, and terphenyl. Aryl also refers to C10-14 bicyclic and tricyclic carbon rings, where one ring is aromatic and the others are saturated, partially unsaturated, or aromatic, for example, dihydronaphthyl, indenyl, indanyl, or tetrahydronaphthyl (tetralinyl). Unless otherwise indicated, an aryl group can be unsubstituted or substituted with one or more, and in particular one to four, groups independently selected from, for example, halo, C1-6alkyl, C2-6alkenyl, C2-6alkynyl, —CF3, —OCF3, —NO2, —CN, —NC, —OH, alkoxy, amino, —CO2H, —CO2C1-C6alkyl, —OCOC1-C6alkyl, C3-C10 cycloalkyl, C3-C10 heterocycloalkyl, C5-C10aryl, and C5-C10 heteroaryl.
As used herein, the term “carbocyclic ring” refers to a monocyclic ring which only includes carbon atoms as ring members. Such rings may be fully saturated, partially saturated, or aromatic and may include 3 to 10 carbon atoms.
As used herein, the term “cycloalkyl” refers to a monocyclic or polycyclic non-aromatic carbocyclic ring, where the polycyclic ring can be fused, bridged, or spiro. The carbocyclic ring can have 3 to 10 carbon ring atoms. Contemplated carbocyclic rings include, but are not limited to, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, cycloheptyl, cyclooctyl, and cyclononyl.
As used herein, the term “heterocycloalkyl” means a monocyclic or polycyclic (e.g., bicyclic), saturated or partially unsaturated, ring system containing 3 or more (e.g., 3 to 12, 4 to 10, 4 to 8, or 5 to 7) total atoms, of which one to five (e.g., 1, 2, 3, 4, or 5) of the atoms are independently selected from nitrogen, oxygen, and sulfur. Nonlimiting examples of heterocycloalkyl groups include azetidinyl, pyrrolidinyl, piperidinyl, piperazinyl, dihydropyrrolyl, morpholinyl, thiomorpholinyl, dihydropyridinyl, oxacycloheptyl, dioxacycloheptyl, thiacycloheptyl, and diazacycloheptyl.
Unless otherwise indicated, a cycloalkyl or heterocycloalkyl group can be unsubstituted or substituted with one or more, and in particular one to four, groups. Some contemplated substituents include halo, C1-6alkyl, C2-6alkenyl, C2-6alkynyl, —OCF3, —NO2, —CN, —NC, —OH, alkoxy, amino, —CO2H, —CO2C1-C6alkyl, —OCOC1-C8alkyl, C3-C10 cycloalkyl, C3-C10 heterocycloalkyl, C5-C10aryl, and C5-C10 heteroaryl.
As used herein, the term “heteroaryl” refers to a monocyclic or polycyclic ring system (for example, bicyclic) containing one to three aromatic rings and containing one to four (e.g., 1, 2, 3, or 4) heteroatoms selected from nitrogen, oxygen, and sulfur in an aromatic ring. In certain embodiments, the heteroaryl group has from 5 to 20, from 5 to 15, from 5 to 10 ring, or from 5 to 7 atoms. Heteroaryl also refers to C10-14 bicyclic and tricyclic rings, where one ring is aromatic and the others are saturated, partially unsaturated, or aromatic. Examples of heteroaryl groups include, but are not limited to, furanyl, imidazolyl, isothiazolyl, isoxazolyl, oxadiazolyl, oxazolyl, pyrazinyl, pyrazolyl, pyridazinyl, pyridyl, pyrimidinyl, pyrrolyl, thiadiazolyl, thiazolyl, thienyl, tetrazolyl, triazinyl, triazolyl, benzofuranyl, benzimidazolyl, benzoisoxazolyl, benzopyranyl, benzothiadiazolyl, benzothiazolyl, benzothienyl, benzothiophenyl, benzotriazolyl, benzoxazolyl, furopyridyl, imidazopyridinyl, imidazothiazolyl, indolizinyl, indolyl, indazolyl, isobenzofuranyl, isobenzothienyl, isoindolyl, isoquinolinyl, isothiazolyl, naphthyridinyl, oxazolopyridinyl, phthalazinyl, pteridinyl, purinyl, pyridopyridyl, pyrrolopyridyl, quinolinyl, quinoxalinyl, quiazolinyl, thiadiazolopyrimidyl, and thienopyridyl. Unless otherwise indicated, a heteroaryl group can be unsubstituted or substituted with one or more, and in particular one to four or one or two, substituents. Contemplated substituents include halo, C1-6alkyl, C2-6alkenyl, C2-6alkynyl, —OCF3, —NO2, —CN, —NC, —OH, alkoxy, amino, —CO2H, —CO2C1-C6alkyl. —OCOC1-C6alkyl, C3-C10 cycloalkyl, C3-C10 heterocycloalkyl, C5-C10aryl, and C5-C10 heteroaryl.
As used herein, the term Boc refers to the structure
As used herein, the term Cbz refers to the structure
As used herein, the term Bn refers to the structure
As used herein, the term trifluoroacetaide refers to the structure
As used herein, the term trityl refers to the structure
As used herein, the term tosyl refers to the structure
As used herein, the term Troc refers to the structure
As used herein, the term Teoc refers to the structure
As used herein, the term Alloc refers to the structure
As used herein, the term Fmoc refers to the structure.
The compounds disclosed herein include all pharmaceutically acceptable isotopically-labeled compounds wherein one or more atoms of the compounds disclosed herein are replaced by atoms having the same atomic number, but an atomic mass or mass number different from the atomic mass or mass number usually found in nature. Examples of isotopes that can be incorporated into the disclosed compounds include isotopes of hydrogen, carbon, nitrogen, oxygen, phosphorous, fluorine, chlorine, and iodine, such as 2H, 3H, 11C, 13C, 14C, 13N, 15N, 15O, 17O, 18O, 31P, 32P, 35P, 18O, 36Cl, 123I, and 125I, respectively. These radiolabelled compounds could be useful to help determine or measure the effectiveness of the compounds, by characterizing, for example, the site or mode of action, or binding affinity to pharmacologically important site of action. Certain isotopically-labeled compounds of the disclosure, for example, those incorporating a radioactive isotope, are useful in drug and/or substrate tissue distribution studies. The radioactive isotopes tritium, i.e. 3H, and carbon-14, i.e. 14C, are particularly useful for this purpose in view of their ease of incorporation and ready means of detection.
Substitution with heavier isotopes such as deuterium, i.e. 2H, may afford certain therapeutic advantages resulting from greater metabolic stability, for example, increased in vivo half-life or reduced dosage requirements, and hence are preferred in some circumstances.
Substitution with positron emitting isotopes, such as 11C, 18F, 15O and 13N, can be useful in Positron Emission Topography (PET) studies for examining substrate receptor occupancy. Isotopically-labeled compounds of structure (I) can generally be prepared by conventional techniques known to those skilled in the art or by processes analogous to those described in the Preparations and Examples as set out below using an appropriate isotopically-labeled reagent in place of the non-labeled reagent previously employed.
Isotopically-labeled compounds as disclosed herein can generally be prepared by conventional techniques known to those skilled in the art or by processes analogous to those described in the accompanying examples and schemes using an appropriate isotopically-labeled reagent in place of the non-labeled reagent previously employed.
Certain of the compounds as disclosed herein may exist as stereoisomers (i.e., isomers that differ only in the spatial arrangement of atoms) including optical isomers and conformational isomers (or conformers). The compounds disclosed herein include all stereoisomers, both as pure individual stereoisomer preparations and enriched preparations of each, and both the racemic mixtures of such stereoisomers as well as the individual diastereomers and enantiomers that may be separated according to methods that are known to those skilled in the art. Additionally, the compounds disclosed herein include all tautomeric forms of the compounds.
Certain of the compounds disclosed herein may exist as atropisomers, which are conformational stereoisomers that occur when rotation about a single bond in the molecule is prevented, or greatly slowed, as a result of steric interactions with other parts of the molecule. The compounds disclosed herein include all atropisomers, both as pure individual atropisomer preparations, enriched preparations of each, or a non-specific mixture of each. Where the rotational barrier about the single bond is high enough, and interconversion between conformations is slow enough, separation and isolation of the isomeric species may be permitted. For example, groups such as, but not limited to, the following groups
may exhibit restricted rotation.
In one embodiment of the present invention, the present invention comprises a compound having a structure selected from the formula
or a stereoisomer thereof, an atropisomer thereof, a pharmaceutically acceptable salt thereof, a pharmaceutically acceptable salt of the stereoisomer thereof, or a pharmaceutically acceptable salt of the atropisomer thereof.
Embodiment 2In another embodiment of the present invention, the present invention comprises a compound having a structure selected from the formula
or stereoisomer thereof, an atropisomer thereof, a pharmaceutically acceptable salt thereof, a pharmaceutically acceptable salt of the stereoisomer thereof, or a pharmaceutically acceptable salt of the atropisomer thereof.
In another embodiment of the present invention, the present invention comprises the compound of any one of embodiments 1-2 in the form of a pharmaceutically acceptable salt.
Embodiment 4In another embodiment of the present invention, the present invention comprises a pharmaceutical composition comprising the compound of any one of embodiments 1-3 and a pharmaceutically acceptable excipient.
Embodiment 5In another embodiment of the present invention, the present invention comprises a method of inhibiting KRAS G12C in a cell, comprising contacting the cell with the compound of any one of embodiments 1-3 or the composition of embodiment 4.
Embodiment 6In another embodiment of the present invention, the present invention comprises a method of treating cancer in a subject comprising administering to the subject a therapeutically effective amount of the compound of any one of embodiments 1-3 or the composition of embodiment 4.
Embodiment 7In another embodiment of the present invention, the present invention comprises the method of embodiment 6, wherein the cancer is lung cancer, pancreatic cancer, or colorectal cancer.
Embodiment 8In another embodiment of the present invention, the present invention comprises the method of embodiment 7, wherein the cancer is lung cancer.
Embodiment 9In another embodiment of the present invention, the present invention comprises the method of embodiment 7, wherein the cancer is pancreatic cancer.
Embodiment 10In another embodiment of the present invention, the present invention comprises the method of embodiment 7, wherein the cancer is colorectal cancer.
Embodiment 11In another embodiment of the present invention, the present invention comprises the method of embodiment 6, further comprising administering to the patient in need thereof a therapeutically effective amount of one or more additional pharmaceutically active compounds.
Embodiment 12In another embodiment of the present invention, the present invention comprises the method of embodiment 11, wherein the one or more additional pharmaceutically active compounds is an anti-PD-1 antibody
Embodiment 13In another embodiment of the present invention, the present invention comprises the method of embodiment 12, wherein the anti-PD-1 antibody is pembrolizumab.
Embodiment 14In another embodiment of the present invention, the present invention comprises the method of embodiment 12 wherein the anti-PD-1 antibody is niolumab.
Embodiment 15In another embodiment of the present invention, the present invention comprises the method of embodiment 11, wherein the one or more additional pharmaceutically active compounds is an MCI-1 inhibitor.
Embodiment 16In another embodiment of the present invention, the present invention comprises the method of embodiment 11, wherein the one or more additional pharmaceutically active compounds is a MEK inhibitor.
Embodiment 17In another embodiment of the present invention, the present invention comprises the method of embodiment 11, wherein the one or more additional pharmaceutically active compounds is daratumumab.
Embodiment 18In another embodiment of the present invention, the present invention comprises the method of embodiment 11, wherein the one or more additional pharmaceutically active compounds is an immunomodulatory agent.
Embodiment 19In another embodiment of the present invention, the present invention comprises the use of a compound according to any one of embodiments 1-3 for treating cancer in a subject.
Embodiment 20In another embodiment of the present invention, the present invention comprises a compound according to any one of embodiments 1-3 in the preparation of a medicament for treating cancer.
Embodiment 21In another embodiment of the present invention, the present invention comprises the compound according to embodiment 20, wherein the cancer isnon-small cell lung cancer.
Synthesis of Disclosed CompoundsCompounds as disclosed herein can be synthesized via a number of specific methods. The examples which outline specific synthetic routes, and the generic schemes below are meant to provide guidance to the ordinarily skilled synthetic chemist, who will readily appreciate that the solvent, concentration, reagent, protecting group, order of synthetic steps, time, temperature, and the like can be modified as necessary, well within the skill and judgment of the ordinarily skilled artisan.
Pharmaceutical Compositions, Dosing, and Routes of AdministrationAlso provided herein are pharmaceutical compositions that include a compound as disclosed herein, together with a pharmaceutically acceptable excipient, such as, for example, a diluent or carrier. Compounds and pharmaceutical compositions suitable for use in the present invention include those wherein the compound can be administered in an effective amount to achieve its intended purpose. Administration of the compound described in more detail below.
Suitable pharmaceutical formulations can be determined by the skilled artisan depending on the route of administration and the desired dosage. See, e.g., Remington's Pharmaceutical Sciences, 1435-712 (18th ed., Mack Publishing Co, Easton, Pennsylvania, 1990). Formulations may influence the physical state, stability, rate of in vivo release and rate of in vivo clearance of the administered agents. Depending on the route of administration, a suitable dose may be calculated according to body weight, body surface areas or organ size. Further refinement of the calculations necessary to determine the appropriate treatment dose is routinely made by those of ordinary skill in the art without undue experimentation, especially in light of the dosage information and assays disclosed herein as well as the pharmacokinetic data obtainable through animal or human clinical trials.
The phrases “pharmaceutically acceptable” or “pharmacologically acceptable” refer to molecular entities and compositions that do not produce adverse, allergic, or other untoward reactions when administered to an animal or a human. As used herein, “pharmaceutically acceptable” includes any and all solvents, dispersion media, coatings, antibacterial and antifungal agents, isotonic and absorption delaying agents and the like. The use of such excipients for pharmaceutically active substances is well known in the art. Except insofar as any conventional media or agent is incompatible with the therapeutic compositions, its use in therapeutic compositions is contemplated. Supplementary active ingredients also can be incorporated into the compositions. In exemplary embodiments, the formulation may comprise corn syrup solids, high-oleic safflower oil, coconut oil, soy oil, L-leucine, calcium phosphate tribasic, L-tyrosine, L-proline, L-lysine acetate, DATEM (an emulsifier), L-glutamine, L-valine, potassium phosphate dibasic, L-isoleucine, L-arginine, L-alanine, glycine, L-asparagine monohydrate, L-serine, potassium citrate, L-threonine, sodium citrate, magnesium chloride, L-histidine, L-methionine, ascorbic acid, calcium carbonate, L-glutamic acid, L-cystine dihydrochloride, L-tryptophan, L-aspartic acid, choline chloride, taurine, m-inositol, ferrous sulfate, ascorbyl palmitate, zinc sulfate, L-carnitine, alpha-tocopheryl acetate, sodium chloride, niacinamide, mixed tocopherols, calcium pantothenate, cupric sulfate, thiamine chloride hydrochloride, vitamin A palmitate, manganese sulfate, riboflavin, pyridoxine hydrochloride, folic acid, beta-carotene, potassium iodide, phylloquinone, biotin, sodium selenate, chromium chloride, sodium molybdate, vitamin D3 and cyanocobalamin.
The compound can be present in a pharmaceutical composition as a pharmaceutically acceptable salt. As used herein, “pharmaceutically acceptable salts” include, for example base addition salts and acid addition salts.
Pharmaceutically acceptable base addition salts may be formed with metals or amines, such as alkali and alkaline earth metals or organic amines. Pharmaceutically acceptable salts of compounds may also be prepared with a pharmaceutically acceptable cation. Suitable pharmaceutically acceptable cations are well known to those skilled in the art and include alkaline, alkaline earth, ammonium and quaternary ammonium cations. Carbonates or hydrogen carbonates are also possible. Examples of metals used as cations are sodium, potassium, magnesium, ammonium, calcium, or ferric, and the like. Examples of suitable amines include isopropylamine, trimethylamine, histidine, N,N′-dibenzylethylenediamine, chloroprocaine, choline, diethanolamine, dicyclohexylamine, ethylenediamine, N-methylglucamine, and procaine.
Pharmaceutically acceptable acid addition salts include inorganic or organic acid salts. Examples of suitable acid salts include the hydrochlorides, formates, acetates, citrates, salicylates, nitrates, phosphates. Other suitable pharmaceutically acceptable salts are well known to those skilled in the art and include, for example, formic, acetic, citric, oxalic, tartaric, or mandelic acids, hydrochloric acid, hydrobromic acid, sulfuric acid or phosphoric acid; with organic carboxylic, sulfonic, sulfo or phospho acids or N-substituted sulfamic acids, for example acetic acid, trifluoroacetic acid (TFA), propionic acid, glycolic acid, succinic acid, maleic acid, hydroxymaleic acid, methylmaleic acid, fumaric acid, malic acid, tartaric acid, lactic acid, oxalic acid, gluconic acid, glucaric acid, glucuronic acid, citric acid, benzoic acid, cinnamic acid, mandelic acid, salicylic acid, 4-aminosalicylic acid, 2-phenoxybenzoic acid, 2-acetoxybenzoic acid, embonic acid, nicotinic acid or isonicotinic acid; and with amino acids, such as the 20 alpha amino acids involved in the synthesis of proteins in nature, for example glutamic acid or aspartic acid, and also with phenylacetic acid, methanesulfonic acid, ethanesulfonic acid, 2-hydroxyethanesulfonic acid, ethane 1,2-disulfonic acid, benzenesulfonic acid, 4-methylbenzenesulfonic acid, naphthalene 2-sulfonic acid, naphthalene 1,5-disulfonic acid, 2- or 3-phosphoglycerate, glucose 6-phosphate. N-cyclohexylsulfamic acid (with the formation of cyclamates), or with other acid organic compounds, such as ascorbic acid.
Pharmaceutical compositions containing the compounds disclosed herein can be manufactured in a conventional manner, e.g., by conventional mixing, dissolving, granulating, dragee-making, levigating, emulsifying, encapsulating, entrapping, or lyophilizing processes. Proper formulation is dependent upon the route of administration chosen.
For oral administration, suitable compositions can be formulated readily by combining a compound disclosed herein with pharmaceutically acceptable excipients such as carriers well known in the art. Such excipients and carriers enable the present compounds to be formulated as tablets, pills, dragees, capsules, liquids, gels, syrups, slurries, suspensions and the like, for oral ingestion by a patient to be treated. Pharmaceutical preparations for oral use can be obtained by adding a compound as disclosed herein with a solid excipient, optionally grinding a resulting mixture, and processing the mixture of granules, after adding suitable auxiliaries, if desired, to obtain tablets or dragee cores. Suitable excipients include, for example, fillers and cellulose preparations. If desired, disintegrating agents can be added. Pharmaceutically acceptable ingredients are well known for the various types of formulation and may be for example binders (e.g., natural or synthetic polymers), lubricants, surfactants, sweetening and flavoring agents, coating materials, preservatives, dyes, thickeners, adjuvants, antimicrobial agents, antioxidants and carriers for the various formulation types.
When a therapeutically effective amount of a compound disclosed herein is administered orally, the composition typically is in the form of a solid (e.g., tablet, capsule, pill, powder, or troche) or a liquid formulation (e.g., aqueous suspension, solution, elixir, or syrup).
When administered in tablet form, the composition can additionally contain a functional solid and/or solid carrier, such as a gelatin or an adjuvant. The tablet, capsule, and powder can contain about 1 to about 95% compound, and preferably from about 15 to about 90% compound.
When administered in liquid or suspension form, a functional liquid and/or a liquid carrier such as water, petroleum, or oils of animal or plant origin can be added. The liquid form of the composition can further contain physiological saline solution, sugar alcohol solutions, dextrose or other saccharide solutions, or glycols. When administered in liquid or suspension form, the composition can contain about 0.5 to about 90% by weight of a compound disclosed herein, and preferably about 1 to about 50% of a compound disclosed herein. In one embodiment contemplated, the liquid carrier is non-aqueous or substantially non-aqueous. For administration in liquid form, the composition may be supplied as a rapidly-dissolving solid formulation for dissolution or suspension immediately prior to administration.
When a therapeutically effective amount of a compound disclosed herein is administered by intravenous, cutaneous, or subcutaneous injection, the composition is in the form of a pyrogen-free, parenterally acceptable aqueous solution. The preparation of such parenterally acceptable solutions, having due regard to pH, isotonicity, stability, and the like, is within the skill in the art. A preferred composition for intravenous, cutaneous, or subcutaneous injection typically contains, in addition to a compound disclosed herein, an isotonic vehicle. Such compositions may be prepared for administration as solutions of free base or pharmacologically acceptable salts in water suitably mixed with a surfactant, such as hydroxypropylcellulose. Dispersions also can be prepared in glycerol, liquid polyethylene glycols, and mixtures thereof and in oils. Under ordinary conditions of storage and use, these preparations can optionally contain a preservative to prevent the growth of microorganisms.
Injectable compositions can include sterile aqueous solutions, suspensions, or dispersions and sterile powders for the extemporaneous preparation of sterile injectable solutions, suspensions, or dispersions. In all embodiments the form must be sterile and must be fluid to the extent that easy syringability exists. It must be stable under the conditions of manufacture and storage and must resist the contaminating action of microorganisms, such as bacteria and fungi, by optional inclusion of a preservative. The carrier can be a solvent or dispersion medium containing, for example, water, ethanol, polyol (e.g., glycerol, propylene glycol, and liquid polyethylene glycol, and the like), suitable mixtures thereof, and vegetable oils. In one embodiment contemplated, the carrier is non-aqueous or substantially non-aqueous. The proper fluidity can be maintained, for example, by the use of a coating, such as lecithin, by the maintenance of the required particle size of the compound in the embodiment of dispersion and by the use of surfactants. The prevention of the action of microorganisms can be brought about by various antibacterial and antifungal agents, for example, parabens, chlorobutanol, phenol, sorbic acid, thimerosal, and the like. In many embodiments, it will be preferable to include isotonic agents, for example, sugars or sodium chloride. Prolonged absorption of the injectable compositions can be brought about by the use in the compositions of agents delaying absorption, for example, aluminum monostearate and gelatin.
Sterile injectable solutions are prepared by incorporating the active compounds in the required amount in the appropriate solvent with various of the other ingredients enumerated above, as required, followed by filtered sterilization. Generally, dispersions are prepared by incorporating the various sterilized active ingredients into a sterile vehicle which contains the basic dispersion medium and the required other ingredients from those enumerated above. In the embodiment of sterile powders for the preparation of sterile injectable solutions, the preferred methods of preparation are vacuum-drying and freeze-drying techniques which yield a powder of the active ingredient plus any additional desired ingredient from a previously sterile-filtered solution thereof.
Slow release or sustained release formulations may also be prepared in order to achieve a controlled release of the active compound in contact with the body fluids in the GI tract, and to provide a substantially constant and effective level of the active compound in the blood plasma. For example, release can be controlled by one or more of dissolution, diffusion, and ion-exchange. In addition, the slow release approach may enhance absorption via saturable or limiting pathways within the GI tract. For example, the compound may be embedded for this purpose in a polymer matrix of a biological degradable polymer, a water-soluble polymer or a mixture of both, and optionally suitable surfactants. Embedding can mean in this context the incorporation of micro-particles in a matrix of polymers. Controlled release formulations are also obtained through encapsulation of dispersed micro-particles or emulsified micro-droplets via known dispersion or emulsion coating technologies.
For administration by inhalation, compounds of the present invention are conveniently delivered in the form of an aerosol spray presentation from pressurized packs or a nebulizer, with the use of a suitable propellant. In the embodiment of a pressurized aerosol, the dosage unit can be determined by providing a valve to deliver a metered amount. Capsules and cartridges of, e.g., gelatin, for use in an inhaler or insufflator can be formulated containing a powder mix of the compound and a suitable powder base such as lactose or starch.
The compounds disclosed herein can be formulated for parenteral administration by injection (e.g., by bolus injection or continuous infusion). Formulations for injection can be presented in unit dosage form (e.g., in ampules or in multidose containers), with an added preservative. The compositions can take such forms as suspensions, solutions, or emulsions in oily or aqueous vehicles, and can contain formulatory agents such as suspending, stabilizing, and/or dispersing agents.
Pharmaceutical formulations for parenteral administration include aqueous solutions of the compounds in water-soluble form. Additionally, suspensions of the compounds can be prepared as appropriate oily injection suspensions. Suitable lipophilic solvents or vehicles include fatty oils or synthetic fatty acid esters. Aqueous injection suspensions can contain substances which increase the viscosity of the suspension. Optionally, the suspension also can contain suitable stabilizers or agents that increase the solubility of the compounds and allow for the preparation of highly concentrated solutions. Alternatively, a present composition can be in powder form for constitution with a suitable vehicle (e.g., sterile pyrogen-free water) before use.
Compounds disclosed herein also can be formulated in rectal compositions, such as suppositories or retention enemas (e.g., containing conventional suppository bases). In addition to the formulations described previously, the compounds also can be formulated as a depot preparation. Such long-acting formulations can be administered by implantation (e.g., subcutaneously or intramuscularly) or by intramuscular injection. Thus, for example, the compounds can be formulated with suitable polymeric or hydrophobic materials (for example, as an emulsion in an acceptable oil) or ion exchange resins, or as sparingly soluble derivatives, for example, as a sparingly soluble salt.
In particular, a compound disclosed herein can be administered orally, buccally, or sublingually in the form of tablets containing excipients, such as starch or lactose, or in capsules or ovules, either alone or in admixture with excipients, or in the form of elixirs or suspensions containing flavoring or coloring agents. Such liquid preparations can be prepared with pharmaceutically acceptable additives, such as suspending agents. A compound also can be injected parenterally, for example, intravenously, intramuscularly, subcutaneously, or intracoronarily. For parenteral administration, the compound is best used in the form of a sterile aqueous solution which can contain other substances, for example, salts, or sugar alcohols, such as mannitol, or glucose, to make the solution isotonic with blood.
For veterinary use, a compound disclosed herein is administered as a suitably acceptable formulation in accordance with normal veterinary practice. The veterinarian can readily determine the dosing regimen and route of administration that is most appropriate fora particular animal.
In some embodiments, all the necessary components for the treatment of KRAS-related disorder using a compound as disclosed herein either alone or in combination with another agent or intervention traditionally used for the treatment of such disease may be packaged into a kit. Specifically, the present invention provides a kit for use in the therapeutic intervention of the disease comprising a packaged set of medicaments that include the compound disclosed herein as well as buffers and other components for preparing deliverable forms of said medicaments, and/or devices for delivering such medicaments, and/or any agents that are used in combination therapy with the compound disclosed herein, and/or instructions for the treatment of the disease packaged with the medicaments. The instructions may be fixed in any tangible medium, such as printed paper, or a computer readable magnetic or optical medium, or instructions to reference a remote computer data source such as a world wide web page accessible via the internet.
A “therapeutically effective amount” means an amount effective to treat or to prevent development of, or to alleviate the existing symptoms of, the subject being treated. Determination of the effective amounts is well within the capability of those skilled in the art, especially in light of the detailed disclosure provided herein. Generally, a “therapeutically effective dose” refers to that amount of the compound that results in achieving the desired effect. For example, in one preferred embodiment, a therapeutically effective amount of a compound disclosed herein decreases KRAS activity by at least 5%, compared to control, at least 10%, at least 15%, at least 20%, at least 25%, at least 30%, at least 35%, at least 40/6, at least 45%, at least 50%, at least 55%, at least 60%, at least 65%, at least 70%, at least 75%, at least 80/6, at least 85%, or at least 90%.
The amount of compound administered can be dependent on the subject being treated, on the subject's age, health, sex, and weight, the kind of concurrent treatment (if any), severity of the affliction, the nature of the effect desired, the manner and frequency of treatment, and the judgment of the prescribing physician. The frequency of dosing also can be dependent on pharmacodynamic effects on arterial oxygen pressures. However, the most preferred dosage can be tailored to the individual subject, as is understood and determinable by one of skill in the art, without undue experimentation. This typically involves adjustment of a standard dose (e.g., reduction of the dose if the patient has a low body weight).
While individual needs vary, determination of optimal ranges of effective amounts of the compound is within the skill of the art. For administration to a human in the curative or prophylactic treatment of the conditions and disorders identified herein, for example, typical dosages of the compounds of the present invention can be about 0.05 mg/kg/day to about 50 mg/kg/day, for example at least 0.05 mg/kg, at least 0.08 mg/kg, at least 0.1 mg/kg, at least 0.2 mg/kg, at least 0.3 mg/kg, at least 0.4 mg/kg, or at least 0.5 mg/kg, and preferably 50 mg/kg or less, 40 mg/kg or less, 30 mg/kg or less, 20 mg/kg or less, or 10 mg/kg or less, which can be about 2.5 mg/day (0.5 mg/kg×5 kg) to about 5000 mg/day (50 mg/kg×100 kg), for example. For example, dosages of the compounds can be about 0.1 mg/kg/day to about 50 mg/kg/day, about 0.05 mg/kg/day to about 10 mg/kg/day, about 0.05 mg/kg/day to about 5 mg/kg/day, about 0.05 mg/kg/day to about 3 mg/kg/day, about 0.07 mg/kg/day to about 3 mg/kg/day, about 0.09 mg/kg/day to about 3 mg/kg/day, about 0.05 mg/kg/day to about 0.1 mg/kg/day, about 0.1 mg/kg/day to about 1 mg/kg/day, about 1 mg/kg/day to about 10 mg/kg/day, about 1 mg/kg/day to about 5 mg/kg/day, about 1 mg/kg/day to about 3 mg/kg/day, about 3 mg/day to about 1500 mg/day, about 5 mg/day to about 1000 mg/day, about 10 mg/day to about 750 mg/day, about 3 mg/day to about 350 mg/day, or about 100 mg/day to about 250 mg/day. Such doses may be administered in a single dose or it may be divided into multiple doses.
Methods of Using KRAS G12C InhibitorsThe present disclosure provides a method of inhibiting RAS-mediated cell signaling comprising contacting a cell with an effective amount of one or more compounds disclosed herein. Inhibition of RAS-mediated signal transduction can be assessed and demonstrated by a wide variety of ways known in the art. Non-limiting examples include a showing of (a) a decrease in GTPase activity of RAS; (b) a decrease in GTP binding affinity or an increase in GDP binding affinity; (c) an increase in K off of GTP or a decrease in K off of GDP; (d) a decrease in the levels of signaling transduction molecules downstream in the RAS pathway, such as a decrease in pMEK, pERK, or pAKT levels; and/or (e) a decrease in binding of RAS complex to downstream signaling molecules including but not limited to Raf. Kits and commercially available assays can be utilized for determining one or more of the above.
The disclosure also provides methods of using the compounds or pharmaceutical compositions of the present disclosure to treat disease conditions, including but not limited to conditions implicated by G12C KRAS, HRAS or NRAS mutation (e.g., cancer).
In some embodiments, a method for treatment of cancer is provided, the method comprising administering an effective amount of any of the foregoing pharmaceutical compositions comprising a compound as disclosed herein to a subject in need thereof. In some embodiments, the cancer is mediated by a KRAS, HRAS or NRAS G12C mutation. In various embodiments, the cancer is pancreatic cancer, colorectal cancer or lung cancer. In some embodiments, the cancer is gall bladder cancer, thyroid cancer, and bile duct cancer.
In some embodiments the disclosure provides method of treating a disorder in a subject in need thereof, wherein the said method comprises determining if the subject has a KRAS, HRAS or NRAS G12C mutation and if the subject is determined to have the KRAS, HRAS or NRAS G12C mutation, then administering to the subject a therapeutically effective dose of at least one compound as disclosed herein or a pharmaceutically acceptable salt thereof.
The disclosed compounds inhibit anchorage-independent cell growth and therefore have the potential to inhibit tumor metastasis. Accordingly, another embodiment the disclosure provides a method for inhibiting tumor metastasis, the method comprising administering an effective amount a compound disclosed herein.
KRAS, HRAS or NRAS G12C mutations have also been identified in hematological malignancies (e.g., cancers that affect blood, bone marrow and/or lymph nodes). Accordingly, certain embodiments are directed to administration of a disclosed compounds (e.g., in the form of a pharmaceutical composition) to a patient in need of treatment of a hematological malignancy. Such malignancies include, but are not limited to leukemias and lymphomas. For example, the presently disclosed compounds can be used for treatment of diseases such as Acute lymphoblastic leukemia (ALL), Acute myelogenous leukemia (AML), Chronic lymphocytic leukemia (CLL), small lymphocytic lymphoma (SLL), Chronic myelogenous leukemia (CML), Acute monocytic leukemia (AMoL) and/or other leukemias. In other embodiments, the compounds are useful for treatment of lymphomas such as all subtypes of Hodgkins lymphoma or non-Hodgkins lymphoma. In various embodiments, the compounds are useful for treatment of plasma cell malignancies such as multiple myeloma, mantle cell lymphoma, and Waldenstrom's macroglubunemia.
Determining whether a tumor or cancer comprises a G12C KRAS, HRAS or NRAS mutation can be undertaken by assessing the nucleotide sequence encoding the KRAS. HRAS or NRAS protein, by assessing the amino acid sequence of the KRAS, HRAS or NRAS protein, or by assessing the characteristics of a putative KRAS, HRAS or NRAS mutant protein. The sequence of wild-type human KRAS, HRAS or NRAS is known in the art, (e.g. Accession No. NP203524).
Methods for detecting a mutation in a KRAS, HRAS or NRAS nucleotide sequence are known by those of skill in the art. These methods include, but are not limited to, polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) assays, polymerase chain reaction-single strand conformation polymorphism (PCR-SSCP) assays, real-time PCR assays, PCR sequencing, mutant allele-specific PCR amplification (MASA) assays, direct sequencing, primer extension reactions, electrophoresis, oligonucleotide ligation assays, hybridization assays, TaqMan assays. SNP genotyping assays, high resolution melting assays and microarray analyses. In some embodiments, samples are evaluated for G12C KRAS, HRAS or NRAS mutations by real-time PCR. In real-time PCR, fluorescent probes specific for the KRAS, HRAS or NRAS G12C mutation are used. When a mutation is present, the probe binds and fluorescence is detected. In some embodiments, the KRAS, HRAS or NRAS G12C mutation is identified using a direct sequencing method of specific regions (e.g., exon 2 and/or exon 3) in the KRAS. HRAS or NRAS gene. This technique will identify all possible mutations in the region sequenced.
Methods for detecting a mutation in a KRAS, HRAS or NRAS protein are known by those of skill in the art. These methods include, but are not limited to, detection of a KRAS, HRAS or NRAS mutant using a binding agent (e.g., an antibody) specific for the mutant protein, protein electrophoresis and Western blotting, and direct peptide sequencing.
Methods for determining whether a tumor or cancer comprises a G12C KRAS, HRAS or NRAS mutation can use a variety of samples. In some embodiments, the sample is taken from a subject having a tumor or cancer. In some embodiments, the sample is a fresh tumor/cancer sample. In some embodiments, the sample is a frozen tumor/cancer sample. In some embodiments, the sample is a formalin-fixed paraffin-embedded sample. In some embodiments, the sample is a circulating tumor cell (CTC) sample. In some embodiments, the sample is processed to a cell lysate. In some embodiments, the sample is processed to DNA or RNA.
The disclosure also relates to a method of treating a hyperproliferative disorder in a mammal that comprises administering to said mammal a therapeutically effective amount of a compound as disclosed herein, or a pharmaceutically acceptable salt thereof. In some embodiments, said method relates to the treatment of a subject who suffers from a cancer such as acute myeloid leukemia, cancer in adolescents, adrenocortical carcinoma childhood, AIDS-related cancers (e.g. Lymphoma and Kaposi's Sarcoma), anal cancer, appendix cancer, astrocytomas, atypical teratoid, basal cell carcinoma, bile duct cancer, bladder cancer, bone cancer, brain stem glioma, brain tumor, breast cancer, bronchial tumors, Burkitt lymphoma, carcinoid tumor, atypical teratoid, embryonal tumors, germ cell tumor, primary lymphoma, cervical cancer, childhood cancers, chordoma, cardiac tumors, chronic lymphocytic leukemia (CLL), chronic myelogenous leukemia (CML), chronic myleoproliferative disorders, colon cancer, colorectal cancer, craniopharyngioma, cutaneous T-cell lymphoma, extrahepatic ductal carcinoma in situ (DCIS), embryonal tumors, CNS cancer, endometrial cancer, ependymoma, esophageal cancer, esthesioneuroblastoma, ewing sarcoma, extracranial germ cell tumor, extragonadal germ cell tumor, eye cancer, fibrous histiocytoma of bone, gall bladder cancer, gastric cancer, gastrointestinal carcinoid tumor, gastrointestinal stromal tumors (GIST), germ cell tumor, gestational trophoblastic tumor, hairy cell leukemia, head and neck cancer, heart cancer, liver cancer, Hodgkin lymphoma, hypopharyngeal cancer, intraocular melanoma, islet cell tumors, pancreatic neuroendocrine tumors, kidney cancer, laryngeal cancer, lip and oral cavity cancer, liver cancer, lobular carcinoma in situ (LCIS), lung cancer, lymphoma, metastatic squamous neck cancer with occult primary, midline tract carcinoma, mouth cancer, multiple endocrine neoplasia syndromes, multiple myeloma/plasma cell neoplasm, mycosis fungoides, myelodysplastic syndromes, myelodysplastic/myeloproliferative neoplasms, multiple myeloma, merkel cell carcinoma, malignant mesothelioma, malignant fibrous histiocytoma of bone and osteosarcoma, nasal cavity and paranasal sinus cancer, nasopharyngeal cancer, neuroblastoma, non-hodgkin lymphoma, non-small cell lung cancer (NSCLC), oral cancer, lip and oral cavity cancer, oropharyngeal cancer, ovarian cancer, pancreatic cancer, papillomatosis, paraganglioma, paranasal sinus and nasal cavity cancer, parathyroid cancer, penile cancer, pharyngeal cancer, pleuropulmonary blastoma, primary central nervous system (CNS) lymphoma, prostate cancer, rectal cancer, transitional cell cancer, retinoblastoma, rhabdomyosarcoma, salivary gland cancer, skin cancer, stomach (gastric) cancer, small cell lung cancer, small intestine cancer, soft tissue sarcoma, T-Cell lymphoma, testicular cancer, throat cancer, thymoma and thymic carcinoma, thyroid cancer, transitional cell cancer of the renal pelvis and ureter, trophoblastic tumor, unusual cancers of childhood, urethral cancer, uterine sarcoma, vaginal cancer, vulvar cancer, or viral-induced cancer. In some embodiments, said method relates to the treatment of a non-cancerous hyperproliferative disorder such as benign hyperplasia of the skin (e. g., psoriasis), restenosis, or prostate (e. g., benign prostatic hypertrophy (BPH)).
In some embodiments, the methods for treatment are directed to treating lung cancers, the methods comprise administering an effective amount ofany of the above described compound (or a pharmaceutical composition comprising the same) to a subject in need thereof. In certain embodiments the lung cancer is a non-small cell lung carcinoma (NSCLC), for example adenocarcinoma, squamous-cell lung carcinoma or large-cell lung carcinoma. In some embodiments, the lung cancer is a small cell lung carcinoma. Other lung cancers treatable with the disclosed compounds include, but are not limited to, glandular tumors, carcinoid tumors and undifferentiated carcinomas.
The disclosure further provides methods of modulating a G12C Mutant KRAS, HRAS or NRAS protein activity by contacting the protein with an effective amount of a compound of the disclosure. Modulation can be inhibiting or activating protein activity. In some embodiments, the disclosure provides methods of inhibiting protein activity by contacting the G12C Mutant KRAS, HRAS or NRAS protein with an effective amount of a compound of the disclosure in solution. In some embodiments, the disclosure provides methods of inhibiting the G12C Mutant KRAS, HRAS or NRAS protein activity by contacting a cell, tissue, or organ that expresses the protein of interest. In some embodiments, the disclosure provides methods of inhibiting protein activity in subject including but not limited to rodents and mammal (e.g., human) by administering into the subject an effective amount of a compound of the disclosure. In some embodiments, the percentage modulation exceeds 25%, 30%, 40%, 50%, 60%, 70%, 80%, or 90%. In some embodiments, the percentage of inhibiting exceeds 25%, 30%, 40%, 50%, 60%, 70%, 80%, or 90%.
In some embodiments, the disclosure provides methods of inhibiting KRAS, HRAS or NRAS G12C activity in a cell by contacting said cell with an amount of a compound of the disclosure sufficient to inhibit the activity of KRAS, HRAS or NRAS G12C in said cell. In some embodiments, the disclosure provides methods of inhibiting KRAS, HRAS or NRAS G12C activity in a tissue by contacting said tissue with an amount of a compound of the disclosure sufficient to inhibit the activity of KRAS. HRAS or NRAS G12C in said tissue. In some embodiments, the disclosure provides methods of inhibiting KRAS, HRAS or NRAS G12C activity in an organism by contacting said organism with an amount of a compound of the disclosure sufficient to inhibit the activity of KRAS. HRAS or NRAS G12C in said organism. In some embodiments, the disclosure provides methods of inhibiting KRAS, HRAS or NRAS G12C activity in an animal by contacting said animal with an amount of a compound of the disclosure sufficient to inhibit the activity of KRAS, HRAS or NRAS G12C in said animal. In some embodiments, the disclosure provides methods of inhibiting KRAS, HRAS or NRAS G12C activity in a mammal by contacting said mammal with an amount of a compound of the disclosure sufficient to inhibit the activity of KRAS, HRAS or NRAS G12C in said mammal. In some embodiments, the disclosure provides methods of inhibiting KRAS, HRAS or NRAS G12C activity in a human by contacting said human with an amount of a compound of the disclosure sufficient to inhibit the activity of KRAS, HRAS or NRAS G12C in said human. The present disclosure provides methods of treating a disease mediated by KRAS, HRAS or NRAS G12C activity in a subject in need of such treatment.
Combination Therapy:
The present disclosure also provides methods for combination therapies in which an agent known to modulate other pathways, or other components of the same pathway, or even overlapping sets of target enzymes are used in combination with a compound of the present disclosure, or a pharmaceutically acceptable salt thereof. In one aspect, such therapy includes but is not limited to the combination of one or more compounds of the disclosure with chemotherapeutic agents, therapeutic antibodies, and radiation treatment, to provide a synergistic or additive therapeutic effect.
Many chemotherapeutics are presently known in the art and can be used in combination with the compounds of the disclosure. In some embodiments, the chemotherapeutic is selected from the group consisting of mitotic inhibitors, alkylating agents, anti-metabolites, intercalating antibiotics, growth factor inhibitors, cell cycle inhibitors, enzymes, topoisomerase inhibitors, biological response modifiers, anti-hormones, angiogenesis inhibitors, and anti-androgens. Non-limiting examples are chemotherapeutic agents, cytotoxic agents, and non-peptide small molecules such as Gleevec® (Imatinib Mesylate), Kyprolis® (carfilzomib), Velcadet® (bortezomib), Casodex (bicalutamide), Iress® (gefitinib), Venclexta™ (venetoclax) and Adriamycin™, (docorubicin) as well as a host of chemotherapeutic agents. Non-limiting examples of chemotherapeutic agents include alkylating agents such as thiotepa and cyclosphosphamide (Cytoxan™); alkyl sulfonates such as busulfan, improsulfan and piposulfan; aziridines such as benzodopa, carboquone, meturedopa, and uredopa: ethylenimines and methylamelamines including altretamine, triethylenemelamine, trietylenephosphoramide, triethylenethiophosphaoramide and trimethylolomelamine; nitrogen mustards such as chlorambucil, chlomaphazine, chlorocyclophosphamide, estramustine, ifosfamide, mechlorethamine, mechlorethamine oxide hydrochloride, melphalan, novembichin, phenesterine, prednimustine, trofosfamide, uracil mustard; nitrosureas such as carmustine, chlorozotocin, fotemustine, lomustine, nimustine, ranimustine; antibiotics such as aclacinomysins, actinomycin, authramycin, azaserine, bleomycins, cactinomycin, calicheamicin, carabicin, carminomycin, carzinophilin, Casodex™, chromomycins, dactinomycin, daunorubicin, detorubicin, 6-diazo-5-oxo-L-norleucine, doxorubicin, epirubicin, esorubicin, idarubicin, marcellomycin, mitomycins, mycophenolic acid, nogalamycin, olivomycins, peplomycin, potfiromycin, puromycin, quelamycin, rodorubicin, streptonigrin, streptozocin, tubercidin, ubenimex, zinostatin, zorubicin; anti-metabolites such as methotrexate and 5-fluorouracil (5-FU); folic acid analogues such as denopterin, methotrexate, pteropterin, trimetrexate; purine analogs such as fludarabine, 6-mercaptopurine, thiamiprine, thioguanine; pyrimidine analogs such as ancitabine, azacitidine, 6-azauridine, carmofur, cytarabine, dideoxyuridine, doxifluridine, enocitabine, floxuridine, androgens such as calusterone, dromostanolone propionate, epitiostanol, mepitiostane, testolactone; anti-adrenals such as aminoglutethimide, mitotane, trilostane: folic acid replenisher such as frolinic acid: aceglatone; aldophosphamide glycoside; aminolevulinic acid; amsacrine; bestrabucil; bisantrene; edatraxate; defofamine; demecolcine; diaziquone; elfomithine: elliptinium acetate: etoglucid; gallium nitrate; hydroxyurea: lentinan; lonidamine; mitoguazone; mitoxantrone; mopidamol; nitracrine: pentostatin; phenamet; pirarubicin; podophyllinic acid; 2-ethylhydrazide; procarbazine; PSK; razoxane; sizofiran; spirogermanium; tenuazonic acid; triaziquone; 2,2′,2″-trichlorotriethylamine; urethan; vindesine; dacarbazine; mannomustine; mitobronitol; mitolactol; pipobroman; gacytosine; arabinoside (“Ara-C”); cyclophosphamide; thiotepa; taxanes, e.g. paclitaxel and docetaxel; retinoic acid; esperamicins; capecitabine; and pharmaceutically acceptable salts, acids or derivatives of any of the above.
Also included as suitable chemotherapeutic cell conditioners are anti-hormonal agents that act to regulate or inhibit hormone action on tumors such as anti-estrogens including for example tamoxifen, (Nolvadex™), raloxifene, aromatase inhibiting 4(5)-imidazoles, 4-hydroxytamoxifen, trioxifene, keoxifene, LY 117018, onapristone, and toremifene (Fareston); and anti-androgens such as flutamide, nilutamide, bicalutamide, leuprolide, and goserelin; chlorambucil; gemcitabine; 6-thioguanine; mercaptopurine; methotrexate; platinum analogs such as cisplatin and carboplatin; vinblastine; platinum; etoposide (VP-16); ifosfamide; mitomycin C; mitoxantrone; vincristine; vinorelbine; navelbine; novantrone; teniposide; daunomycin; aminopterin; xeloda; ibandronate; camptothecin-11 (CPT-11); topoisomerase inhibitor RFS 2000; difluoromethylornithine (DMFO).
Where desired, the compounds or pharmaceutical composition of the present disclosure can be used in combination with commonly prescribed anti-cancer drugs such as Herceptin®, Avastin®, Erbitux®, Rituxan®, Taxol®, Arimidex®, Taxotere®, ABVD, AVICINE, Abagovomab, Acridine carboxamide, Adecatumumab, 17-N-Allylamino-17-demethoxygeldanamycin, Alpharadin, Alvocidib, 3-Aminopyridine-2-carboxaldehyde thiosemicarbazone, Amonafide, Anthracenedione, Anti-CD22 immunotoxins, Antineoplastic, Antitumorigenic herbs, Apaziquone, Atiprimod, Azathioprine, Belotecan, Bendamustine, BIBW 2992, Biricodar, Brostallicin, Bryostatin, Buthionine sulfoximine, CBV (chemotherapy), Calyculin, cell-cycle nonspecific antineoplastic agents, Dichloroacetic acid, Discodermolide, Elsamitrucin, Enocitabine, Epothilone, Eribulin, Everolimus, Exatecan, Exisulind, Ferruginol, Forodesine, Fosfestrol, ICE chemotherapy regimen, IT-101, Imexon, Imiquimod, Indolocarbazole, Irofulven, Laniquidar, Larotaxel, Lenalidomide, Lucanthone, Lurtotecan, Mafosfamide, Mitozolomide, Nafoxidine, Nedaplatin, Olaparib, Ortataxel, PAC-1, Pawpaw, Pixantrone, Proteasome inhibitor, Rebeccamycin, Resiquimod, Rubitecan, SN-38, Salinosporamide A, Sapacitabine, Stanford V, Swainsonine, Talaporfin, Tariquidar, Tegafur-uracil, Temodar, Tesetaxel, Triplatin tetranitrate, Tris(2-chloroethyl)amine, Troxacitabine, Uramustine, Vadimezan, Vinflunine, ZD6126 or Zosuquidar.
This disclosure further relates to a method for using the compounds or pharmaceutical compositions provided herein, in combination with radiation therapy for inhibiting abnormal cell growth or treating the hyperproliferative disorder in the mammal. Techniques for administering radiation therapy are known in the art, and these techniques can be used in the combination therapy described herein. The administration of the compound of the disclosure in this combination therapy can be determined as described herein.
Radiation therapy can be administered through one of several methods, or a combination of methods, including without limitation external-beam therapy, internal radiation therapy, implant radiation, stereotactic radiosurgery, systemic radiation therapy, radiotherapy and permanent or temporary interstitial brachytherapy. The term “brachytherapy,” as used herein, refers to radiation therapy delivered by a spatially confined radioactive material inserted into the body at or near a tumor or other proliferative tissue disease site. The term is intended without limitation to include exposure to radioactive isotopes (e.g. At-211, I-131, I-125, Y-90, Re-186, Re-188, Sm-153, Bi-212, P-32, and radioactive isotopes of Lu). Suitable radiation sources for use as a cell conditioner of the present disclosure include both solids and liquids. By way of non-limiting example, the radiation source can be a radionuclide, such as I-125, I-131, Yb-169, Ir-192 as a solid source, I-125 as a solid source, or other radionuclides that emit photons, beta particles, gamma radiation, or other therapeutic rays. The radioactive material can also be a fluid made from any solution of radionuclide(s), e.g., a solution of I-125 or I-131, or a radioactive fluid can be produced using a slurry of a suitable fluid containing small particles of solid radionuclides, such as Au-198, Y-90. Moreover, the radionuclide(s) can be embodied in a gel or radioactive micro spheres.
The compounds or pharmaceutical compositions of the disclosure can be used in combination with an amount of one or more substances selected from anti-angiogenesis agents, signal transduction inhibitors, antiproliferative agents, glycolysis inhibitors, or autophagy inhibitors.
Anti-angiogenesis agents, such as MMP-2 (matrix-metalloproteinase 2) inhibitors, MMP-9 (matrix-metalloproteinase 9) inhibitors, and COX-11 (cyclooxygenase 11) inhibitors, can be used in conjunction with a compound of the disclosure and pharmaceutical compositions described herein. Anti-angiogenesis agents include, for example, rapamycin, temsirolimus (CCI-779), everolimus (RAD001), sorafenib, sunitinib, and bevacizumab. Examples of useful COX-II inhibitors include alecoxib, valdecoxib, and rofecoxib. Examples of useful matrix metalloproteinase inhibitors are described in WO 96/33172 WO 96/27583 European Patent Publication EP0818442, European Patent Publication EP1004578, WO 98/07697, WO 98/03516, WO 98/34918, WO 98/34915, WO 98/33768, WO 98/30566, European Patent Publication 606046, European Patent Publication 931 788, WO 90/05719, WO 99/52910, WO 99/52889, WO 99/29667, WO1999007675, European Patent Publication EP1786785, European Patent Publication No. EP1181017, United States Publication No. US20090012085, United States Publication U.S. Pat. No. 5,863,949, United States Publication U.S. Pat. No. 5,861,510, and European Patent Publication EP0780386, all of which are incorporated herein in their entireties by reference. Preferred MMP-2 and MMP-9 inhibitors are those that have little or no activity inhibiting MMP-1. More preferred, are those that selectively inhibit MMP-2 and/or AMP-9 relative to the other matrix-metalloproteinases (i. e., MAP-1, MMP-3, MMP-4, MMP-5, MMP-6, MMP-7, MMP-8, MMP-10, MMP-11, MMP-12, and MMP-13). Some specific examples of MMP inhibitors useful in the disclosure are AG-3340, RO 32-3555, and RS 13-0830.
The present compounds may also be used in co-therapies with other anti-neoplastic agents, such as acemannan, aclarubicin, aldesleukin, alemtuzumab, alitretinoin, altretamine, amifostine, aminolevulinic acid, amrubicin, amsacrine, anagrelide, anastrozole, ANCER, ancestim, ARGLABIN, arsenic trioxide, BAM 002 (Novelos), bexarotene, bicalutamide, broxuridine, capecitabine, celmoleukin, cetrorelix, cladribine, clotrimazole, cytarabine ocfosfate, DA 3030 (Dong-A), daclizumab, denileukin diftitox, deslorelin, dexrazoxane, dilazep, docetaxel, docosanol, doxercalciferol, doxifluridine, doxorubicin, bromocriptine, carmustine, cytarabine, fluorouracil, HIT diclofenac, interferon alfa, daunorubicin, doxorubicin, tretinoin, edelfosine, edrecolomab, eflornithine, emitefur, epirubicin, epoctin beta, etoposide phosphate, exemestane, exisulind, fadrozole, filgrastim, finasteride, fludarabine phosphate, formestane, fotemustine, gallium nitrate, gemcitabine, gemtuzumab zogamicin, gimeracil/oteracil/tegafur combination, glycopine, goserelin, heptaplatin, human chorionic gonadotropin, human fetal alpha fetoprotein, ibandronic acid, idarubicin, (imiquimod, interferon alfa, interferon alfa, natural, interferon alfa-2, interferon alfa-2a, interferon alfa-2b, interferon alfa-N1, interferon alfa-n3, interferon alfacon-1, interferon alpha, natural, interferon beta, interferon beta-1a, interferon beta-1b, interferon gamma, natural interferon gamma-1a, interferon gamma-1b, interleukin-1 beta, iobenguane, irinotecan, irsogladine, lanreotide. LC 9018 (Yakult), leflunomide, lenograstim, lentinan sulfate, letrozole, leukocyte alpha interferon, leuprorelin, levamisole+fluorouracil, liarozole, lobaplatin, lonidamine, lovastatin, masoprocol, melarsoprol, metoclopramide, mifepristone, miltefosine, mirimostim, mismatched double stranded RNA, mitoguazone, mitolactol, mitoxantrone, molgramostim, nafarelin, naloxone+pentazocine, nartograstim, nedaplatin, nilutamide, noscapine, novel erythropoiesis stimulating protein, NSC 631570 octreotide, oprelvekin, osaterone, oxaliplatin, paclitaxel, pamidronic acid, pegaspargase, peginterferon alfa-2b, pentosan polysulfate sodium, pentostatin, picibanil, pirarubicin, rabbit antithymocyte polyclonal antibody, polyethylene glycol interferon alfa-2a, porfimer sodium, raloxifene, raltitrexed, rasburiembodiment, rhenium Re 186 etidronate, RII retinamide, rituximab, romurtide, samarium (153 Sm) lexidronam, sargramostim, sizofiran, sobuzoxane, sonermin, strontium-89 chloride, suramin, tasonermin, tazarotene, tegafur, temoporfin, temozolomide, teniposide, tetrachlorodecaoxide, thalidomide, thymalfasin, thyrotropin alfa, topotecan, toremifene, tositumomab-iodine 131, trastuzumab, treosulfan, tretinoin, trilostane, trimetrexate, triptorelin, tumor necrosis factor alpha, natural, ubenimex, bladder cancer vaccine, Maruyama vaccine, melanoma lysate vaccine, valrubicin, verteporfin, vinorelbine, VIRULIZIN, zinostatin stimalamer, or zoledronic acid; abarelix; AE 941 (Aetema), ambamustine, antisense oligonucleotide, bcl-2 (Genta), APC 8015 (Dendreon), cetuximab, decitabine, dexaminoglutethimide, diaziquone, EL 532 (Elan), EM 800 (Endorecherche), eniluracil, etanidazole, fenretinide, filgrastim SD01 (Amgen), fulvestrant, galocitabine, gastrin 17 immunogen, HLA-B7 gene therapy (Vical), granulocyte macrophage colony stimulating factor, histamine dihydrochloride, ibritumomab tiuxetan, ilomastat, IM 862 (Cytran), interleukin-2, iproxifene, LDI 200 (Milkhaus), leridistim, lintuzumab, CA 125 MAb (Biomira), cancer MAb (Japan Pharmaceutical Development), HER-2 and Fc MAb (Medarex), idiotypic 105AD7 MAb (CRC Technology), idiotypic CEA MAb (Trilex), LYM-1-iodine 131 MAb (Techniclone), polymorphic epithelial mucin-yttrium 90 MAb (Antisoma), marimastat, menogaril, mitumomab, motexafin gadolinium, MX 6 (Galderma), nelarabine, nolatrexed, P 30 protein, pegvisomant, pemetrexed, porfiromycin, prinomastat, RL 0903 (Shire), rubitecan, satraplatin, sodium phenylacetate, sparfosic acid, SRL 172 (SR Pharma), SU 5416 (SUGEN), TA 077 (Tanabe), tetrathiomolybdate, thaliblastine, thrombopoietin, tin ethyl etiopurpurin, tirapazamine, cancer vaccine (Biomira), melanoma vaccine (New York University), melanoma vaccine (Sloan Kettering Institute), melanoma oncolysate vaccine (New York Medical College), viral melanoma cell lysates vaccine (Royal Newcastle Hospital), or valspodar.
The compounds of the invention may further be used with VEGFR inhibitors. Other compounds described in the following patents and patent applications can be used in combination therapy: U.S. Pat. No. 6,258,812, US 2003/0105091, WO 01/37820, U.S. Pat. No. 6,235,764, WO 01/32651, U.S. Pat. Nos. 6,630,500, 6,515,004, 6,713,485, 5,521,184, 5,770,599, 5,747,498, WO 02/68406, WO 02/66470, WO 02/55501, WO 04/05279, WO 04/07481, WO 04/07458, WO 04/09784, WO 02/59110, WO 99/45009, WO 00/59509, WO 99/61422, U.S. Pat. No. 5,990,141, WO 00/12089, and WO 00/02871.
In some embodiments, the combination comprises a composition of the present invention in combination with at least one anti-angiogenic agent. Agents are inclusive of, but not limited to, in vitro synthetically prepared chemical compositions, antibodies, antigen binding regions, radionuclides, and combinations and conjugates thereof. An agent can be an agonist, antagonist, allosteric modulator, toxin or, more generally, may act to inhibit or stimulate its target (e.g., receptor or enzyme activation or inhibition), and thereby promote cell death or arrest cell growth.
Exemplary anti-angiogenic agents include ERBITUX™ (IMC-C225), KDR (kinase domain receptor) inhibitory agents (e.g., antibodies and antigen binding regions that specifically bind to the kinase domain receptor), anti-VEGF agents (e.g., antibodies or antigen binding regions that specifically bind VEGF, or soluble VEGF receptors or a ligand binding region thereof) such as AVASTIN™ or VEGF-TRAP™, and anti-VEGF receptor agents (e.g., antibodies or antigen binding regions that specifically bind thereto), EGFR inhibitory agents (e.g., antibodies or antigen binding regions that specifically bind thereto) such as Vectibix (panitumumab), IRESSA™ (gefitinib), TARCEVA™ (erlotinib), anti-Ang1 and anti-Ang2 agents (e.g., antibodies or antigen binding regions specifically binding thereto or to their receptors, e.g., Tie2/Tek), and anti-Tie2 kinase inhibitory agents (e.g., antibodies or antigen binding regions that specifically bind thereto). The pharmaceutical compositions of the present invention can also include one or more agents (e.g., antibodies, antigen binding regions, or soluble receptors) that specifically bind and inhibit the activity of growth factors, such as antagonists of hepatocyte growth factor (HGF, also known as Scatter Factor), and antibodies or antigen binding regions that specifically bind its receptor “c-met”.
Other anti-angiogenic agents include Campath, IL-8, B-FGF, Tek antagonists (Ceretti et al., U.S. Publication No. 2003/0162712; U.S. Pat. No. 6,413,932), anti-TWEAK agents (e.g., specifically binding antibodies or antigen binding regions, or soluble TWEAK receptor antagonists; see, Wiley, U.S. Pat. No. 6,727,225), ADAM distintegrin domain to antagonize the binding of integrin to its ligands (Fanslow et al., U.S. Publication No. 2002/0042368), specifically binding anti-eph receptor and/or anti-ephrin antibodies or antigen binding regions (U.S. Pat. Nos. 5,981,245; 5,728,813; 5,969,110; 6,596,852; 6,232,447; 6,057,124 and patent family members thereof), and anti-PDGF-BB antagonists (e.g., specifically binding antibodies or antigen binding regions) as well as antibodies or antigen binding regions specifically binding to PDGF-BB ligands, and PDGFR kinase inhibitory agents (e.g., antibodies or antigen binding regions that specifically bind thereto).
Additional anti-angiogenic/anti-tumor agents include: SD-7784 (Pfizer, USA); cilengitide. (Merck KGaA, Germany, EPO 770622); pegaptanib octasodium, (Gilead Sciences, USA); Alphastatin, (BioActa, UK); M-PGA, (Celgene, USA, U.S. Pat. No. 5,712,291); ilomastat, (Arriva, USA, U.S. Pat. No. 5,892,112); emaxanib, (Pfizer, USA, U.S. Pat. No. 5,792,783); vatalanib, (Novartis, Switzerland); 2-methoxyestradiol, (EntreMed, USA); TLC ELL-12, (Elan, Ireland); anecortave acetate, (Alcon, USA); alpha-D148 Mab, (Amgen, USA); CEP-7055, (Cephalon, USA); anti-Vn Mab, (Crucell, Netherlands) DAC:antiangiogenic, (ConjuChem, Canada); Angiocidin, (InKine Pharmaceutical, USA); KM-2550, (Kyowa Hakko, Japan); SU-0879, (Pfizer, USA); CGP-79787, (Novartis. Switzerland, EP 970070); ARGENT technology, (Ariad, USA); YIGSR-Stealth, (Johnson & Johnson, USA); fibrinogen-E fragment, (BioActa, UK); angiogenesis inhibitor, (Trigen, UK); TBC-1635, (Encysive Pharmaceuticals, USA); SC-236, (Pfizer, USA); ABT-567, (Abbott, USA); Metastatin, (EntreMed, USA); angiogenesis inhibitor, (Tripep, Sweden); maspin, (Sosei, Japan); 2-methoxyestradiol, (Oncology Sciences Corporation, USA); ER-68203-00, (IVAX, USA); Benefin. (Lane Labs, USA); Tz-93, (Tsumura, Japan); TAN-1120, (Takeda, Japan); FR-111142, (Fujisawa, Japan, JP 02233610); platelet factor 4, (RepliGen, USA, EP 407122); vascular endothelial growth factor antagonist, (Borean, Denmark); bevacizumab (pINN), (Genentech. USA); angiogenesis inhibitors, (SUGEN, USA); XL 784, (Exelixis, USA); XL 647, (Exelixis, USA); MAb, alpha5beta3 integrin, second generation. (Applied Molecular Evolution, USA and MedImmune, USA); gene therapy, retinopathy, (Oxford BioMedica, UK); enzastaurin hydrochloride (USAN), (Lilly, USA); CEP 7055, (Cephalon, USA and Sanofi-Synthelabo, France); BC 1, (Genoa Institute of Cancer Research, Italy); angiogenesis inhibitor, (Alchemia, Australia): VEGF antagonist, (Regeneron, USA); rBPI 21 and BPI-derived antiangiogenic, (XOMA, USA); PI 88, (Progen, Australia); cilengitide (pINN), (Merck KGaA, German; Munich Technical University, Germany, Scripps Clinic and Research Foundation, USA); cetuximab (INN), (Aventis, France); AVE 8062, (Ajinomoto, Japan); AS 1404, (Cancer Research Laboratory. New Zealand); SG 292, (Telios, USA); Endostatin, (Boston Childrens Hospital, USA); ATN 161, (Attenuon, USA); ANGIOSTATIN, (Boston Childrens Hospital, USA); 2-methoxyestradiol, (Boston Childrens Hospital, USA); ZD 6474, (AstraZeneca, UK); ZD 6126, (Angiogene Pharmaceuticals, UK); PPI 2458. (Praecis, USA); AZD 9935, (AstraZeneca, UK); AZD 2171, (AstraZeneca, UK); vatalanib (pINN), (Novartis, Switzerland and Schering AG, Germany); tissue factor pathway inhibitors, (EntreMed. USA); pegaptanib (Pinn), (Gilead Sciences, USA); xanthorrhizol, (Yonsei University, South Korea); vaccine, gene-based, VEGF-2, (Scripps Clinic and Research Foundation, USA); SPV5.2, (Supratek, Canada); SDX 103, (University of California at San Diego, USA); PX 478, (ProIX, USA); METASTATIN, (EntreMed, USA); troponin I, (Harvard University, USA); SU 6668, (SUGEN, USA); OXI 4503, (OXiGENE, USA); o-guanidines, (Dimensional Pharmaceuticals. USA); motuporamine C, (British Columbia University, Canada); CDP 791, (Celltech Group, UK): atiprimod (pINN), (GlaxoSmithKline, UK); E 7820, (Eisai, Japan): CYC 381, (Harvard University, USA); AE 941, (Aeterna, Canada); vaccine, angiogenesis, (EntreMed, USA); urokinase plasminogen activator inhibitor. (Dendreon, USA); oglufanide (pINN), (Melmotte, USA); HIF-1alfa inhibitors, (Xenova, UK); CEP 5214, (Cephalon, USA); BAY RES 2622, (Bayer, Germany); Angiocidin, (InKine, USA); A6, (Angstrom, USA); KR 31372, (Korea Research Institute of Chemical Technology, South Korea); GW 2286, (GlaxoSmithKline. UK); EHT 0101, (ExonHit, France); CP 868596, (Pfizer, USA); CP 564959, (OSI, USA); CP 547632, (Pfizer, USA); 786034, (GlaxoSmithKline, UK): KRN 633, (Kirin Brewery, Japan); drug delivery system, intraocular, 2-methoxyestradiol, (EntreMed, USA); anginex, (Maastricht University, Netherlands, and Minnesota University, USA); ABT 510, (Abbott, USA); AAL 993, (Novartis, Switzerland); VEGI, (ProteomTech, USA); tumor necrosis factor-alpha inhibitors, (National Institute on Aging, USA); SU 11248. (Pfizer, USA and SUGEN USA); ABT 518, (Abbott, USA); YH16, (Yantai Rongchang, China); S-3APG, (Boston Childrens Hospital, USA and EntreMed, USA); MAb, KDR, (ImClone Systems, USA); MAb, alpha5 beta1, (Protein Design, USA); KDR kinase inhibitor, (Celltech Group, UK, and Johnson & Johnson, USA); GFB 116, (South Florida University, USA and Yale University. USA); CS 706, (Sankyo, Japan); combretastatin A4 prodrug, (Arizona State University, USA); chondroitinase AC, (IBEX, Canada); BAY RES 2690, (Bayer, Germany); AGM 1470, (Harvard University, USA, Takeda, Japan, and TAP, USA); AG 13925, (Agouron, USA); Tetrathiomolybdate, (University of Michigan, USA); GCS 100, (Wayne State University, USA) CV 247, (Ivy Medical, UK): CKD 732, (Chong Kun Dang, South Korea): MAb, vascular endothelium growth factor, (Xenova, UK); irsogladine (INN), (Nippon Shinyaku, Japan); RG 13577, (Aventis, France): WX 360, (Wilex, Germany); squalamine (pINN), (Genaera, USA); RPI 4610, (Sirna, USA); cancer therapy, (Marinova, Australia); heparanase inhibitors, (InSight, Israel); KL 3106, (Kolon, South Korea); Honokiol, (Emory University. USA); ZK CDK, (Schering AG, Germany); ZK Angio, (Schering AG, Germany); ZK 229561, (Novartis, Switzerland, and Schering AG, Germany); XMP 300, (XOMA, USA); VGA 1102, (Taisho, Japan); VEGF receptor modulators, (Pharmacopeia, USA); VE-cadherin-2 antagonists. (ImClone Systems, USA); Vasostatin, (National Institutes of Health, USA); vaccine, Flk-1, (ImClone Systems, USA); TZ 93, (Tsumura, Japan); TumStatin, (Beth Israel Hospital. USA); truncated soluble FLT 1 (vascular endothelial growth factor receptor 1), (Merck & Co, USA); Tie-2 ligands, (Regeneron, USA); and, thrombospondin I inhibitor, (Allegheny Health, Education and Research Foundation, USA).
Autophagy inhibitors include, but are not limited to chloroquine, 3-methyladenine, hydroxychloroquine (Plaquenil™), bafilomycin A1, 5-amino-4-imidazole carboxamide riboside (AICAR), okadaic acid, autophagy-suppressive algal toxins which inhibit protein phosphatases of type 2A or type 1, analogues of cAMP, and drugs which elevate cAMP levels such as adenosine, LY204002, N6-mercaptopurine riboside, and vinblastine. In addition, antisense or siRNA that inhibits expression of proteins including but not limited to ATG5 (which are implicated in autophagy), may also be used.
Additional pharmaceutically active compounds/agents that can be used in the treatment of cancers and that can be used in combination with one or more compound of the present invention include: epoetin alfa; darbepoetin alfa; panitumumab; pegfilgrastim; palifermin; filgrastim; denosumab; ancestim; AMG 102; AMG 176; AMG 386; AMG 479; AMG 655; AMG 745; AMG 951; and AMG 706, or a pharmaceutically acceptable salt thereof.
In certain embodiments, a composition provided herein is conjointly administered with a chemotherapeutic agent. Suitable chemotherapeutic agents may include, natural products such as vinca alkaloids (e.g., vinblastine, vincristine, and vinorelbine), paclitaxel, epidipodophyllotoxins (e.g., etoposide and teniposide), antibiotics (e.g., dactinomycin (actinomycin D), daunorubicin, doxorubicin, and idarubicin), anthracyclines, mitoxantrone, bleomycins, plicamycin (mithramycin), mitomycin, enzymes (e.g., L-asparaginase which systemically metabolizes L-asparagine and deprives cells which do not have the capacity to synthesize their own asparagine), antiplatelet agents, antiproliferative/antimitotic alkylating agents such as nitrogen mustards (e.g., mechlorethamine, cyclophosphamide and analogs, melphalan, and chlorambucil), ethylenimines and methylmelamines (e.g., hexaamethylmelaamine and thiotepa), CDK inhibitors (e.g., seliciclib, UCN-01, P1446A-05, PD-0332991, dinaciclib, P27-00, AT-7519, RGB286638, and SCH727965), alkyl sulfonates (e.g., busulfan), nitrosoureas (e.g., carmustine (BCNU) and analogs, and streptozocin), trazenes-dacarbazinine (DTIC), antiproliferative/antimitotic antimetabolites such as folic acid analogs (e.g., methotrexate), pyrimidine analogs (e.g., fluorouracil, floxuridine, and cytarabine), purine analogs and related inhibitors (e.g., mercaptopurine, thioguanine, pentostatin and 2-chlorodeoxyadenosine), aromatase inhibitors (e.g., anastrozole, exemestane, and letrozole), and platinum coordination complexes (e.g., cisplatin and carboplatin), procarbazine, hydroxyurea, mitotane, aminoglutethimide, histone deacetylase (HDAC) inhibitors (e.g., trichostatin, sodium butyrate, apicidan, suberoyl anilide hydroamic acid, vorinostat, LBH 589, romidepsin, ACY-1215, and panobinostat), mTor inhibitors (e.g., temsirolimus, everolimus, ridaforolimus, and sirolimus), KSP(Eg5) inhibitors (e.g., Array 520), DNA binding agents (e.g., Zalypsis), PI3K delta inhibitor (e.g., GS-1101 and TGR-1202), PI3K delta and gamma inhibitor (e.g., CAL-130), multi-kinase inhibitor (e.g., TG02 and sorafenib), hormones (e.g., estrogen) and hormone agonists such as leutinizing hormone releasing hormone (LHRH) agonists (e.g., goserelin, leuprolide and triptorelin), BAFF-neutralizing antibody (e.g., LY2127399), IKK inhibitors, p38MAPK inhibitors, anti-IL-6 (e.g., CNTO328), telomerase inhibitors (e.g., GRN 163L), aurora kinase inhibitors (e.g., MLN8237), cell surface monoclonal antibodies (e.g., anti-CD38 (HUMAX-CD38), anti-CS1 (e.g., elotuzumab), HSP90 inhibitors (e.g., 17 AAG and KOS 953), PI3K/Akt inhibitors (e.g., perifosine), Akt inhibitor (e.g., GSK-2141795), PKC inhibitors (e.g., enzastaurin), FTIs (e.g., Zamestra™), anti-CD138 (e.g., BT062), Torc1/2 specific kinase inhibitor (e.g., INK128), kinase inhibitor (e.g., GS-1101), ER/UPR targeting agent (e.g., MKC-3946), cFMS inhibitor (e.g., ARRY-382), JAKI/2 inhibitor (e.g., CYT387), PARP inhibitor (e.g., olaparib and veliparib (ABT-888)), BCL-2 antagonist. Other chemotherapeutic agents may include mechlorethamine, camptothecin, ifosfamide, tamoxifen, raloxifene, gemcitabine, navelbine, sorafenib, or any analog or derivative variant of the foregoing.
The compounds of the present invention may also be used in combination with radiation therapy, hormone therapy, surgery and immunotherapy, which therapies are well known to those skilled in the art.
In certain embodiments, a pharmaceutical composition provided herein is conjointly administered with a steroid. Suitable steroids may include, but are not limited to, 21-acetoxypregnenolone, alclometasone, algestone, amcinonide, beclomethasone, betamethasone, budesonide, chloroprednisone, clobetasol, clocortolone, cloprednol, corticosterone, cortisone, cortivazol, deflazacort, desonide, desoximetasone, dexamethasone, diflorasone, diflucortolone, difuprednate, enoxolone, fluazacort, flucloronide, flumethasone, flunisolide, fluocinolone acetonide, fluocinonide, fluocortin butyl, fluocortolone, fluorometholone, fluperolone acetate, fluprednidene acetate, fluprednisolone, flurandrenolide, fluticasone propionate, formocortal, halcinonide, halobetasol propionate, halometasone, hydrocortisone, loteprednol etabonate, mazipredone, medrysone, meprednisone, methylprednisolone, mometasone furoate, paramethasone, prednicarbate, prednisolone, prednisolone 25-diethylaminoacetate, prednisolone sodium phosphate, prednisone, prednival, prednylidene, rimexolone, tixocortol, triamcinolone, triamcinolone acetonide, triamcinolone benetonide, triamcinolone hexacetonide, and salts and/or derivatives thereof. In a particular embodiment, the compounds of the present invention can also be used in combination with additional pharmaceutically active agents that treat nausea. Examples of agents that can be used to treat nausea include: dronabinol; granisetron; metoclopramide; ondansetron; and prochlorperazine; or a pharmaceutically acceptable salt thereof.
The compounds of the present invention may also be used in combination with an additional pharmaceutically active compound that disrupts or inhibits RAS-RAF-ERK or PI3K-AKT-TOR signaling pathways. In other such combinations, the additional pharmaceutically active compound is a PD-1 and PD-L1 antagonist. The compounds or pharmaceutical compositions of the disclosure can also be used in combination with an amount of one or more substances selected from EGFR inhibitors, MEK inhibitors, PI3K inhibitors, AKT inhibitors, TOR inhibitors, Mcl-1 inhibitors, BCL-2 inhibitors, SHP2 inhibitors, proteasome inhibitors, and immune therapies, including monoclonal antibodies, immunomodulatory imides (IMiDs), anti-PD-1, anti-PDL-1, anti-CTLA4, anti-LAG1, and anti-OX40 agents, GITR agonists, CAR-T cells, and BiTEs.
EGFR inhibitors include, but are not limited to, small molecule antagonists, antibody inhibitors, or specific antisense nucleotide or siRNA. Useful antibody inhibitors of EGFR include cetuximab (Erbitux), panitumumab (Vectibix), zalutumumab, nimotuzumab, and matuzumab. Small molecule antagonists of EGFR include gefitinib, erlotinib (Tarceva), and most recently, lapatinib (TykerB). See e.g., Yan L, et. al., Pharmacogenetics and Pharmacogenomics In Oncology Therapeutic Antibody Development, BioTechniques 2005; 39(4): 565-8, and Paez J G, et. al., EGFR Mutations In Lung Cancer Correlation With Clinical Response To Gefitinib Therapy, Science 2004: 304(5676): 1497-500.
Non-limiting examples of small molecule EGFR inhibitors include any of the EGFR inhibitors described in the following patent publications, and all pharmaceutically acceptable salts and solvates of said EGFR inhibitors: European Patent Application EP 520722, published Dec. 30, 1992: European Patent Application EP 566226, published Oct. 20, 1993: PCT International Publication WO 96/33980, published Oct. 31, 1996; U.S. Pat. No. 5,747,498, issued May 5, 1998; PCT International Publication WO 96/30347, published Oct. 3, 1996; European Patent Application EP 787772, published Aug. 6, 1997; PCT International Publication WO 97/30034, published Aug. 21, 1997: PCT International Publication WO 97/30044, published Aug. 21, 1997; PCT International Publication WO 97/38994, published Oct. 23, 1997: PCT International Publication WO 97/49688, published Dec. 31, 1997; European Patent Application EP 837063, published Apr. 22, 1998; PCT International Publication WO 98/02434, published Jan. 22, 1998; PCT International Publication WO 97/38983, published Oct. 23, 1997; PCT International Publication WO 95/19774, published Jul. 27, 1995; PCT International Publication WO 95/19970, published Jul. 27, 1995; PCT International Publication WO 97/13771, published Apr. 17, 1997; PCT International Publication WO 98/02437, published Jan. 22, 1998; PCT International Publication WO 98/02438, published Jan. 22, 1998; PCT International Publication WO 97/32881, published Sep. 12, 1997: German Application DE 19629652, published Jan. 29, 1998; PCT International Publication WO 98/33798, published Aug. 6, 1998; PCT International Publication WO 97/32880, published Sep. 12, 1997: PCT International Publication WO 97/32880 published Sep. 12, 1997: European Patent Application EP 682027, published Nov. 15, 1995: PCT International Publication WO 97/02266, published January 23, 197; PCT International Publication WO 97/27199, published Jul. 31, 1997; PCT International Publication WO 98/07726, published Feb. 26, 1998; PCT International Publication WO 97/34895, published Sep. 25, 1997: PCT International Publication WO 96/31510′, published Oct. 10, 1996; PCT International Publication WO 98/14449, published Apr. 9, 1998; PCT International Publication WO 98/14450, published Apr. 9, 1998; PCT International Publication WO 98/14451, published Apr. 9, 1998; PCT International Publication WO 95/09847, published Apr. 13, 1995; PCT International Publication WO 97/19065, published May 29, 1997: PCT International Publication WO 98/17662, published Apr. 30, 1998; U.S. Pat. No. 5,789,427, issued Aug. 4, 1998: U.S. Pat. No. 5,650,415, issued Jul. 22, 1997; U.S. Pat. No. 5,656,643, issued Aug. 12, 1997: PCT International Publication WO 99/35146, published Jul. 15, 1999; PCT International Publication WO 99/35132, published Jul. 15, 1999; PCT International Publication WO 99/07701, published Feb. 18, 1999; and PCT International Publication WO 92/20642 published Nov. 26, 1992. Additional non-limiting examples of small molecule EGFR inhibitors include any of the EGFR inhibitors described in Traxler, P., 1998, Exp. Opin. Ther. Patents 8(12):1599-1625.
Antibody-based EGFR inhibitors include any anti-EGFR antibody or antibody fragment that can partially or completely block EGFR activation by its natural ligand. Non-limiting examples of antibody-based EGFR inhibitors include those described in Modjtahedi, H., et al., 1993. Br. J. Cancer 67:247-253; Teramoto, T., et al., 1996, Cancer 77:639-645; Goldstein et al., 1995, Clin. Cancer Res. 1:1311-1318; Huang, S. M., et al., 1999, Cancer Res. 15:59(8):1935-40; and Yang, X., et al., 1999, Cancer Res. 59:1236-1243. Thus, the EGFR inhibitor can be monoclonal antibody Mab E7.6.3 (Yang, 1999 supra), or Mab C225 (ATCC Accession No. HB-8508), or an antibody or antibody fragment having the binding specificity thereof.
MEK inhibitors include, but are not limited to, CI-1040, AZD6244, PD318088, PD98059, PD334581, RDEA119, ARRY-142886, ARRY-438162, and PD-325901.
PI3K inhibitors include, but are not limited to, wortmannin, 17-hydroxywortmannin analogs described in WO 06/044453, 4-[2-(1H-Indazol-4-yl)-6-[[4-(methylsulfonyl)piperazin-1-yl]methyl]thieno[3,2-d]pyrimidin-4-yl]morpholine (also known as GDC 0941 and described in PCT Publication Nos. WO 09/036,082 and WO 09/055,730), 2-Methyl-2-[4-[3-methyl-2-oxo-8-(quinolin-3-yl)-2,3-dihydroimidazo[4,5-c]quinolin-1-yl]phenyl]propionitrile (also known as BEZ 235 or NVP-BEZ 235, and described in PCT Publication No. WO 06/122806), (S)-1-(4-((2-(2-aminopyrimidin-5-yl)-7-methyl-4-morpholinothieno[3,2-d]pyrimidin-6-yl)methyl)piperazin-1-yl)-2-hydroxypropan-1-one (described in PCT Publication No. WO 2008/070740), LY294002 (2-(4-Morpholinyl)-8-phenyl-4H-1-benzopyran-4-one available from Axon Medchem), PI 103 hydrochloride (3-[4-(4-morpholinylpyrido-[3′,2′:4,5]furo[3,2-d]pyrimidin-2-yl]phenol hydrochloride available from Axon Medchem), PIK 75 (N′-[(1E)(6-bromoimidazo[1,2-a]pyridin-3-yl)methylene]-N,2-dimethyl-5-nitrobenzenesulfono-hydrazide hydrochloride available from Axon Medchem), PIK 90 (N-(7,8-dimethoxy-2,3-dihydroimidazo[1,2-c]quinazolin-5-yl)-nicotinamide available from Axon Medchem), GDC-0941 bismesylate (2-(1H-Indazol-4-yl)-6-(4-methanesulfonyl-piperazin-1-ylmethyl)-4-morpholin-4-yl-thieno[3,2-d]pyrimidine bismesylate available from Axon Medchem), AS-252424 (5-[1-[5-(4-Fluoro-2-hydroxy-phenyl)-furan-2-yl]-meth-(Z)-ylidene]-thiazolidine-2,4-dione available from Axon Medchem), and TGX-221 (7-Methyl-2-(4-morpholinyl)-9-[1-(phenylamino)ethyl]-4H-pyrido-[1,2-a]pyrimidin-4-one available from Axon Medchem), XL-765, and XL-147. Other PI3K inhibitors include demethoxyviridin, perifosine, CAL101, PX-866, BEZ235, SF1126, INKI117, IPI-145, BKM120, XL147, XL765, Palomid 529, GSK1059615, ZSTK474, PWT33597, IC87114, TG100-115, CAL263, PI-103, GNE-477, CUDC-907, and AEZS-136.
AKT inhibitors include, but are not limited to, Akt-1-1 (inhibits Akt1) (Barnett et al. (2005) Biochem. J., 385 (Pt. 2), 399408); Akt-1-1,2 (inhibits Aki and 2) (Barnett et al. (2005) Biochem. J. 385 (Pt. 2), 399408); API-59CJ-Omc (e.g., Jin et al. (2004) Br. J. Cancer 91, 1808-12); 1-H-imidazo[4,5-c]pyridinyl compounds (e.g., WO05011700); indole-3-carbinol and derivatives thereof (e.g., U.S. Pat. No. 6,656,963; Sarkar and Li (2004) J Nutr. 134 (12 Suppl), 3493S-3498S); perifosine (e.g., interferes with Akt membrane localization; Dasmahapatra et al. (2004) Clin. Cancer Res. 10(15), 5242-52, 2004); phosphatidylinositol ether lipid analogues (e.g., Gills and Dennis (2004) Expert. Opin. Investig. Drugs 13, 787-97); and triciribine (TCN or API-2 or NCI identifier: NSC 154020; Yang et al. (2004) Cancer Res. 64, 4394-9).
TOR inhibitors include, but are not limited to, AP-23573, CCI-779, everolimus, RAD-001, rapamycin, temsirolimus, ATP-competitive TORC1/TORC2 inhibitors, including PI-103, PP242, PP30 and Torin 1. Other TOR inhibitors in FKBP12 enhancer; rapamycins and derivatives thereof, including: CCI-779 (temsirolimus), RAD001 (Everolimus; WO 9409010) and AP23573; rapalogs, e.g. as disclosed in WO 98/02441 and WO 01/14387, e.g. AP23573, AP23464, or AP23841; 40-(2-hydroxyethyl)rapamycin, 40-[3-hydroxy(hydroxymethyl)methylpropanoate]-rapamycin (also called CCI-779), 40-epi-(tetrazolyt)-rapamycin (also called ABT578), 32-deoxorapamycin, 16-pentynyloxy-32(S)-dihydrorapanycin, and other derivatives disclosed in WO 05005434; derivatives disclosed in U.S. Pat. No. 5,258,389, WO 94/090101, WO 92/05179, U.S. Pat. Nos. 5,118,677, 5,118,678, 5,100,883. U.S. Pat. Nos. 5,151,413, 5,120,842, WO 93/111130, WO 94/02136, WO 94/02485, WO 95/14023, WO 94/02136, WO 95/16691, WO 96/41807, WO 96/41807 and U.S. Pat. No. 5,256,790: phosphorus-containing rapamycin derivatives (e.g., WO 05016252); 4H-1-benzopyran-4-one derivatives (e.g., U.S. Provisional Application No. 60/528,340).
MCI-1 inhibitors include, but are not limited to, AMG-176, AMG-397, MIK665, and S63845. The myeloid cell leukemia-1 (MCL-1) protein is one of the key anti-apoptotic members of the B-cell lymphoma-2 (BCL-2) protein family. Over-expression of MCL-1 has been closely related to tumor progression as well as to resistance, not only to traditional chemotherapies but also to targeted therapeutics including BCL-2 inhibitors such as ABT-263.
SHP inhibitors include, but are not limited to, SHP099.
Proteasome inhibitors include, but are not limited to, Kyprolis® (carfilzomib), Velcade® (bortezomib), and oprozomib.
Immune therapies include, but are not limited to, anti-PD-1 agents, anti-PDL-1 agents, anti-CTLA-4 agents, anti-LAG1 agents, and anti-OX40 agents.
Monoclonal antibodies include, but are not limited to, Darzalex® (daratumumab), Herceptin® (trastuzumab), Avastin® (bevacizumab), Rituxan® (rituximab), Lucentis® (ranibizumab), and Eylea® (aflibercept).
Immunomodulatory agents (IMiDs) are a class of immunomodulatory drugs (drugs that adjust immune responses) containing an imide group. The IMiD class includes thalidomide and its analogues (lenalidomide, pomalidomide, and apremilast).
Exemplary anti-PD-1 antibodies and methods for their use are described by Goldberg et al., Blood 110(1):186-192 (2007). Thompson et al., Clin. Cancer Res. 13(6):1757-1761 (2007), and Korman et al., International Application No. PCT/JP2006/309606 (publication no. WO 2006/121168 A1), each of which are expressly incorporated by reference herein, include: Keytruda® (pembrolizumab), Opdivo® (niolumab). Yervoy™ (ipilimumab) or Tremelimumab (to CTLA-4), galiximab (to B7.1), BMS-936558 (to PD-1), MK-3475 (to PD-1), AMP224 (to B7DC), BMS-936559 (to B7-H1), MPDL3280A (to B7-H1), MEDI-570 (to ICOS), AMG557 (to B7H2), MGA271 (to B7H3), IMP321 (to LAG-3), BMS-663513 (to CD137), PF-05082566 (to CD137), CDX-1127 (to CD27), anti-OX40 (Providence Health Services), huMAbOX40L (to OX40L), Atacicept (to TACI), CP-870893 (to CD40), Lucatumumab (to CD40), Dacetuzumab (to CD40), Muromonab-CD3 (to CD3), Ipilumumab (to CTLA-4). Immune therapies also include genetically engineered T-cells (e.g., CAR-T cells) and bispecific antibodies (e.g., BiTEs).
In a particular embodiment, the compounds of the present invention are used in combination with an anti-PD-1 antibody, such as AMG 404. In a specific embodiment, the anti-PD-1 antibody (or antigen binding antibody fragment thereof) comprises 1, 2, 3, 4, 5, or all 6 the CDR amino acid sequences of SEQ ID NOs: 1-6 (representing HC CDR1, HC CDR2, HC CDR3, LC CDR1, LC CDR2, and LC CDR3, in that order). In specific embodiments, the anti-PD-1 antibody (or antigen binding antibody fragment thereof) comprises all 6 of the CDR amino acid sequences of SEQ ID NOs: 1-6. In other embodiments, the anti-PD-1 antibody (or antigen binding antibody fragment thereof) comprises (a) the heavy chain variable region amino acid sequence in SEQ ID NO: 7, or a variant sequence thereof which differs by only one or two amino acids or which has at least or about 70% sequence identity, or (b) the light chain variable region amino acid sequence in SEQ ID NO: 8 or a variant sequence thereof which differs by only one or two amino acids or which has at least or about 70% sequence identity. In an exemplary embodiment, the anti-PD-1 antibody (or antigen binding antibody fragment thereof) comprises the heavy chain variable region amino acid sequence in SEQ ID NO: 7 and the light chain variable region amino acid sequence in SEQ ID NO: 8. In other embodiments, the anti-PD-1 antibody (or antigen binding antibody fragment thereof) comprises (a) the heavy chain amino acid sequence of SEQ ID NO: 9 or a variant sequence thereof which differs by only one or two amino acids or which has at least or about 70% sequence identity; or (b) the light chain amino acid sequence of SEQ ID NO: 10 or a variant sequence thereof which differs by only one or two amino acids or which has at least or about 70% sequence identity. In an exemplary embodiment, the anti-PD-1 antibody (or antigen binding antibody fragment thereof) comprises the heavy chain amino acid sequence of SEQ ID NO: 9 and the light chain amino acid sequence of SEQ ID NO: 10.
The present disclosure further provides nucleic acid sequences encoding the anti-PD-1 antibody (or an antigen binding portion thereof). In exemplary aspects, the antibody comprises 1, 2, 3, 4, 5, or all 6 CDRs encoded by the nucleic acid(s) of SEQ ID NOs: 11-16 (representing HC CDR1, HC CDR2, HC CDR3, LC CDR1, LC CDR2, and LC CDR3, in that order). In another exemplary aspect, the antibody comprises all 6 CDRs encoded by the nucleic acids of SEQ ID NOs: 11-16. In some embodiments, the anti-PD-1 antibody (or an antigen binding portion thereof) comprises (a) a heavy chain variable region encoded by SEQ ID NO: 17 or a variant sequence thereof which differs by only 1, 2, 3, 4, 5, or 6 nucleic acids or which has at least or about 70%, 85%, 90%, or 95% sequence identity, or (b) a light chain variable region encoded by SEQ ID NO: 18 or a variant sequence thereof which differs by only 1, 2, 3, 4, 5, or 6 nucleic acids or which has at least or about 70%, 85%, 90%, or 95% sequence identity. In an exemplary embodiment, the anti-PD-1 antibody (or an antigen binding portion thereof) comprises a heavy chain variable region encoded by SEQ ID NO: 17 and a light chain variable region encoded by SEQ ID NO: 18. In other embodiments, the anti-PD-1 antibody (or an antigen binding portion thereof) comprises (a) a heavy chain encoded by SEQ ID NO: 19 or a variant sequence thereof which differs by only 1, 2, 3, 4, 5, or 6 nucleic acids or which has at least or about 70%, 85%, 90% or 95% sequence identity, or (b) a light chain encoded by SEQ ID NO: 20 or a variant sequence thereof which differs by only 1, 2, 3, 4, 5, or 6 nucleic acids or which has at least or about 70%, 85%, 90%, or 95% sequence identity. In an exemplary embodiment, the anti-PD-1 antibody (or an antigen binding portion thereof) comprises a heavy chain encoded by SEQ ID NO: 19 and a light chain encoded by SEQ ID NO: 20.
GITR agonists include, but are not limited to, GITR fusion proteins and anti-GITR antibodies (e.g., bivalent anti-GITR antibodies), such as, a GITR fusion protein described in U.S. Pat. No. 6,111,090box.c, European Patent No.: 090505B1, U.S. Pat. No. 8,586,023, PCT Publication Nos.: WO 2010/003118 and 2011/090754, or an anti-GITR antibody described, e.g., in U.S. Pat. No. 7,025,962, European Patent No.: 1947183B1, U.S. Pat. Nos. 7,812,135, 8,388,967, 8,591,886, European Patent No.: EP 1866339, PCT Publication No.: WO 2011/028683, PCT Publication No.: WO 2013/039954, PCT Publication No.: WO2005/007190, PCT Publication No.: WO 2007/133822, PCT Publication No.: WO2005/055808, PCT Publication No.: WO 99/401%. PCT Publication No.: WO 2001/03720, PCT Publication No.: WO99/20758, PCT Publication No.: WO2006/083289, PCT Publication No.: WO 2005/115451, U.S. Pat. No. 7,618,632, and PCT Publication No.: WO 2011/051726.
The compounds described herein can be used in combination with the agents disclosed herein or other suitable agents, depending on the condition being treated. Hence, in some embodiments the one or more compounds of the disclosure will be co-administered with other agents as described above. When used in combination therapy, the compounds described herein are administered with the second agent simultaneously or separately. This administration in combination can include simultaneous administration of the two agents in the same dosage form, simultaneous administration in separate dosage forms, and separate administration. That is, a compound described herein and any of the agents described above can be formulated together in the same dosage form and administered simultaneously. Alternatively, a compound of the disclosure and any of the agents described above can be simultaneously administered, wherein both the agents are present in separate formulations. In another alternative, a compound of the present disclosure can be administered just followed by and any of the agents described above, or vice versa. In some embodiments of the separate administration protocol, a compound of the disclosure and any of the agents described above are administered a few minutes apart, or a few hours apart, or a few days apart.
As one aspect of the present invention contemplates the treatment of the disease/conditions with a combination of pharmaceutically active compounds that may be administered separately, the invention further relates to combining separate pharmaceutical compositions in kit form. The kit comprises two separate pharmaceutical compositions: a compound of the present invention, and a second pharmaceutical compound. The kit comprises a container for containing the separate compositions such as a divided bottle or a divided foil packet. Additional examples of containers include syringes, boxes, and bags. In some embodiments, the kit comprises directions for the use of the separate components. The kit form is particularly advantageous when the separate components are preferably administered in different dosage forms (e.g., oral and parenteral), are administered at different dosage intervals, or when titration of the individual components of the combination is desired by the prescribing health care professional.
EXAMPLESSection 1—Methods and Method Examples
Method 55
6-Chloro-7-(2-fluoro-6-hydroxyphenyl)-1-(3-methyl-5-(2-propanyl)-1,2-oxazol-4-yl)-4-((2S)-2-methyl-4-(2-propenoyl)-1-piperazinyl)pyrido[2,3-d]pyrimidin-2(1H)-oneTo a grey heterogeneous mixture of 2,5,6-trichloronicotinamide (Intermediate P, 2.5 g, 11 mmol) in THF (22 mL) was added oxalyl chloride, 2 M solution in DCM (5.8 mL, 11.6 mmol) at rt. The resulting yellow heterogeneous mixture was stirred and heated at 65° C. After 4 h, the mixture was cooled to 0° C. and treated with a white suspension of 5-isopropyl-3-methylisoxazol-4-amine hydrochloride (1.96 g, 11.08 mmol, Enamine, Monmouth Junction, NJ, USA) and DIPEA (3.9 mL, 22.2 mmol) in THF (5 mL) and the mixture was stirred at 0° C. After 5 min, the cooling bath was removed and the mixture was stirred at rt for 2 h. The mixture was concentrated in vacuo to give the crude product as yellow syrup. The residue was partitioned between EtOAc (100 mL) and saturated NaHCO3 (100 mL) and the organic extract was washed with brine (1×100 mL) and dried over Na2SO4. The solution was filtered and concentrated in vacuo and the resulting residue was suspended in acetonitrile (20 mL), filtered and the solid was washed with acetonitrile (20 mL), and dried to give 2,5,6-trichloro-N-((5-isopropyl-3-methylisoxazol-4-yl)carbamoyl)nicotinamide (2.84 g, 7.26 mmol, 65.5% yield) as an off-white solid. 1H NMR (400 MHz, DMSO-d6) δ 11.31 (br s, 1H), 9.22 (br s, 1H), 8.62 (s, 1H), 3.02-3.16 (m, 1H), 2.11 (s, 3H), 1.23 (d, J=7.0 Hz, 6H). m/z (ESI, +ve ion): 390.8 (M+H)+.
Step 2: 6,7-Dichloro-1-(5-isopropyl-3-methylisoxazol-4-yl)pyrido[2,3-d]pyrimidine-2,4(1H,3H)-dioneTo a cooled mixture of 2,5,6-trichloro-N-((5-isopropyl-3-methylisoxazol-4-yl)carbamoyl)nicotinamide (2.84 g, 7.24 mmol) in THF (24 mL) at 0° C. was added dropwise KHMDS, 1 M solution in THF (14.5 mL, 14.5 mmol) and the mixture was stirred at 0° C. After 30 min, the cooling bath was removed and the reddish brown homogeneous mixture was stirred at rt for 1 h. The mixture was quenched with satd, ammonium chloride (50 mL) and brine (50 mL) and extracted with EtOAc (2×50 mL). The organic extract was dried over Na2SO4 and the solution was filtered and concentrated in vacuo. The crude product was purified by silica gel chromatography (eluent: 0-50% EtOAc/heptane) to provide 6,7-dichloro-1-(5-isopropyl-3-methylisoxazol-4-yl)pyrido[2,3-d]pyrimidine-2,4(1H,3H)-dione (1.68 g, 66% yield). This material was used without further purification in the following step. 1H NMR (400 MHz, DMSO-d6) δ 12.24 (s, 1H), 8.56 (s, 1H), 3.00-3.13 (m, 1H), 2.04 (s, 3H), 1.15 (dd, J=6.9, 4.3 Hz, 6H). m/z (ESI, +ve ion): 355.0 (M+H)+.
Step 3: tert-Butyl (S)-4-(6,7-dichloro-1-(5-isopropyl-3-methylisoxazol-4-yl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-3-methylpiperazine-1-carboxylateA solution of 6,7-dichloro-1-(5-isopropyl-3-methylisoxazol-4-yl)pyrido[2,3-d]pyrimidine-2,4(1H,3H)-dione (1.69 g, 4.74 mmol), DIPEA (1.1 mL, 6.2 mmol), and phosphoryl trichloride (0.53 mL, 5.7 mmol) in acetonitrile (2 mL) was stirred at 80° C. for 1 h. The reaction mixture cooled to rt, DIPEA (3.4 mL, 19.4 mmol) and tert-butyl (S)-3-methylpiperazine-1-carboxylate (1.04 g, 5.21 mmol) were added and the reaction was stirred at rt for 30 min. The mixture was poured into cold, satd. NaHCO3 (5 mL) and stirred vigorously for 10 min. The mixture was partitioned between EtOAc (100 mL), and satd. NaHCO3 (75 mL), the organic layer was washed with satd. NaHCO3 (75 mL). The organic extract was dried over Na2SO4, filtered and concentrated in vacuo. The crude product was purified by silica gel chromatography (eluent: 0-5% MeOH/DCM) to provide tert-butyl (S)-4-(6,7-dichloro-1-(5-isopropyl-3-methylisoxazol-4-yl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-3-methylpiperazine-1-carboxylate (2.5 g, 98% yield). m/z (ESI, +ve ion): 537.0 (M+H)+.
Step 4: tert-Butyl (3S)-4-(6-chloro-7-(2-fluoro-6-hydroxyphenyl)-1-(5-isopropyl-3-methylisoxazol-4-yl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-3-methylpiperazine-1-carboxylateA mixture of tert-butyl (S)-4-(6,7-dichloro-1-(5-isopropyl-3-methylisoxazol-4-yl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-3-methylpiperazine-1-carboxylate (0.6 g, 1.1 mmol), (2-fluoro-5-hydroxyphenyl)boronic acid (261 mg, 1.68 mmol), Pd(PPh3)4 (0.13 g, 0.11 mmol) and sodium carbonate (0.36 g, 3.35 mmol) was purged with N2 followed by the addition of 1,4-dioxane (12 mL) and water (3 mL). The mixture was heated at 80° C. for 1 h then quenched with sat. NaHCO3, extracted with EtOAc, dried over Na2SO4, filtered and concentrated in vacuo. The crude product was purified by silica gel chromatography (eluent: 0-5% MeOH/DCM) to provide tert-butyl (3S)-4-(6-chloro-7-(2-fluoro-6-hydroxyphenyl)-1-(5-isopropyl-3-methylisoxazol-4-yl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-3-methylpiperazine-1-carboxylate (0.22 g, 0.37 mmol, 33% yield) with some traces of ether byproduct. m/z (ESI, +ve ion): 613.0 (M+H)+.
Step 5: 6-Chloro-7-(2-fluoro-6-hydroxyphenyl)-1-(3-methyl-5-(2-propanyl)-1,2-oxazol-4-yl)-4-((2S)-2-methyl-4-(2-propenoyl)-1-piperazinyl)pyrido[2,3-d]pyrimidin-2(1H)-oneTo a solution of tert-butyl (3S)-4-(6-chloro-7-(2-fluoro-6-hydroxyphenyl)-1-(5-isopropyl-3-methylisoxazol-4-yl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-3-methylpiperazine-1-carboxylate (0.22 g, 0.37 mmol) in DCM (5 mL) at rt was added TFA (5 mL, 64.9 mmol) and the mixture was stirred at rt for 30 min. The mixture was concentrated in vacuo to afford 6-chloro-7-(2-fluoro-6-hydroxyphenyl)-1-(5-isopropyl-3-methylisoxazol-4-yl)-4-((S)-2-methylpiperazin-1-yl)pyrido[2,3-d]pyrimidin-2(1H)-one. The crude product was dissolved in DCM (15 mL), treated with DIPEA (0.26 mL, 1.5 mmol) and a solution of acryloyl chloride (0.021 mL, 0.26 mmol) in DCM (1 mL) in small portions. After 30 min. the mixture was diluted with DCM, washed with satd. NaHCO3, with satd. ammonium chloride. The organic extract was dried over Na2SO4, filtered and concentrated in vacuo. The crude product was purified by silica gel chromatography (eluent: 0-5% MeOH/DCM) to provide 6-chloro-7-(2-fluoro-6-hydroxyphenyl)-1-(3-methyl-5-(2-propanyl)-1,2-oxazol-4-yl)-4-((2S)-2-methyl-4-(2-propenoyl)-1-piperazinyl)pyrido[2,3-d]pyrimidin-2(1H)-one (0.16 g, 0.14 mmol, 37.4% yield). 1H NMR (400 MHz, DMSO-d6) δ 10.18 (br s, 1H), 8.40 (br d, J=13.1 Hz, 1H), 7.25-7.32 (m, 1H), 6.79-6.91 (m, 1H), 6.68-6.79 (m, 2H), 6.20 (br d, J=16.6 Hz, 1H), 5.74-5.79 (m, 1H), 4.93 (br d, J=27.8 Hz, 1H), 3.97-4.46 (m, 3H), 3.36-3.88 (m, 2H), 2.98-3.28 (m, 1H), 2.85-2.97 (m, 1H), 1.92 (br d, J=6.0 Hz, 3H), 1.33 (dd, J=12.6, 6.6 Hz, 3H), 1.10 (d, J=6.8 Hz, 3H), 1.05 (dd, J=6.9, 2.6 Hz, 3H). 19F NMR (376 MHz, DMSO-d6) δ −115.73 (br dd, J=82.4, 10.4 Hz, 1F). m/z (ESI, +ve ion): 567.2 (M+H)+.
Method 69
A 25-mL round-bottomed flask was charged with (S)-tert-butyl 4-(6,7-dichloro-1-(2-isopropylphenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-3-methylpiperazine-1-carboxylate (Intermediate 61B, 45 mg, 0.085 mmol) and piperidine (0.1 mL, 1.01 mmol, Spectrum Chemicals & Laboratory Products, Gardena, CA, USA). The reaction mixture was stirred and heated at 80° C. for 16 h. The reaction mixture was concentrated in vacuo to give crude (S)-tert-butyl 4-(6-chloro-1-(2-isopropylphenyl)-2-oxo-7-(piperidin-1-yl)-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-3-methylpiperazine-1-carboxylate (49 mg) as a yellow solid. m/z (ESI, +ve ion): 581.3 (M+H)+. The crude yellow solid was used in next step without purification.
Step 2: 6-Chloro-4-((2S)-2-methyl-4-(2-propenoyl)-1-piperazinyl)-7-(1-piperidinyl)-1-(2-(2-propanyl)phenyl)pyrido[2,3-d]pyrimidin-2(1H)-oneTo a solution of (S)-tert-butyl 4-(6-chloro-1-(2-isopropylphenyl)-2-oxo-7-(piperidin-1-yl)-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-3-methylpiperazine-1-carboxylate (49 mg, 0.084 mmol) in DCM (1 mL) was treated with TFA (1 mL) at it and stirred for 15 min. The reaction was concentrated in vacuo to afford (S)-6-chloro-1-(2-isopropylphenyl)-4-(2-methylpiperazin-1-yl)-7-(piperidin-1-yl)pyrido[2,3-d]pyrimidin-2(H)-one. m/z (ESI, +ve ion): 481.3 (M+H)+.
A mixture of (S)-6-chloro-1-(2-isopropylphenyl)-4-(2-methylpiperazin-1-yl)-7-(piperidin-1-yl)pyrido[2,3-d]pyrimidin-2(1H)-one and DIPEA (0.07 mL, 0.42 mmol) in DCM (1.0 mL) was added acryloyl chloride (0.26 M in DCM, 0.33 mL, 0.084 mmol) at 0° C. and stirred for 40 min at 0° C. The resulting mixture was concentrated in vacuo. The crude product was purified by silica gel chromatography (eluent: 0-50% of EtOAc/EtOH(3:1)/heptane) to provide pure (S)-4-(4-acryloyl-2-methylpiperazin-1-yl)-6-chloro-1-(2-isopropylphenyl)-7-(piperidin-1-yl)pyrido[2,3-d]pyrimidin-2(1H)-one (28 mg, 0.053 mmol, 62.5% yield) as a light-yellow solid. 1H NMR (400 MHz, DMSO-d6) δ 7.85-8.03 (m, 1H), 7.42-7.50 (m, 1H), 7.34-7.42 (m, 1H), 7.26 (t, J=7.5 Hz, 1H), 7.05 (d, J=7.7 Hz, 1H), 6.74-6.92 (m, 1H), 6.19 (br dd, J=17.5, 4.5 Hz, 1H), 5.71-5.78 (m, 1H), 4.68-4.84 (m, 1H), 4.21-4.45 (m, 1H), 3.93-4.19 (m, 2H), 3.35-3.66 (m, 2H), 3.25 (br s, 4H), 2.89-3.19 (m, 1H), 2.45-2.48 (m, 1H), 1.34 (br d, J=3.9 Hz, 3H), 1.20-1.29 (m, 6H), 1.08 (d, J=6.8 Hz, 3H), 0.98 (br d, J=6.8 Hz, 3H). m/z (ESI, +ve ion): 536.3 (M+H)+.
Method 72
A mixture of atropisomers 7-chloro-6-fluoro-1-(2-isopropyl-4-methylpyridin-3-yl)pyrido[2,3-d]pyrimidine-2,4(1H,3H)-dione (Example 41, Step 3,648 g) was purified by SFC (AD, 150×50 mm, 5 μm, 50% MeOH/CO2, 180 g/min, 102 bar) to obtain two peaks: Peak 1 (P isomer, 230.6 g, >99% ee) and Peak 2 (M isomer, 227.8 g, 97.1% ee. Intermediate 72A).
Step 2: (M)-4,7-Dichloro-6-fluoro-1-(2-isopropyl-4-methylpyridin-3-yl)pyrido[2,3-d]pyrimidin-2(1H)-oneTo a suspension of (M)-7-chloro-6-fluoro-1-(2-isopropyl-4-methylpyridin-3-yl)pyrido[2,3<d]pyrimidine-2,4(1H,3H)-dione (Intermediate 72A, 2.51 g, 7.19 mmol) in a mixture of acetonitrile (11 mL) and DIPEA (1.9 mL, 11 mmol) was added phosphorous oxychloride (0.87 mL, 9.3 mmol). The mixture was heated at 80° C. for 90 min and then concentrated in vacuo. The crude residue was used without further purification in the following step. m/z (ESI, +ve ion): 367.0 (M+H)+.
Step 3: (M,S)-tert-Butyl 4-(7-chloro-6-fluoro-1-(2-isopropyl-4-methylpyridin-3-yl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-3-methylpiperazine-1-carboxylate (Intermediate 65A)A solution of (M)-4,7-dichloro-6-fluoro-1-(2-isopropyl-4-methylpyridin-3-yl)pyrido[2,3-d]pyrimidin-2(1H)-one (2.64 g, 7.19 mmol) in acetonitrile (11 mL) was cooled in an ice-water bath to 0° C. DIPEA (3.8 mL, 22 mmol) was added, followed by (3S)-1-(tert-butoxycarbonyl)-3-methylpiperazine (1.8 g, 8.7 mmol, Ark Pharm, Inc., Libertyville, IL, USA). The mixture was allowed to warm to rt and stir for 18 h. The mixture was quenched with satd. NaHCO3 (100 mL). The mixture was diluted with EtOAc (175 mL), and water (75 mL). The aqueous layer was washed with EtOAc (2×100 mL). The combined organic phases were dried over MgSO4 and then concentrated in vacuo. The crude product was purified by silica gel chromatography (eluent: 10-50% EtOAc-EtOH (3:1)/heptane) to provide (M,S)-tert-butyl 4-(7-chloro-6-fluoro-1-(2-isopropyl-4-methylpyridin-3-yl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-3-methylpiperazine-1-carboxylate (Intermediate 65A). m/z (ESI, +ve ion): 530.9 (M+H)+.
Step 4: (M,S)-4-(4-Acryloyl-2-methylpiperazin-1-yl)-7-chloro-6-fluoro-1-(2-isopropyl-4-methylpyridin-3-yl)pyrido[2,3-d]pyrimidin-2(1H)-oneTFA (10 mL) was added to a solution of (MS)-tert-butyl 4-(7-chloro-6-fluoro-1-(2-isopropyl-4-methylpyridin-3-yl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-3-methylpiperazine-1-carboxylate (Intermediate 65A, 3.0 g, 5.7 mmol) in DCM (20 mL). The mixture was stirred for 20 min at rt and then concentrated in vacuo. The resulting residue was re-dissolved in DCM (40 mL) and cooled to 0° C. DIPEA (5.0 mL, 28 mmol) and acryloyl chloride (0.46 mL, 5.7 mmol) were sequentially added and the mixture was stirred for 80 min. The reaction mixture was quenched at 0° C. by adding satd. NaHCO3 (100 mL) and water (50 mL) and diluted with DCM (150 mL). The aqueous layer was extracted with DCM (2×50 mL). The combined organic extracts were dried over MgSO4 and then concentrated in vacuo to give crude (M,S)-4-(4-acryloyl-2-methylpiperazin-1-yl)-7-chloro-6-fluoro-1-(2-isopropyl-4-methylpyridin-3-yl)pyrido[2,3-d]pyrimidin-2(1H)-one which was used without further purification in the following step. m/z (ESI, +ve ion): 485.0 (M+H)+.
Step 5: (M)-6-Fluoro-7-(5-fluoro-2-hydroxyphenyl)-1-(4-methyl-2-(2-propanyl)-3-pyridinyl)-4-((2S)-2-methyl-4-(2-propenoyl)-1-piperazinyl)pyrido[2,3-d]pyrimidin-2(1H)-oneA mixture of (M,S)-4-(4-acryloyl-2-methylpiperazin-1-yl)-7-chloro-6-fluoro-1-(2-isopropyl-4-methylpyridin-3-yl)pyrido[2,3-d]pyrimidin-2(1H)-one (120 mg, 0.25 mmol), (5-fluoro-2-hydroxy)phenylboronic acid (58 mg, 0.37 mmol, Combi-Blocks, San Diego, CA, USA), Pd(dppf)Cl2 (18 mg, 0.025 mmol), and potassium acetate (120 mg, 1.2 mmol) in 1,4-dioxane (1.2 mL) and one drop of water was deoxygenated with nitrogen for 10 min. The mixture was stirred at 90° C. for 2 h, then was filtered through a plug of silica gel and then partitioned between water (50 mL) and EtOAc (50 mL). The organic phase was washed with water (50 mL) and then with brine (50 mL), dried over MgSO4, filtered, and concentrated in vacuo. The crude product was purified by silica gel chromatography (eluent: 0-100% EtOAc-EtOH (3:1)/heptane) to provide (M)-6-fluoro-7-(5-fluoro-2-hydroxyphenyl)-1-(4-methyl-2-(2-propanyl)-3-pyridinyl)-4-((2S)-2-methyl-4-(2-propenoyl)-1-piperazinyl)pyrido[2,3-d]pyrimidin-2(1H)-one. 1H NMR (400 MHz, DMSO-d6) δ 0.96 (d, J=6.8 Hz, 3H), 1.08 (d, J=6.8 Hz, 3H), 1.33 (d, J=6.8 Hz, 3H), 1.94 (s, 3H), 2.68-2.78 (m, 0.5H), 3.06-3.19 (m, 0.5H), 3.43-3.55 (m, 0.5H), 3.59-3.80 (m, 1.5H), 3.98-4.07 (m, 0.5H), 4.10-4.19 (m, 0.5H), 4.29 (br d, J=13.5 Hz, 1.5H), 4.40 (br d, J=12.7 Hz, 0.5H), 4.91 (br s, 1H), 5.73-5.81 (m, 1H), 6.21 (br d, J=16.4 Hz, 1H), 6.80-6.93 (m, 2H), 7.09 (dd, J=9.4, 3.2 Hz, 1H), 7.18 (td, J=8.5, 3.1 Hz, 1H), 7.26 (d, J=5.0 Hz, 1H), 8.26-8.37 (m, 1H), 8.48 (d, J=5.0 Hz, 1H), 10.35 (s, 1H). 19F NMR (376 MHz, DMSO-d6) δ −126.02 (s, 1F), −125.16 (s, 1F). m/z (ESI, +ve ion ion): 561.0 (M+H)+.
Method 79
A 50-mL round-bottomed flask was charged with (M)-6-chloro-7-(2-fluorophenyl)-1-(2-isopropyl-4-methylpyridin-3-yl)pyrido[2,3-d]pyrimidine-2,4(1H,3H)-dione (Intermediate 76A, 256 mg, 0.60 mmol) and DIPEA (0.2 mL, 0.90 mmol) in acetonitrile (3 mL) followed by phosphorous oxychloride (0.1 mL, 0.9 mmol). The mixture was stirred and heated at 80° C. for 40 min. The reaction mixture was concentrated in vacuo to give (M)-4,6-dichloro-7-(2-fluorophenyl)-1-(2-isopropyl-4-methylpyridin-3-yl)pyrido[2,3-d]pyrimidin-2(1H)-one as brown solid [m/z (ESI, +ve ion): 443 (M+H)+] which was used in next step without purification.
A mixture of the above crude (M)-4,6-dichloro-7-(2-fluorophenyl)-1-(2-isopropyl-4-methylpyridin-3-yl)pyrido[2,3-d]pyrimidin-2(1H)-one (267 mg, 0.6 mmol) in acetonitrile (3 mL) was treated with DIPEA (0.3 mL, 1.81 mmol) followed by 1-Boc-3-(hydroxy)azetidine (313 mg, 1.81 mmol, CNH Technologies, Inc., Woburn, MA, USA). The reaction mixture was stirred at it for 24 h then concentrated in vacuo and purified by silica gel chromatography (eluent: 0-30% 3:1 EtOAc-EtOH/heptane) to provide (M)-tert-butyl 3-((6-chloro-7-(2-fluorophenyl)-1-(2-isopropyl-4-methylpyridin-3-yl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)oxy)azetidine-1-carboxylate (51 mg, 0.09 mmol, 14.6% yield) as a light yellow foam. m/z (ESI, +ve ion) 580.3 (M+H)+.
Step 2: (M)-4-((1-Acryloylazetidin-3-yl)oxy)-6-chloro-7-(2-fluorophenyl)-1-(2-isopropyl-4-methylpyridin-3-yl)pyrido[2,3-d]pyrimidin-2(1H)-oneTo a solution of (M)-tert-butyl 3-((6-chloro-7-(2-fluorophenyl)-1-(2-isopropyl-4-methylpyridin-3-yl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)oxy)azetidine-1-carboxylate (51 mg, 0.9 mmol) in DCM (1 mL) was treated with TFA (1 mL) at rt and stirred for 1 h. The reaction was concentrated to afford (M)-4-(azetidin-3-yloxy)-6-chloro-7-(2-fluorophenyl)-1-(2-isopropyl-4-methylpyridin-3-yl)pyrido[2,3-d]pyrimidin-2(1H)-one as a yellow gum. m/z (ESI, +ve ion) 480.2 (M+H)+.
A mixture of the above (M)-4-(azetidin-3-yloxy)-6-chloro-7-(2-fluorophenyl)-1-(2-isopropyl-4-methylpyridin-3-yl)pyrido[2,3-d]pyrimidin-2(1H)-one and DIPEA (0.08 mL, 0.44 mmol) in DCM (1 mL) was treated with acryloyl chloride (0.25 M in DCM, 0.3 mL, 0.08 mmol) at 0° C. and stirred for 5 min. The reaction mixture was concentrated in vacuo and the crude product was purified by silica gel chromatography (eluent: 0-50% EtOAc-EtOH (3:1)/heptane) to give (M)-4-((1-acryloylazetidin-3-yl)oxy)-6-chloro-7-(2-fluorophenyl)-1-(2-isopropyl-4-methylpyridin-3-yl)pyrido[2,3-d]pyrimidin-2(1H)-one (22 mg, 0.041 mmol, 46.2% yield) as a white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.83 (s, 1H), 8.43 (d, J=4.8 Hz, 1H), 7.47-7.64 (m, 1H), 7.18-7.39 (m, 4H), 6.32-6.51 (m, 1H), 6.16 (dd, J=17.0, 2.1 Hz, 1H), 5.62-5.84 (m, 2H), 4.70-4.85 (in, 1H), 4.54 (td, J=10.4, 3.2 Hz, 1H), 4.44 (br dd, J=11.2, 6.8 Hz, 1H), 4.23-4.37 (m, 1H), 2.76 (dt, J=13.4, 6.8 Hz, 1H), 1.96 (s, 3H), 1.07 (d, J=6.8 Hz, 3H), 0.94 (d, J=6.6 Hz, 3H). 19F NMR (376 MHz, DMSO-d6) δ −114.69 (d, J=4.3 Hz, 1F). m/z (ESI, +ve) 534.1 (M+H)+.
Method 80
To a stirred solution of 2,5,6-trichloronicotinamide (Intermediate P, 1.3 g, 5.5 mmol) in THF (10 mL) was added oxalyl chloride (2 M in DCM, 4.2 mL, 8.4 mmol). After the addition was completed, the reaction mixture was stirred and heated at 65° C. for 2 h. The reaction mixture was cooled, concentrated in vacuo and the crude residue was dissolved in THF (10 mL) and a solution of 4-(((tert-butyldiphenylsilyl)oxy)methyl)-2-isopropyl-6-methylaniline (Intermediate I-37, 2.3 g, 5.5 mmol) in THF (10 mL) was added. After the addition was completed, the solution was maintained at it for 2 h. The mixture was concentrated in vacuo to provide crude N-((4-(((tert-butyldiphenylsilyl)oxy)methyl)-2-isopropyl-6-methylphenyl)carbamoyl)-2,5,6-trichloronicotinamide which was carried forward in the next step without purification. m/z (ESI, +ve ion): 668.0 (M+H)+.
Step 2: 1-(4-(((tert-Butyldiphenylsilyl)oxy)methyl)-2-isopropyl-6-methylphenyl)-6,7-dichloropyrido[2,3-d]pyrimidine-2,4(1H,3H)-dioneTo a stirred solution of N-((4-(((tert-butyldiphenylsilyl)oxy)methyl)-2-isopropyl-6-methylphenyl)carbamoyl)-2,5,6-trichloronicotinamide (3.7 g, 5.5 mmol) in THF (20 mL) at 0° C. was added 1 M KHMDS in THF (11 mL, 11 mmol). After 2 h, the reaction was quenched with satd. ammonium chloride and diluted with EtOAc. The aqueous layer was extracted with EtOAc and the combined organic extracts were dried over Na2SO4, filtered, and concentrated in vacuo. The crude product was purified by silica gel chromatography (eluent: 0-50% EtOAc/heptane) to provide 1-(4-(((tert-butyldiphenylsilyl)oxy)methyl)-2-isopropyl-6-methylphenyl)-6,7-dichloropyrido[2,3-d]pyrimidine-2,4(1H,3H)-dione. m/z (ESI, +ve ion): 632.0 (M+H)+.
Step 3: tert-Butyl (S)-4-(1-(4-(((tert-butyldiphenylsilyl)oxy)methyl)-2-isopropyl-6-methylphenyl)-6,7-dichloro-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-3-methylpiperazine-1-carboxylateTo a stirred solution of 1-(4-(((tert-butyldiphenylsilyl)oxy)methyl)-2-isopropyl-6-methylphenyl)-6,7-dichloropyrido[2,3-d]pyrimidine-2,4(1H,3H)-dione (2.8 g, 4.5 mmol) in acetonitrile (20 mL) was added DIPEA (1.2 mL, 6.7 mmol), followed by phosphorus oxychloride (0.63 mL, 6.7 mmol). After the addition was completed, the mixture was stirred and heated at 60° C. for 3 h. The mixture was concentrated in vacuo to provide a crude residue which was dissolved in DCM. The solution was cooled to 0° C. and DIPEA (3.9 mL, 23 mmol) and tert-butyl (S)-3-methylpiperazine-1-carboxylate (0.90 g, 4.5 mmol) were added. After 2 h, the reaction was quenched with water, the aqueous layer was extracted with DCM and the combined organic extracts were dried over Na2SO4, then concentrated in vacuo. The crude product was purified by silica gel chromatography (eluent: 0-50% EtOAc/heptane) to provide tert-butyl (S)-4-(1-(4-(((tert-butyldiphenylsilyl)oxy)methyl)-2-isopropyl-6-methylphenyl)-6,7-dichloro-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-3-methylpiperazine-1-carboxylate. 1H NMR (400 MHz, DMSO-d6) δ 0.96 (d, J=6.7 Hz, 3H), 1.02 (d, J=6.8 Hz, 3H), 1.08 (s, 9H), 1.31 (dd, J=8.9, 7.1 Hz, 3H), 1.45 (s, 9H), 1.87 (d, J=2.5 Hz, 3H), 2.39-2.47 (m, 1H), 2.96-3.19 (m, 2H), 3.28 (s, 1H), 3.59-3.74 (m, 1H), 3.82 (br d, J=12.0 Hz, 1H), 3.88-4.00 (m, 1H), 4.09-4.23 (m, 1H), 4.83 (s, 3H), 7.10 (s, 1H), 7.31 (s, 1H), 7.41-7.54 (m, 6H), 7.69 (br d, J=7.7 Hz, 4H), 8.42 (d, J=9.5 Hz, 1H).
Step 4: tert-Butyl (S)-4-(1-(4-(((tert-butyldiphenylsilyl)oxy)methyl)-2-isopropyl-6-methylphenyl)-6-chloro-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-3-methylpiperazine-1-carboxylateA mixture of tert-butyl (S)-4-(1-(4-(((tert-butyldiphenylsilyl)oxy)methyl)-2-isopropyl-6-methylphenyl)-6,7-dichloro-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-3-methylpiperazine-1-carboxylate (2.8 g, 3.4 mmol), (2-fluorophenyl)boronic acid (0.71 g, 5.1 mmol. Combi-Blocks, San Diego. CA, USA), potassium acetate (1.7 g, 17 mmol), and Pd(dppf)Cl2 (0.25 g, 0.34 mmol) in 1,4-dioxane (20 mL)/water (0.5 mL) was stirred and heated at 90° C. for 3 h. The mixture was cooled to rt and diluted with water. The aqueous mixture was extracted with EtOAc, the combined organic extracts were dried over Na2SO4 and concentrated in vacuo to provide tert-butyl (S)-4-(1-(4-(((tert-butyldiphenylsilyl)oxy)methyl)-2-isopropyl-6-methylphenyl)-6-chloro-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-3-methylpiperazine-1-carboxylate which was used in the next step without further purification.
Step 5: (S)-4-(4-Acryloyl-2-methylpiperazin-1-yl)-1-(4-(((tert-butyldiphenylsilyl)oxy)methyl)-2-isopropyl-6-methylphenyl)-6-chloro-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-oneTo a solution of tert-butyl (S)-4-(1-(4-(((tert-butyldiphenylsilyl)oxy)methyl)-2-isopropyl-6-methylphenyl)-6-chloro-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-3-methylpiperazine-1-carboxylate (2.0 g, 2.3 mmol) in DCM (10 mL) was added TFA (3.5 mL, 46 mmol). The reaction was stirred at rt for 3 h and concentrated in vacuo. The residue was dissolved in DCM (10 mL), cooled to 0° C., then treated with DIPEA (2.0 mL, 11 mmol) and acryloyl chloride (1.1 M in DCM, 2.1 mL, 2.3 mmol). The reaction was stirred at 0° C. for 2 h, the mixture was diluted with water and extracted with DCM. The organic layer was dried over Na2SO4 and concentrated in vacuo. The crude product was purified by silica gel chromatography (eluent: 0-70% EtOAc/heptane) to provide (S)-4-(4-acryloyl-2-methylpiperazin-1-yl)-1-(4-(((tert-butyldiphenylsilyl)oxy)methyl)-2-isopropyl-6-methylphenyl)-6-chloro-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-one. 1H NMR (400 MHz, DMSO-4) a 0.88-0.94 (m, 3H), 1.03 (s, 9H), 1.24-1.28 (m, 3H), 1.31-1.37 (m, 3H), 1.87 (s, 3H), 3.03-3.33 (m, 2H), 3.58-3.83 (m, 2H), 3.98-4.19 (m, 1H), 4.22-4.48 (m, 2H), 4.76 (s, 2H), 4.93 (br s, 1H), 5.76 (br d, J=10.6 Hz, 1H), 6.13-6.27 (m, 1H), 6.79-6.94 (m, 1H), 7.02 (br s, 1H), 7.17-7.33 (m, 4H), 7.35-7.55 (m, 7H), 7.60-7.68 (m, 4H), 8.44 (br s, 1H). 19F NMR (377 MHz, DMSO-d6) δ −114.17 (s, 1F).
Step 6: (S)-4-(4-Acryloyl-2-methylpiperazin-1-yl)-6-chloro-7-(2-fluorophenyl)-1-(4-(hydroxymethyl)-2-isopropyl-6-methylphenyl)pyrido[2,3-d]pyrimidin-2(1H)-one (Intermediate 80A)To a stirred solution of (S)-4-(4-acryloyl-2-methylpiperazin-1-yl)-1-(4-(((tert-butyldiphenylsilyl)oxy)methyl)-2-isopropyl-6-methylphenyl)-6-chloro-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-one (270 mg, 0.33 mmol) in THF (5 mL) was added TBAF (1 M in THF, 0.33 mL, 0.33 mmol). The mixture was stirred at rt for 2 h and concentrated in vacuo. The crude product was purified by silica gel chromatography (eluent: 0-50% 3:1 EtOAc-EtOH/heptane) to provide (S)-4-(4-acryloyl-2-methylpiperazin-1-yl)-6-chloro-7-(2-fluorophenyl)-1-(4-(hydroxymethyl)-2-isopropyl-6-methylphenyl)pyrido[2,3-d]pyrimidin-2(1H)-one (Intermediate 80A). 1H NMR (400 MHz, DMSO-d6) δ 0.94 (d, J=6.8 Hz, 3H), 1.05 (d, J=6.8 Hz, 3H), 1.33 (d, J=6.8 Hz, 3H), 1.87 (s, 3H), 2.51-2.58 (m, 1H), 3.03-3.28 (m, 1H), 3.41-3.86 (m, 2H), 3.97-4.44 (m, 3H), 4.46 (d, J=5.8 Hz, 2H), 4.92 (br s, 1H), 5.14 (t, J=5.8 Hz, 1H), 5.71-5.81 (m, 1H), 6.20 (br dd, J=16.6, 3.3 Hz, 1H), 6.79-6.94 (m, 1H), 7.05 (s, 1H), 7.16 (s, 1H), 7.18-7.23 (m, 1H), 7.24-7.36 (m, 2H), 7.47-7.56 (m, 1H), 8.43 (br d, J=4.6 Hz, 1H). 19F NMR (376 MHz, DMSO-d6) δ −114.26 (s, 1F); m/z (ESI, +ve ion): 590.0 (M+H)+.
Step 7: (S)-4-(4-(4-Acryloyl-2-methylpiperazin-1-yl)-6-chloro-7-(2-fluorophenyl)-2-oxopyrido[2,3-d]pyrimidin-1(2H)-yl)-3-isopropyl-5-methylbenzaldehydeTo a solution of (S)-4-(4-acryloyl-2-methylpiperazin-1-yl)-6-chloro-7-(2-fluorophenyl)-1-(4-(hydroxymethyl)-2-isopropyl-6-methylphenyl)pyrido[2,3-d]pyrimidin-2(1H)-one (Intermediate 80A, 100 mg, 0.17 mmol) in DCM (3.4 mL) at rt was added Dess-Martin periodinane (110 mg, 0.25 mmol). After 20 min, the reaction was quenched by addition of 1 N sodium thiosulfate (10 mL) and diluted with DCM (5 mL). The layers were partitioned and then the aqueous phase was washed with DCM (2-10 mL). The combined organic extracts were dried over anhydrous sodium sulfate, filtered through Celite®, and concentrated under reduced pressure to afford crude (S)-4-(4-(4-acryloyl-2-methylpiperazin-1-yl)-6-chloro-7-(2-fluorophenyl)-2-oxopyrido[2,3-d]pyrimidin-1(2H)-yl)-3-isopropyl-5-methylbenzaldehyde as a light-yellow foam that was carried forward in the following step without purification. m/z (ESI, +ve ion): 588.0 (M+H)+.
Step 8: 6-Chloro-1-(4-((dimethylamino)methyl)-2-methyl-6-(2-propanyl)phenyl)-7-(2-fluorophenyl)-4-((2S)-2-methyl-4-(2-propenoyl)-1-piperazinyl)pyrido[2,3-d]pyrimidin-2(1H)-oneTo a solution of (S)-4-(4-(4-acryloyl-2-methylpiperazin-1-yl)-6-chloro-7-(2-fluorophenyl)-2-oxopyrido[2,3-d]pyrimidin-1(2H)-yl)-3-isopropyl-5-methylbenzaldehyde (100 mg, 0.17 mmol) in THF (1.0 mL) at rt was added dimethyl amine solution (2 M in THF, 95 μL, 0.19 mmol), glacial acetic acid (10 μL, 0.17 mmol), and sodium triacetoxyborohydride (72 mg, 0.34 mmol). The resulting cloudy yellow mixture was stirred at rt. After 18 h, the reaction mixture was diluted with EtOAc (10 mL) and water (5 mL), then saturated aqueous sodium bicarbonate (5 mL) was added until the aqueous phase was neutralized. The layers were partitioned and the aqueous phase was extracted with EtOAc (1×20 mL), then the combined organic extracts were dried over anhydrous magnesium sulfate, filtered, and concentrated to afford a light-yellow-oil. The crude product was purified by silica gel chromatography (eluent: 0-20% 2 M NH3 in MeOH/DCM) to afford 6-chloro-1-(4-((dimethylamino)methyl)-2-methyl-6-(2-propanyl)phenyl)-7-(2-fluorophenyl)-4-((2S)-2-methyl-4-(2-propenoyl)-1-piperazinyl)pyrido[2,3-d]pyrimidin-2(1H)-one. 1H NMR (4 (400 MHz, DMSO-d6) δ 0.92 (d, J=6.8 Hz, 3H), 1.05 (d, J=6.8 Hz, 3H), 1.31-1.36 (m, 3H), 1.87 (s, 3H), 2.14 (s, 6H), 3.02-3.26 (m, 1H), 3.35 (s, 2H), 3.44-3.83 (m, 2H), 3.97-4.47 (m, 3H), 4.93 (br s, 1H), 5.72-5.80 (m, 1H), 6.13-6.28 (m, 1H), 6.79-6.93 (m, 1H), 7.02 (s, 1H), 7.11 (s, 1H), 7.14-7.36 (m, 4H), 7.42-7.56 (m, 1H), 8.43 (br s, 1H). 19F NMR (376 MHz, DMSO-d6) δ −113.53 (s, 1F). m/z (ESI, +ve ion): 617.2 (M+H)+.
Method 92
To a mixture of (M)-6,7-dichloro-1-(2-isopropyl-4-methylpyridin-3-yl)pyrido[2,3-d]pyrimidine-2,4(1H,3H)-dione (Intermediate 73B, 9.96 g, 27.3 mmol) and DIPEA (7.1 mL, 40.9 mmol) in acetonitrile (100 mL) was added phosphorous oxychloride (3.8 mL, 40.9 mmol) and the mixture was stirred at 80° C. for 1.5 h. The reaction mixture was concentrated in vacuo to give brown solid. The crude solid was used in next step without purification. m/z (ESI, +ve ion): 383.0 (M+H)+.
The above crude solid and DIPEA (7.1 mL, 40.9 mmol) in DMF (60 mL) was treated with (2R,5S)-1-(tert-butoxycarbonyl)-2,5-dimethylpiperazine (6.43 g, 30 mmol, AstaTech, Inc.) and stirred at rt for 16 h. The mixture was treated with satd. NaHCO3 (100 mL) and stirred at rt for 15 min. The resulting precipitate was collected by filtration, washed with water, and dried to give (M)-tert-butyl (2R,5S)-4-(6,7-dichloro-1-(2-isopropyl-4-methylpyridin-3-yl)-2-oxo-1,2-dihydropyrido[2,3<d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (Intermediate 92A, 14.8 g, 26.4 mmol, 97% yield). 1H NMR (400 MHz, DMSO-d6) δ 8.46-8.50 (m, 2H), 7.26 (d, J=5.0 Hz, 1H), 4.12-4.87 (m, 2H), 3.94-4.05 (m, 1H), 3.89 (br d, J=7.9 Hz, 1H), 3.67 (dd, J=13.8, 2.6 Hz, 1H), 3.41-3.58 (m, 1H), 2.61 (quin. J=6.7 Hz, 1 H), 1.94 (s, 3H), 1.44 (s, 9H), 1.30 (d, J=6.4 Hz, 3H), 1.09 (br d, J=6.4 Hz, 3H), 1.05 (d, J=6.8 Hz, 3H), 1.02 (d, J=6.6 Hz, 3H). m/z (ESI, +ve ion): 561.2 (M+H)+.
Step 2: (M)-4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-6,7-dichloro-1-(2-isopropyl-4-methylpyridin-3-yl)pyrido[2,3-d]pyrimidin-2(1H)-oneA mixture of (M)-tert-butyl (2R,5S)-4-(6,7-dichloro-1-(2-isopropyl-4-methylpyridin-3-yl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (Intermediate 92A, 0.82 g, 1.45 mmol) in DCM (7 mL) and TFA (7 mL) was stirred at rt for 30 min. The reaction was concentrated in vacuo to afford (M)-6,7-dichloro-4-((2S,5R)-2,5-dimethylpiperazin-1-yl)-1-(2-isopropyl-4-methylpyridin-3-yl)pyrido[2,3-d]pyrimidin-2(1H)-one as yellow syrup. m/z (ESI, +ve ion): 461.2 (M+H)+.
A mixture of (A)-6,7-dichloro-4-((2S,5R)-2,5-dimethylpiperazin-1-yl)-1-(2-isopropyl-4-methylpyridin-3-yl)pyrido[2,3-d]pyrimidin-2(H)-one and DIPEA (1.3 mL, 7.26 mmol) in DCM (7 mL) was treated with acryloyl chloride (0.12 mL, 1.45 mmol) at 0° C. and stirred for 40 min. The reaction mixture was concentrated in vacuo. The crude product was purified by silica gel chromatography (eluent: 0-100% EtOAc-MeOH (9:1)/heptane) to provide pure (M)-4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-6,7-dichloro-1-(2-isopropyl-4-methylpyridin-3-yl)pyrido[2,3-d]pyrimidin-2(H)-one (Intermediate 92B; 0.53 g, 1.03 mmol, 71% yield) as a light-yellow foam. 1H NMR (400 MHz, DMSO-d6) δ 8.46-8.54 (m, 2H), 7.30 (d, J=5.0 Hz, 1H), 6.82 (ddd, J=16.5, 14.0, 10.5 Hz, 1H), 6.18 (dd, J=16.7, 2.2 Hz, 1H), 5.74 (dt, J=10.4, 2.7 Hz, 1H), 4.78-4.91 (m, 1H), 4.39-4.75 (m, 1H), 3.97-4.16 (m, 1H), 3.94 (br s, 1H), 3.83 (br d, J=3.9 Hz, 1H), 3.49 (br dd, J=13.9, 3.7 Hz, 1H), 2.59-2.70 (m, 1H), 1.97 (s, 3H), 1.25-1.32 (m, 3H), 1.09-1.20 (m, 3H), 1.05 (dd, J=11.4, 6.6 Hz, 6H). m/z (ESI, +ve ion): 515.2 (M+H)+.
Step 3: (M)-6-Chloro-4-[(2S,5R)-2,5-dimethyl-4-prop-2-enoyl-piperazin-1-yl]-1-(2-isopropyl-4-methyl-3-pyridyl)-7-(2-isopropylphenyl)pyrido[2,3-d]pyrimidin-2-oneA mixture of (M)-4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-6,7-dichloro-1-(2-isopropyl-4-methylpyridin-3-yl)pyrido[2,3-d]pyrimidin-2(1H)-one (Intermediate 92B: 1.01 g, 1.97 mmol), tetrakis(triphenylphosphine)palladium (0) (0.23 g, 0.20 mmol, Sigma-Aldrich Corporation), 2-isopropylphenylboronic acid (0.49 g, 2.95 mmol, Combi-Blocks Inc.) and sodium carbonate (0.63 g, 5.9 mmol) in 1,4-dioxane (6 mL) and water (3 mL) was stirred and heated at 90° C. for 2 h. The mixture was treated with water (25 mL), extracted with EtOAc (2×50 mL), dried over MgSO4, filtered, and concentrated in vacuo. The crude product was purified by silica gel chromatography (eluent: 0-70% of EtOAc-EtOH (3:1)/heptane) to provide (M)-6-chloro-4-[(2S,5R)-2,5-dimethyl-4-prop-2-enoyl-piperazin-1-yl]-1-(2-isopropyl-4-methyl-3-pyridyl)-7-(2-isopropylphenyl)pyrido[2,3-d]pyrimidin-2-one (0.52 g, 0.86 mmol, 43.79% yield) as light-yellow solid. 1HNMR (400 MHz DMSO-d6) δ 8.42 (d J=5.2 Hz, 1H), 8.35 (d, J=5.0 Hz, 1H), 7.37 (d, J=3.9 Hz, 2H), 7.22 (dt, J=8.2, 4.0 Hz, 1H), 7.16 (d, J=5.0 Hz, 1H), 7.00 (d, J=7.5 Hz, 1H), 6.84 (ddd, J=20.3, 16.8, 10.6 Hz, 1H), 6.19 (dd, J=16.7, 2.2 Hz, 1H), 5.72-5.80 (m, 1H), 4.44-4.93 (m, 2H), 3.39-4.32 (m, 4H), 2.74 (br s, 1H), 2.52-2.60 (m, 1H), 1.89 (s, 3H), 1.36 (dd, J=6.3, 3.8 Hz, 3H), 1.26 (br dd, J=24.7, 6.6 Hz, 3H), 0.80-1.10 (m, 12H). m/z (ESI, +ve ion): 599.2 (M+H)+.
Method 93
A mixture of (A)-4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-6,7-dichloro-1-(2-isopropyl-4-methylpyridin-3-yl)pyrido[2,3-d]pyrimidin-2(1H)-one (Intermediate 92B: 0.15 g, 0.29 mmol), 3-methylthiophene-2-boronic acid (0.06 g, 0.44 mmol, Combi-Blocks Inc.), sodium carbonate (0.094 g, 0.89 mmol), and Pd(AmPhos) Cl2 (0.013 g, 0.018 mmol, Sigma-Aldrich Corporation) in 1,4-dioxane (1 mL) and water (0.5 mL) was stirred and heated at 100° C. for 16 h. The crude material was purified by silica gel chromatography (eluent: 0-60% EtOAc-EtOH (3:1)/heptane) to provide (M)-6-chloro-4-[(2S,5R)-2,5-dimethyl-4-prop-2-enoyl-piperazin-1-yl]-1-(2-isopropyl-4-methyl-3-pyridyl)-7-(3-methyl-2-thienyl)pyrido[2,3-d]pyrimidin-2-one (0.010 g, 0.018 mmol, 6.1% yield) as yellow solid. 1H NMR (400 MHz, DMSO-d6) δ 8.45 (d, J=4.8 Hz, 1H), 8.39 (d, J=3.9 Hz, 1H), 7.66 (d, J=5.0 Hz, 1H), 7.23 (d, J=5.0 Hz, 1H), 6.94 (d, J=5.2 Hz, 1H), 6.83 (td, J=17.2, 10.7 Hz, 1H), 6.19 (dd, J=16.7, 1.3 Hz, 1H), 5.71-5.78 (m, 1H), 4.41-4.94 (m, 2H), 3.42-4.23 (m, 4H), 2.63-2.74 (m, 1H), 1.94 (s, 3H), 1.83 (s, 3H), 1.33 (t, J=6.5 Hz, 3H), 1.21 (br dd, J=27.7, 6.5 Hz, 3H), 1.06 (d, J=6.8 Hz, 3H), 0.94 (d, J=6.6 Hz, 3H). m/z (ESI, +ve ion): 577.3 (M+H)+.
Method 94
A solution of (M)-7-chloro-6-fluoro-1-(2-isopropyl-4-methylpyridin-3-yl)pyrido[2,3-d]pyrimidine-2,4(1H,3H)-dione (Intermediate 72A; 3.35 g, 9.61 mmol), phosphorous oxychloride (1.07 mL, 11.53 mmol), and DIPEA (5.02 mL, 28.8 mmol) in acetonitrile (24 mL) was stirred at 80° C. for 30 min. The reaction mixture was cooled to rt and added (2R,5S)-tert-butyl 2,5-dimethylpiperazine-1-carboxylate (2.26 g, 10.6 mmol). The reaction mixture was stirred at rt for 15 min. The reaction mixture was diluted with EtOAc (200 mL), washed with satd. NaHCO3 (3×75 mL), dried over Na2SO4, filtered, and concentrated in vacuo. The crude product was purified by silica gel chromatography (eluent: 0-100% EtOAc/heptane) to provide (M)-tert-butyl (2R,5S)-4-(7-chloro-6-fluoro-1-(2-isopropyl-4-methylpyridin-3-yl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (Intermediate 94A; 2.2 g, 4.04 mmol, 42.0% yield) as yellow-orange solid. 1H NMR (400 MHz, CHLOROFORM-d) δ 8.57 (d, J=5.0 Hz, 1H), 7.79 (br d, J=7.5 Hz, 1H), 7.13-7.16 (m, 1H), 4.80-5.04 (m, 1H), 4.32-4.64 (m, 1H), 3.73-4.08 (m, 3H), 3.43-3.66 (m, 1H), 2.58 (dt, J=13.4, 6.6 Hz, 1H), 2.04 (s, 3H), 1.59 (s, 9H), 1.39-1.48 (m, 3H), 1.11-1.25 (m, 9H). 19F NMR (377 MHz, CHLOROFORM-d) δ −126.30 (br s, 1F) −126.34 (br s, 1F). m/z (ESI, +ve ion): 544.8 (M+H)+.
Step 2: (M)-4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-7-chloro-6-fluoro-1-(2-isopropyl-4-methylpyridin-3-yl)pyrido[2,3-d]pyrimidin-2(1H)-oneA mixture of (M)-tert-butyl (2R,5S)-4-(7-chloro-6-fluoro-1-(2-isopropyl-4-methylpyridin-3-yl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (Intermediate 94A; 8.16 g, 14.97 mmol) in DCM (30 mL) and TFA (30 mL) was stirred at rt for 30 min. The reaction mixture was concentrated in vacuo to provide (M)-7-chloro-4-((2S,5R)-2,5-dimethylpiperazin-1-yl)-6-fluoro-1-(2-isopropyl-4-methylpyridin-3-yl)pyrido[2,3-d]pyrimidin-2(1H)-one. The crude product was used in next step without purification. m/z (ESI, +ve ion) 445.1 (M+H)+.
A mixture of (M) 7-chloro-4-((2S,5R)-2,5-dimethylpiperazin-1-yl)-6-fluoro-1-(2-isopropyl-4-methylpyridin-3-yl)pyrido[2,3-d]pyrimidin-2(1H)-one and DIPEA (13.1 mL, 74.9 mmol) in DCM (20 mL) was cooled to 0° C. To the cooled mixture was added acryloyl chloride (1.22 mL, 14.97 mmol) and stirred for 1 h. The reaction mixture was quenched with satd. NH4Cl (50 mL), extracted with DCM (2×50 mL)), dried over MgSO4, filtered, and concentrated in vacuo. The crude product was purified by silica gel chromatography (eluent: 0-100% EtOAc-MeOH (9:1)/heptane) to provide (A)-4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-7-chloro-6-fluoro-1-(2-isopropyl-4-methylpyridin-3-yl)pyrido[2,3-d]pyrimidin-2(1H)-one (Intermediate 94B; 5.62 g, 11.3 mmol, 75% yield) as light-yellow foam. 1H NMR (400 MHz, DMSO-d4) δ 8.53 (d, J=5.0 Hz, 1H), 8.44 (d, J=8.5 Hz, 1H), 7.35 (br d, J=3.7 Hz, 1H), 6.83 (td, J=16.9, 10.6 Hz, 1H), 6.18 (dd, J=16.6, 2.3 Hz, 1H), 5.69-5.80 (m, 1H), 4.65-4.92 (m, 2H), 3.79-4.15 (m, 3H), 3.07-3.69 (m, 1H), 2.60-2.72 (m, 1H), 1.98 (s, 3H), 1.20-1.33 (m, 6H), 1.06 (dd, J=13.1, 6.8 Hz, 6H). m/z (ESI, +ve ion): 499.2 (M+H)+.
Step 3: (M)-4-[(2S,5R)-2,5-Dimethyl-4-prop-2-enoyl-piperazin-1-yl]-6-fluoro-1-(2-isopropyl-4-methyl-3-pyridyl)-7-(2-isopropylphenyl)pyrido[2,3-d]pyrimidin-2-oneA mixture of (M)-4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-7-chloro-6-fluoro-1-(2-isopropyl-4-methylpyridin-3-yl)pyrido[2,3-d]pyrimidin-2(1H)-one (Intermediate 94B; 0.21 g, 0.42 mmol), 2-isopropylphenylboronic acid (0.10 g, 0.62 mmol, Combi-Blocks Inc.), sodium carbonate (0.13 g, 1.25 mmol), and tetrakis(triphenylphosphine)palladium(0) (0.048 g, 0.042 mmol. Sigma-Aldrich Corporation) in 1,4-dioxane (1.2 mL) and water (0.6 mL) was stirred and heated at 90° C. The crude material was purified by silica gel chromatography (eluent: 0-50% of EtOAc-EtOH (3:1)/heptane) to provide (A)-4-[(2S,5R)-2,5-dimethyl-4-prop-2-enoyl-piperazin-1-yl]-6-fluoro-1-(2-isopropyl-4-methyl-3-pyridyl)-7-(2-isopropylphenyl)pyrido[2,3-d]pyrimidin-2-one (0.037 g, 0.063 mmol, 15% yield) as off-white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.37 (d, J=4.8 Hz, 1H), 8.30 (dd, J=9.4, 3.2 Hz, 1H), 7.38-7.44 (m, 2H), 7.21-7.27 (m, 1H), 7.18 (d, J=5.0 Hz, 1H), 7.12 (d, J=7.7 Hz, 1H), 6.77-6.92 (m, 1H), 6.19 (dd, J=16.7, 2.2 Hz, 1H), 5.73-5.78 (m, 1H), 4.82-4.93 (m, 1H), 4.43-4.81 (m, 1H), 3.44-4.27 (m, 4H), 2.69 (quin, J=6.4 Hz, 2H), 1.92 (s, 3H), 1.33 (t, J=6.3 Hz, 3H), 1.18-1.30 (m, 3H), 0.87-1.09 (m, 12H). 19F NMR (376 MHz, DMSO-d6) δ −129.20 (d, J=10.4 Hz, 1F). m/z (ESI, +ve ion): 582.8 (M+H)+.
Method 95
A mixture of (M)-tert-butyl (2R,5S)-4-(6,7-dichloro-1-(2-isopropyl-4-methylpyridin-3-yl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (Intermediate 92A; 0.31 g, 0.55 mmol), Pd(AmPhos)Cl2 (0.020 g, 0.028 mmol, Sigma-Aldrich Corporation), and cyclohexylzine bromide, 0.5 M in THF (2.20 mL, 1.10 mmol, Rieke Metals, Inc.) in THF (1 mL) was stirred and heated at 80° C. for 4 h. The reaction mixture was purified by silica gel chromatography (eluent: 0-50% of EtOAc-EtOH (3:1)/heptane) to provide (M)-tert-butyl (2R,5S)-4-(6-chloro-7-cyclohexyl-1-(2-isopropyl-4-methylpyridin-3-yl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.13 g, 0.22 mmol, 39.7% yield) as light-yellow syrupy solid. 1H NMR (400 MHz, DMSO-d6) δ 8.48 (d, J=5.0 Hz, 1H), 8.22 (s, 1H), 7.25 (d, J=5.0 Hz, 1H), 4.76 (br d, J=1.5 Hz, 1H), 4.30 (br d, J=38.8 Hz, 1H), 4.09 (br d, J=13.7 Hz, 1H), 3.76 (br dd, J=9.7, 2.5 Hz, 1H), 3.68 (br d, J=13.5 Hz, 1H), 3.34-3.56 (m, 1H), 3.01 (tt, J=11.1, 3.0 Hz, 1H), 2.67 (quin, J=6.7 Hz, 1H), 1.85 (s, 3H), 1.50-1.75 (m, 6H), 1.44 (s, 9H), 1.31 (d, J=6.6 Hz, 3H), 1.19-1.29 (m, 4H), 1.15 (br d, J=6.4 Hz, 3H), 1.09 (d, J=6.6 Hz, 3H), 0.97 (d, J=6.8 Hz, 3H). m/z (ESI, +ve ion): 609.3 (M+H)+.
Step 2: (M)-6-Chloro-7-cyclohexyl-4-[(2S,5R)-2,5-dimethyl-4-prop-2-enoyl-piperazin-1-yl]-1-(2-isopropyl-4-methyl-3-pyridyl)pyrido[2,3-d]pyrimidin-2-oneA mixture of (A)-tert-butyl (2R,5S)-4-(6-chloro-7-cyclohexyl-1-(2-isopropyl-4-methylpyridin-3-yl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.13 g, 0.22 mmol) in DCM (2 mL) and TFA (2 mL) was stirred at rt for 20 min. The mixture was concentrated in vacuo to give (M)-6-chloro-7-cyclohexyl-4-((2S,5R)-2,5-dimethylpiperazin-1-yl)-1-(2-isopropyl-4-methylpyridin-3-yl)pyrido[2,3-d]pyrimidin-2(1H)-one as orange syrup. m/z (ESI, +ve ion): 509.1 (M+H)+.
A mixture of (M)-6-chloro-7-cyclohexyl-4-((2S,5R)-2,5-dimethylpiperazin-1-yl)-1-(2-isopropyl-4-methylpyridin-3-yl)pyrido[2,3-d]pyrimidin-2(1H)-one and DIPEA (0.57 mL, 3.3 mmol) in DCM (2 mL) was treated with acryloyl chloride, 0.2 M solution in DCM (1.19 mL, 0.24 mmol) at 0° C. and stirred for 30 min. The reaction mixture was quenched with satd. NH4Cl (50 mL), extracted with EtOAc (2×50 mL), dried over Na2SO4, filtered, and concentrated in vacuo. The crude product was purified by silica gel chromatography (eluent: 0-60% EtOAc-EtOH (3:1)/heptane) to provide (M)-6-chloro-7-cyclohexyl-4-[(2S,5R)-2,5-dimethyl-4-prop-2-enoyl-piperazin-1-yl]-1-(2-isopropyl-4-methyl-3-pyridyl)pyrido[2,3-d]pyrimidin-2-one (0.05 g, 0.089 mmol, 41% yield) as white solid. 1H NMR (400 MHz, DMSO-4) δ 8.48 (d, J=4.8 Hz, 1H), 8.25 (d, J=4.1 Hz, 1H), 7.25 (d, J=4.8 Hz, 1H), 6.82 (td, J=17.5, 10.5 Hz, 1H), 6.18 (dd, J=16.6, 1.9 Hz, 1H), 5.71-5.77 (m, 1H), 4.40-4.89 (m, 2H), 3.37-4.19 (m, 4H), 3.02 (tt, J=11.0, 2.9 Hz, 1H), 2.63-2.72 (m, 1H), 1.86 (s, 3H), 1.50-1.68 (m, 5H), 1.13-1.34 (m, 9H), 1.03 (dd, J=45.3, 6.7 Hz, 8H). m/z (ESI, +ve ion): 563.3 (M+H)+.
Method 96
A mixture of (M)-4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-6,7-dichloro-1-(2-isopropyl-4-methylpyridin-3-yl)pyrido[2,3-d]pyrimidin-2(1H)-one (Intermediate 92B; 0.2 g, 0.39 mmol), 3-methyl-2-(tributylstannyl)pyridine (0.17 g, 0.44 mmol, Indofine Chemical Company, Inc), copper iodide (7.4 mg, 0.039 mmol, Sigma-Aldrich Corporation), and tetrakis(triphenylphosphine)palladium(0) (0.022 g, 0.019 mmol, Sigma-Aldrich Corporation) in 1,4-dioxane (2 mL) was stirred and heated in a Initiator microwave reactor (Personal Chemistry, Biotage AB, Inc., Upssala, Sweden) at 150° C. for 30 min. The crude material was purified by silica gel chromatography (eluent: 0-50% DCM-MeOH (4:1)/DCM) to provide (M)-6-chloro-4-[(2S,5R)-2,5-dimethyl-4-prop-2-enoyl-piperazin-1-yl]-1-(2-isopropyl-4-methyl-3-pyridyl)-7-(3-methyl-2-pyridyl)pyrido[2,3-d]pyrimidin-2-one (0.031 g, 0.054 mmol, 14% yield) as yellow solid. 1H NMR (400 MHz, DMSO-d6) δ 8.47 (d, J=4.8 Hz, 1H), 8.41 (d, J=3.9 Hz, 1H), 8.38 (d, J=5.0 Hz, 1H), 7.70 (d, J=7.7 Hz, 1H), 7.35 (dd, J=7.9, 4.8 Hz, 1H), 7.19 (d, J=4.8 Hz, 1H), 6.84 (td, J=17.1, 10.5 Hz, 1H), 6.19 (dd, J=16.6, 2.1 Hz, 1H), 5.73-5.78 (m, 1H), 4.43-4.96 (m, 2H), 4.13-4.27 (m, 1H), 3.43-3.93 (m, 3H), 2.72 (tt, J=6.6, 3.2 Hz, 1H), 1.95 (s, 3H), 1.91 (s, 3H), 1.35 (t, J=6.2 Hz, 3H), 1.18-1.28 (m, 3H), 1.06 (d, J=6.6 Hz, 3H), 0.92 (d, J=6.6 Hz, 3H). m/z (ESI, +ve ion): 572.2 (M+H)+.
Method 100
To a mixture of 2,5,6-trichloronicotinamide (Intermediate P; 1.4 g, 6.1 mmol) in THF (12 mL) was added oxalyl chloride, 2 M solution in DCM (3.3 mL, 6.5 mmol) at rt and the mixture was stirred and heated at 65° C. for 3 h. The mixture was cooled to 0° C. To the cooled mixture was added a solution of 1,4-diisopropyl-1H-pyrazol-5-amine (Intermediate 161; 1.03 g, 6.13 mmol) in THF (5 mL) and the mixture was stirred at rt for 15 h. The reaction mixture was quenched with satd NaHCO3 (100 mL), extracted with EtOAc (2×50 mL), washed with brine (1×50 mL), dried over Na2SO4, filtered, and concentrated in vacuo. The crude material was purified by silica gel chromatography (eluent: 0-50% EtOAc-EtOH (3:1)/heptane) to provide 2,5,6-trichloro-N-((1,4-diisopropyl-1H-pyrazol-5-yl)carbamoyl)nicotinamide (2.43 g, 5.79 mmol, 94% yield) as orange syrup. 1H NMR (400 MHz, DMSO-d6) δ 11.36 (br s, 1H), 9.39 (br s, 1H), 8.63 (s, 1H), 7.33 (s, 1H), 4.37 (dt, J=13.3, 6.6 Hz, 1H), 2.64-2.75 (m, 1H), 1.33 (d, J=6.4 Hz, 6H), 1.13 (d, J=7.0 Hz, 6H). m/z (ESI, +ve ion): 417.6 (M+H)+.
Step 2: 6,7-Dichloro-1-(1,4-diisopropyl-1H-pyrazol-5-yl)pyrido[2,3-d]pyrimidine-2,4(1H,3H)-dioneTo a cooled mixture of 2,5,6-trichloro-N-((1,4-diisopropyl-1H-pyrazol-5-yl)carbamoyl)nicotinamide (2.42 g, 5.78 mmol) in THF (19 mL) at 0° C. was added 1 M KHMDS in THF (14.5 mL, 14.5 mmol) dropwise and the mixture was stirred at 0° C. for 30 min. The mixture was quenched with satd. NH4Cl (50 mL) and brine (50 mL), extracted with EtOAc (2×50 mL), dried over Na2SO4, filtered, and concentrated in vacuo. The crude material was purified by silica gel chromatography (eluent: 0-50% EtOAc/heptane) to provide 6,7-dichloro-1-(1,4-diisopropyl-1H-pyrazol-5-yl)pyrido[2,3-d]pyrimidine-2,4(1H,3H)-dione (0.16 g, 0.41 mmol, 7% yield) as yellow syrupy solid. 1H NMR (400 MHz, DMSO-d6) δ 12.26 (br s, 1H), 8.57 (s, 1H), 7.52 (s, 1H), 4.32 (spt, J=6.6 Hz, 1H), 2.53-2.61 (m, 1H), 1.27 (d, J=6.6 Hz, 3H), 1.22 (d, J=6.4 Hz, 3H), 1.04 (d, J=6.8 Hz, 3H), 0.99 (d, J=6.8 Hz, 3H). m/z (ESI, +ve ion): 381.6 (M+H)+.
Step 3: tert-Butyl (2R,5S)-4-(6,7-dichloro-1-(1,4-diisopropyl-1H-pyrazol-5-yl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylateTo a mixture of 6,7-dichloro-1-(1,4-diisopropyl-1H-pyrazol-5-yl)pyrido[2,3-d]pyrimidine-2,4(1H,3H)-dione (0.15 g, 0.39 mmol) and DIPEA (0.34 mL, 2.0 mmol) in acetonitrile (2.0 mL) was added phosphorus oxychloride (0.070 mL, 0.79 mmol) and the mixture was stirred and heated at 80° C. for 1 h. The mixture was cooled to 0° C. To the cooled mixture was added DIPEA (0.34 mL, 1.96 mmol) followed by (2R,5S)-tert-butyl 2,5-dimethylpiperazine-1-carboxylate (0.13 g, 0.59 mmol, AstaTech Inc.) and the mixture was stirred at 0° C. for 1 h. The reaction mixture was quenched with satd NaHCO3 (50 mL), extracted with EtOAc (2×50 mL), dried over Na2SO4, filtered, and concentrated in vacuo. The crude material was purified by silica gel chromatography (eluent: 0-25% EtOAc-EtOH (3:1)/heptane) to provide tert-butyl (2R,5S)-4-(6,7-dichloro-1-(1,4-diisopropyl-1H-pyrazol-5-yl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.15 g, 0.26 mmol, 66.7% yield) as orange solid. 1H NMR (400 MHz, DMSO-d6) δ 8.44 (d, J=45.0 Hz, 1H), 7.47 (d, J=7.3 Hz, 1H), 3.33-4.89 (m, 7H), 2.38-2.47 (m, 1H), 0.94-1.47 (m, 27H). m/z (ESI, +ve ion): 577.7 (M+H)+.
Step 4: tert-Butyl (2R,5S)-4-(6-chloro-1-(1,4-diisopropyl-1H-pyrazol-5-yl)-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylateA mixture of tert-butyl (2R,5S)-4-(6,7-dichloro-1-(1,4-diisopropyl-1H-pyrazol-5-yl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.15 g, 0.25 mmol), 2-fluorophenylboronic acid (0.053 g, 0.38 mmol, Combi-Blocks Inc.), sodium carbonate (0.080 g, 0.76 mmol), tetrakis(triphenylphosphine)palladium(0) (0.029 g, 0.025 mmol, Sigma-Aldrich Corporation) in 1,4-dioxane (1 mL) and water (0.25 mL) was stirred and heated at 80° C. for 2 h. The crude material was purified by silica gel chromatography (eluent: 0-25% EtOAc-EtOH (3:1)/heptane) to provide tert-butyl (2R,5S)-4-(6-chloro-1-(1,4-diisopropyl-1H-pyrazol-5-yl)-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.16 g, 0.25 mmol, quantitative yield) as yellow syrup. 1H NMR (400 MHz, DMSO-d6) δ 8.42 (d, J=25.9 Hz, 1H), 7.49-7.66 (m, 1H), 7.21-7.41 (m, 4H), 3.35-4.90 (m, 7H), 2.39-2.47 (m, 1H), 1.45 (s, 9H), 1.09-1.39 (m, 12H), 0.98 (dd, J=9.2, 6.9 Hz, 3H), 0.93 (dd, J=6.8, 3.1 Hz, 3H). 19F NMR (376 MHz, DMSO-d6) δ −114.44-−114.14 (m, 1F). m/z (ESI, +ve ion): 638.2 (M+H)+.
Step 5: 6-Chloro-1-(2,4-diisopropylpyrazol-3-yl)-4-[(2S,5R)-2,5-dimethyl-4-prop-2-enoyl-piperazin-1-yl]-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2-oneA mixture of tert-butyl (2R,5S)-4-(6-chloro-1-(1,4-diisopropyl-1H-pyrazol-5-yl)-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.16 g, 0.25 mmol) in DCM (2.5 mL) and TFA (2.5 mL) was stirred at rt for 1 h. The mixture was concentrated in vacuo to afford 6-chloro-1-(1,4-diisopropyl-1H-pyrazol-5-yl)-4-((2S,5R)-2,5-dimethylpiperazin-1-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-one as yellow syrup. The crude product was used in next step without purification. m/z (ESI, +ve ion): 539.3 (M+H)+.
A mixture of 6-chloro-1-(1,4-diisopropyl-1H-pyrazol-5-yl)-4-((2S,5R)-2,5-dimethylpiperazin-1-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-one and DIPEA (0.66 mL, 3.78 mmol) in DCM (2.5 mL) was cooled to 0° C. To the cooled mixture was added acryloyl chloride (0.020 mL, 0.25 mmol) dropwise and the mixture was stirred at 0° C. for 10 min. The reaction mixture was quenched with satd. NH4Cl (50 mL), extracted with EtOAc (2×50 mL), washed with satd NaHCO3 (1×50 mL), dried over Na2SO4. filtered, and concentrated in vacuo. The crude material was purified by silica gel chromatography (eluent: 0-50% DCM-EtOH (4:1)/DCM) to provide 6-chloro-1-(2,4-diisopropylpyrazol-3-yl)-4-[(2S,5R)-2,5-dimethyl-4-prop-2-enoyl-piperazin-1-yl]-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2-one (0.093 g, 0.16 mmol, 63% yield) as yellow solid. 1H NMR (400 MHz, DMSO-d4) δ 8.38-8.50 (m, 1H), 7.50-7.59 (m, 1H), 7.22-7.42 (m, 4H), 6.75-6.91 (m, 1H), 6.19 (dd, J=16.8, 2.1 Hz, 1H), 5.71-5.79 (m, 1H), 4.41-4.97 (m, 2H), 3.38-4.33 (m, 5H), 2.39-2.48 (m, 1H), 1.11-1.37 (m, 12H), 0.99 (dd, J=9.4, 6.9 Hz, 3H), 0.93 (dd, J=6.9, 2.8 Hz, 3H). 19F NMR (376 MHz, DMSO-d6) δ −114.42-−114.15 (m, 1F). m/z (ESI, +ve ion): 592.3 (M+H)+.
Method 101
To a mixture of 2,6-dichloro-5-fluoronicotinamide (Intermediate S; 1.58 g, 7.57 mmol) in THF (15 mL) was added oxalyl chloride, 2 M solution in DCM (3.99 mL, 7.97 mmol) at rt and the mixture was stirred and heated at 65° C. for 1 h. The mixture was cooled to rt. To the mixture was added a solution of 3,5-diisopropylpyridin-4-amine (Intermediate 162; 1.35 g, 7.57 mmol) in THF (8 mL) and the mixture was stirred at rt for 1 h. The mixture was quenched with satd NaHCO3 (100 mL), extracted with EtOAc (3×50 mL), dried over Na2SO4, filtered, and concentrated in vacuo. The crude material was purified by silica gel chromatography (eluent: 0-40% EtOAc-EtOH (3:1)/heptane) to provide 2,6-dichloro-N-((3,5-diisopropylpyridin-4-yl)carbamoyl)-5-fluoronicotinamide (0.54 g, 1.3 mmol, 17% yield) as light-yellow solid. 1H NMR (400 MHz, DMSO-d6) δ 11.39 (br s, 1H), 9.40-9.81 (m, 1H), 8.54 (br d, J=7.9 Hz, 1H), 8.45 (s, 2H), 3.09 (spt, J=6.7 Hz, 2H), 1.22 (d, J=6.8 Hz, 12H). 19F NMR (376 MHz, DMSOd6) δ −122.48-−121.38 (m, 1F). m/z (ESI, +ve ion): 413.0 (M+H)+.
Step 2: 7-Chloro-1-(3,5-diisopropylpyridin-4-yl)-6-fluoropyrido[2,3-d]pyrimidine-2,4(1H,3H)-dioneTo a cooled mixture of 2,6-dichloro-N-((3,5-diisopropylpyridin-4-yl)carbamoyl)-5-fluoronicotinamide (0.54 g, 1.3 mmol) in THF (6 mL) at 0° C. was added 1 M KHMDS in THF (2.58 mL, 2.58 mmol) dropwise and the mixture was stirred at rt for 3 h. The mixture was quenched with satd NH4Cl (50 mL), extracted with EtOAc (3-50 mL), dried over Na2SO4, filtered, and concentrated in vacuo. The crude material was purified by silica gel chromatography (eluent: 0-25% EtOAc-EtOH (3:1)/heptane) to provide 7-chloro-1-(3,5-diisopropylpyridin-4-yl)-6-fluoropyrido[2,3-d]pyrimidine-2,4(H, 3H)-dione (0.23 g, 0.62 mmol, 48% yield) as light-yellow solid. 1H NMR (400 MHz, DMSO-d6) δ 12.28 (s, 1H), 8.62 (s, 2H), 8.50 (d, J=7.5 Hz, 1H), 2.65-2.78 (m, 2H), 1.15 (d, J=7.0 Hz, 6H), 1.03 (d, J=6.8 Hz, 6H). 19F NMR (377 MHz, DMSO-d6) δ −126.68 (s, 1F). m/z (ESI, +ve ion): 377.0 (M+H)+.
Step 3: tert-Butyl (2R,5S)-4-(7-chloro-1-(3,5-diisopropylpyridin-4-yl)-6-fluoro-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylateTo a mixture of 7-chloro-1-(3,5-diisopropylpyridin-4-yl)-6-fluoropyrido[2,3-d]pyrimidine-2,4(1H,3H)-dione (0.23 g, 0.61 mmol) and DIPEA (0.53 mL, 3.05 mmol) in acetonitrile (4 mL) was added phosphorus oxychloride (0.11 mL, 1.22 mmol) and the mixture was stirred and heated at 80° C. for 30 min. The reaction mixture was cooled to 0° C. To the cooled mixture was added DIPEA (0.53 mL, 3.05 mmol) followed by (2R,5S)-tert-butyl 2.5-dimethylpipemzine-1-carboxylate (0.2 g, 0.92 mmol, eNovation Chemicals LLC) and the mixture was stirred at rt for 2 h. The reaction mixture was quenched with satd. NaHCO3 (100 mL), extracted with EtOAc (3×50 mL), dried over Na2SO4, filtered, and concentrated in vacuo. The crude material was purified by silica gel chromatography (eluent: 0-25% EtOAc-EtOH (3:1)/heptane) to provide tert-butyl (2R,5S)-4-(7-chloro-1-(3,5-diisopropylpyridin-4-yl)-6-fluoro-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.14 g, 0.25 mmol, 40.7% yield) as orange solid. 1H NMR (400 MHz, DMSO-d6) δ 8.59 (d, J=12.6 Hz, 2H), 8.38 (d, J=8.5 Hz, 1H), 4.80 (br s, 1H), 4.14-4.40 (m, 1H), 4.03 (br d, J=13.5 Hz, 1H), 3.84 (br d, J=12.4 Hz, 1H), 3.66 (br d, J=13.3 Hz, 1H), 3.50 (br dd, J=31.9, 13.5 Hz, 1H), 2.40-2.49 (m, 2H), 1.44 (s, 9H), 1.30 (d, J=6.6 Hz, 3H), 1.08-1.15 (m, 9H), 1.04 (dd, J=17.2, 6.8 Hz, 6H). 19F NMR (376 MHz, DMSO-d6) δ −127.96 (s, 1F). m/z (ESI, +ve ion): 573.0 (M+H)+.
Step 4: tert-Butyl (2R,5S)-4-(1-(3,5-diisopropylpyridin-4-yl)-6-fluoro-7-(2-fluoro-6-hydroxyphenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylateA mixture of tert-butyl (2R,5S)-4-(7-chloro-1-(3,5-diisopropylpyridin-4-yl)-6-fluoro-2-oxo-1,2-dihydropyrido[2,34]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.13 g, 0.23 mmol), (2-fluoro-6-hydroxyphenyl)boronic acid (0.073 g, 0.47 mmol, Wuxi), potassium acetate (0.115 g, 1.17 mmol), (1,1′-bis(diphenylphosphino)ferrocene)dichloropalladium-dichloromethane (1:1) (0.019 g, 0.023 mmol, Oakwood Products, Inc.) in 1,4-dioxane (2 mL) and water (0.01 mL) was stirred and heated at 90° C. for 14 h. The crude material was purified by silica gel chromatography (eluent: 0-50% EtOAc-EtOH (3:1)/heptane) to provide tert-butyl (2R,5S)-4-(1-(3,5-diisopropylpyridin-4-yl)-6-fluoro-7-(2-fluoro-6-hydroxyphenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.054 g, 0.083 mmol, 35.5% yield) as yellow solid. 1H NMR (400 MHz, DMSO-d6) δ 10.17 (br s, 1H), 8.49 (d, J=2.9 Hz, 2H), 8.27 (d, J=9.1 Hz, 1H), 7.21-7.29 (m, 1H), 6.60-6.76 (m, 2H), 4.72-4.91 (m, 1H), 4.18-4.42 (m, 1H), 4.10 (br d, J=13.9 Hz, 1H), 3.77-3.88 (m, 1H), 3.43-3.73 (m, 2H), 2.42-2.49 (m, 2H), 1.45 (s, 9H), 0.93-1.36 (m, 18H). 19F NMR (377 MHz, DMSO-d6) δ −115.75 (br d, J=4.3 Hz, 1F), −128.53 (br s, 1F). m/z (ESI, +ve ion): 649.1 (M+H)+.
Step 5: 1-(3,5-Diisopropyl-4-pyridyl)-4-[(2S,5R)-2,5-dimethyl-4-prop-2-enoyl-piperazin-1-yl]-6-fluoro-7-(2-fluoro-6-hydroxy-phenyl)pyrido[2,3-d]pyrimidin-2-oneA mixture of tert-butyl (2R,5S)-4-(1-(3,5-diisopropylpyridin-4-yl)-6-fluoro-7-(2-fluoro-6-hydroxyphenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.052 g, 0.077 mmol) in DCM (2 mL) and TFA (2 mL) was stirred at rt for 10 min. The mixture was concentrated in vacuo to afford 1-(3,5-diisopropylpyridin-4-yl)-4-((2S,5R)-2,5-dimethylpiperazin-1-yl)-6-fluoro-7-(2-fluoro-6-hydroxyphenyl)pyrido[2,3-d]pyrimidin-2(1H)-one as orange syrup. The crude product was used in next step without purification. m/z (ESI, +ve ion): 549.0 (M+H)+.
A mixture of 1-(3,5-diisopropylpyridin-4-yl)-4-((2S,5R)-2,5-dimethylpiperazin-1-yl)-6-fluoro-7-(2-fluoro-6-hydroxyphenyl)pyrido[2,3-d]pyrimidin-2(1H)-one and DIPEA (0.2 mL, 1.16 mmol) in DCM (2 mL) was cooled to −20° C. To the cooled mixture at −20° C. was added acryloyl chloride, 0.2 M solution in DCM (0.39 mL, 0.077 mmol) dropwise and the mixture was stirred at −20° C. for 30 min. The mixture was concentrated in vacuo to afford the crude material as a yellow solid. The residue was dissolved in THF (3 mL), treated with 2 N NaOH (0.4 mL, 0.8 mmol), and stirred at it for 1 h. The reaction mixture was diluted with satd. NH4Cl (50 mL), extracted with EtOAc (3×50 mL), dried over Na2SO4, filtered, and concentrated in vacuo. The crude material was purified by silica gel chromatography (eluent 0-25% DCM-MeOH (4:1)/DCM) to provide 1-(3,5-diisopropyl-4-pyridyl)-4-[(2S,5R)-2,5-dimethyl-4-prop-2-enoyl-piperazin-1-yl]-6-fluoro-7-(2-fluoro-6-hydroxy-phenyl)pyrido[2,3-d]pyrimidin-2-one (0.024 g, 0.040 mmol, 51.7% yield) as yellow solid. 1H NMR (400 MHz, DMSO-d6) δ 10.19 (br s, 1H), 8.49 (d, J=3.1 Hz, 2H), 8.30 (d, J=9.1 Hz, 1H), 7.25 (q, J=8.1 Hz, 1H), 6.62-6.90 (m, 3H), 6.18 (dd, J=16.6, 2.3 Hz, 1H), 5.74-5.79 (m, 1H), 4.42-4.93 (m, 2H), 3.79-4.23 (m, 4H), 2.41-2.48 (m, 2H), 1.16-1.33 (m, 6H), 1.11 (dd, J=6.7, 4.5 Hz, 6H), 0.97 (br d, J=6.6 Hz, 6H). 19F NMR (377 MHz, DMSO-d6) δ −115.75 (br s, 1F), −128.46 (br s, 1F). m/z (ESI, +ve ion): 603.0 (M+H)+.
Method 102
To a solution of tert-butyl (2R,5S)-4-((2,5-dichloro-6-(2-fluorophenyl)pyridin-3-yl)(imino)methyl)-2,5-dimethylpiperazine-1-carboxylate (0.050 g, 0.10 mmol, Intermediate 165) and DIEA (0.038 mL, 0.22 mmol) in THF (5 mL) was added phosgene solution, 15% in toluene (0.078 mL, 0.11 mmol) at 0° C. This solution was stirred for 10 min followed by addition of a solution of 2,6-diisopropylaniline (0.022 g, 0.13 mmol, Intermediate 193) in THF (1 mL) at 0° C. The resulting mixture was stirred at room temp for 15 min at which point LC-MS analysis indicated consumption of starting material and the presence of tert-butyl (2R,5S)-4-((2,5-dichloro-6-(2-fluorophenyl)pyridin-3-yl)(((2,6-diisopropylphenyl)carbamoyl)imino)methyl)-2,5-dimethylpiperazine-1-carboxylate. The reaction was diluted with EtOAc (20 mL) and quenched with saturated aqueous NaHCO3. The layers were partitioned and the organic phase was dried over anhydrous MgSO4, filtered, and concentrated under reduced pressure. m/z (ESI, +ve ion): 683.6 (M+H)+.
Step 2: tert-Butyl (2R,5S)-4-(6-chloro-1-(2,6-diisopropylphenyl)-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylatetert-Butyl (2R,5S)-4-((2,5-dichloro-6-(2-fluorophenyl)pyridin-3-yl)(((2,6-diisopropylphenyl)carbamoyl)imino)methyl)-2,5-dimethylpiperazine-1-carboxylate was re-dissolved in THF (3 mL) and toluene (3 mL). The resulting solution was cooled to 0° C. followed by addition of sodium tert-butoxide (0.015 mg, 0.156 μmol). The reaction was stirred at this temperature for 40 min, diluted with EtOAc, and washed with sat. aqueous NaHCO3. The combined organics were purified by chromatography on silica gel using 0-40% EtOAc in heptane to afford tert-butyl (2R,5S)-4-(6-chloro-1-(2,6-diisopropylphenyl)-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.029 g, 0.045 mmol, 43.3% yield) as a yellow solid. m/z (ESI, +ve ion): 648.2 (M+H)+.
Step 3: 4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-1-(2,6-diisopropylphenyl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-oneTo a solution of tert-butyl (2R,5S)-4-(6-chloro-1-(2,6-diisopropylphenyl)-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.029 g, 0.045 mmol) in DCM (3 mL) was added tfa (2.0 mL, 26.0 mmol) and the resulting mixture was stirred at rt for 30 min. The reaction went to completion and concentrated to afford
6-chloro-1-(2,6-diisopropylphenyl)-4-((2S,5R)-2,5-dimethylpiperazin-1-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(H)-one which was dissolved in DCM (3 mL) then acryloyl chloride (3.27 μl, 0.040 mmol) was added at rt. The reaction was stirred at rt for 15 min, washed with sat. NaHCO3 and extracted with DCM. The combined organics were purified by HPLC to afford 4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-1-(2,6-diisopropylphenyl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(H)-one (0.010 g, 8.30 μmol, 18.56% yield) as a light yellow solid. 1H NMR (400 MHz, DMSO-d6) δ 8.46 (s, 1H), 7.43-7.57 (m, 1H), 7.12-7.36 (m, 6H), 6.75-6.94 (m, 1H), 6.19 (dd, J=16.7, 2.4 Hz, 1H), 5.67-5.85 (m, 1H), 4.69-4.96 (m, 2H), 4.39-4.52 (in, 1H), 4.14 (br t, J=11.9 Hz, 1H), 3.78-3.99 (m, 2H), 3.44-3.62 (m, 1H), 1.30-1.37 (m, 3H), 1.25 (br d, J=6.4 Hz, 2H), 1.17 (d, J=6.8 Hz, 2H), 1.03-1.10 (m, 6H), 0.92 (dd, J=10.0, 6.8 Hz, 6H), 601.6 (M+H)+.
Method 103
To a stirring solution of 3-isopropyl-N1,N1-dimethylbenzene-1,2-diamine (282 mg, 1.583 mmol, Intermediate 163) and DIEA (580 μl, 3.32 mmol) in THF (6 mL; 20:1 mL) at 20° C. was added a phosgene solution, 15% in toluene (1248 μl, 1.741 mmol) dropwise. A precipitate formed and the resulting mixture was stirred at 20° C. for 15 min then chilled to 0° C. Once chilled, solid tert-butyl (2R,5S)-4-((2,5-dichloro-6-(2-isopropylphenyl)pyridin-3-yl)(imino)methyl)-2,5-dimethylpiperazine-1-carboxylate (800 mg, 1.583 mmol, Intermediate 170) was added in one portion. The ice bath was removed and stirred for a total of 45 min at 20° C. The reaction was returned to 0° C. a sodium tert-butoxide solution, 2.0 M in THF (2374 μl, 4.75 mmol) was added, and then the ice bath removed. After 30 min, the reaction was partitioned between EtOAc (60 mL) and sat. NaHCO3 (20 mL). The organic was further washed with sat. NaCl (10 mL), dried over MgSO4, concentrated under reduced pressure, then purified by silica gel chromatography (40 g) eluting products with a gradient of 10>35% EtOAc/EtOH (3:1 blend)/heptane to afford tert-butyl (2R,5S)-4-(6-chloro-1-(4-(dimethylamino)-2-isopropylpyridin-3-yl)-7-(2-isopropylphenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate as white foam. m/z (ESI, +ve ion): 674.5 (M+H)+.
124611-28
Step 2: 4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-1-(4-(dimethylamino)-2-isopropylpyridin-3-yl)-7-(2-isopropylphenyl)pyrido[2,3-d]pyrimidin-2(1H)-oneA solution of tert-butyl (2R,5S)-4-(6-chloro-1-(4-(dimethylamino)-2-isopropylpyridin-3-yl)-7-(2-isopropylphenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (760 mg, 1.127 mmol) was stirred in TFA (3 mL) at 20° C. for 30 min. The solvent was then removed under reduced pressure followed by an azeotrope with heptane (30 mL). The residue was then partitioned between EtOAc (30 mL) and 5% Na2CO3 (20 mL). The separated organic was washed with sat. NaCl (10 mL), dried over MgSO4, then concentrated under reduced pressure to afford the intermediate. To the material was added DCM (10 mL) and DIEA (394 μl, 2.254 mmol), and the solution was chilled to 0° C. To this solution was added a second solution of acryloyl chloride (92 μl, 1.127 mmol) in DCM (3 mL) was dropwise over a period of 1 min. The reaction was then directly purified by silica gel chromatography (40 g) eluting products with a gradient of 0>70% EtOAc/EtOH (3:1 blend)/heptane to afford 4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-1-(4-(dimethylamino)-2-isopropylpyridin-3-yl)-7-(2-isopropylphenyl)pyrido[2,3-d]pyrimidin-2(1H)-one as white foam. m/z (ESI, +ve ion): 628.3 (M+H)+.
Method 106
To a 250-mL round-bottomed flask was added 2,5-dichloro-6-(2-fluorophenyl)nicotinamide (2.95 g, 9.73 mmol, Intermediate 99B) and oxalyl chloride (7.29 mL, 14.59 mmol) in tetrahydrofuran (32.4 mL). The flask was fitted with a reflux condensor, and the mixture was stirred and heated at 80° C. for 45 min. The reaction mixture was concentrated in vacuo. The crude mixture was carried on without further purification.
To a 150-mL round-bottomed flask was added the crude (2,5-dichloro-6-(2-fluorophenyl)nicotinoyl)carbamoyl isocyanate from above in tetrahydrofuran (32.4 mL). The mixture was cooled to −10° C. before a solution of 2-bromo-4,6-diisopropylpyrimidin-5-amine (2.89 g, 11.19 mmol, Intermediate I-38) in THF (3 mL) was added. The reaction mixture was allowed to stir under an inert (N2) atmosphere for 1 h. The reaction mixture was concentrated in vacuo. The crude material was triturated with EtOAc and heptane, and the solids were collected by filtration. The solids were washed with heptane to afford N-((2-bromo-4,6-diisopropylpyrimidin-5-yl)carbamoyl)-2,5-dichloro-6-(2-fluorophenyl)nicotinamide as a tan solid (4.500 g, 7.91 mmol, 81% yield). 1H NMR (400 MHz, DMSO-d6) δ 11.48 (s, 1H) 9.74 (br s, 1H) 8.62 (s, 1H) 7.55-7.64 (m, 2H) 7.37-7.42 (m, 2H) 3.21-3.30 (m, 2H) 1.16-1.19 (m, 12H). m/z (ESI, +ve ion): 568.0 (M+H)+.
Step 2: 1-(2-Bromo-4,6-diisopropylpyrimidin-5-yl)-6-chloro-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidine-2,4(1,3H)-dione (Intermediate 231)To a 250-mL round-bottomed flask was added N-((2-bromo-4,6-diisopropylpyrimidin-5-yl)carbamoyl)-2,5-dichloro-6-(2-fluorophenyl)nicotinamide (4.790 g, 8.41 mmol) in tetrahydrofuran (42.1 mL). Potassium bis(trimethylsilyl)amide (1.0 M solution in tetrahydrofuran, 10.52 mL, 10.52 mmol) was added dropwise via addition funnel into the reaction mixture over 5 min. The reaction mixture was allowed to stir under an inert (N2) atmosphere for 10 min. Additional potassium bis(trimethylsilyl)amide (0.5 eq; 5.5 mL) was added dropwise into the reaction mixture. The reaction mixture was quenched with sat. aq. NH4Cl (50 mL), then the mixture was diluted with 3:1 EtOAc/MeOH and brine solution. The layers were separated and the aqueous layer was extracted with EtOAc. The combined organic extracts were dried over MgSO4, filtered and concentrated in vacuo. The crude was triturated with EtOAc and heptane. The solids were washed with heptane and allowed to dry in a reduced-pressure oven (40° C.) for 1 h to afford 1-(2-bromo-4,6-diisopropylpyrimidin-5-yl)-6-chloro-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidine-2,4(1H,3H)-dione as a tan solid (4.26 g, 7.99 mmol, 95% yield, Intermediate 231). 1H NMR (400 MHz, DMSO-d6) δ 11.83-12.28 (m, 1H) 8.57 (s, 1H) 7.50-7.56 (m, 1H) 7.31 (d, J=7.88 Hz, 2H) 7.18-7.23 (m, 1H) 2.94-3.02 (m, 2H) 1.08 (d, J=6.63 Hz, 6H) 0.91 (d, J=6.63 Hz, 6H). m/z (ESI, +ve ion): 532.0 (M+H)+.
Step 3: tert-Butyl (2R,5S)-4-(1-(2-bromo-4,6-diisopropylpyrimidin-5-yl)-6-chloro-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (Intermediate 232)Phosphorus (V) oxychloride (0.237 mL, 2.54 mmol) was added to a stirred mixture of 1-(2-bromo-4,6-diisopropylpyrimidin-5-yl)-6-chloro-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidine-2,4(1H,3H)-dione (1.04 g, 1.952 mmol, Intermediate 231) and N,N-diisopropylethylamine (0.477 mL, 2.73 mmol) in acetonitrile (8 mL). The reaction mixture was stirred at 80° C. for 40 min before being cooled to room temperature. Additional N,N-diisopropylethylamine (0.477 mL, 2.73 mmol) was added followed by (2R,5S)-tert-butyl 2,5-dimethylpiperazine-1-carboxylate (0.418 mL, 1.952 mmol). The reaction mixture was stirred at room temperature for 25 min. The reaction was quenched with water (150 mL) and extracted with EtOAc (200 mL). The organic layer was separated, washed with saturated sodium chloride (150 mL), dried over MgSO4, filtered, and concentrated in vacuo. The crude product was purified by silica gel chromatography (eluent 0-30% [(3:1) EtOAc/EtOH]/heptane) to provide tert-butyl (2R,5S)-4-(1-(2-bromo-4,6-diisopropylpyrimidin-5-yl)-6-chloro-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate as a white solid (1.10 g, 1.509 mmol, 77% yield, Intermediate 232). 1H NMR (400 MHz, CHLOROFORM-d) δ 8.17 (1H, s) 7.48-7.54 (1H, m) 7.15-7.28 (3H, m) 3.49-5.08 (61H, m) 2.62-2.72 (2H, m) 1.56 (91H, s) 1.50-1.55 (3H, m) 1.30-1.36 (3H, m) 1.26 (6H, dd, J=6.63, 3.32 Hz) 1.06 (6H, t, J=6.84 Hz). m/z (ESI, +ve ion): 728.0 (M+H)+.
Step 4: 4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-1-(2-bromo-4,6-diisopropylpyrimidin-5-yl)-6-chloro-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-oneTrifluoroacetic acid (1.00 mL, 13.42 mmol) was added to a stirred solution of tert-butyl (2R,5S)-4-(1-(2-bromo-4,6-diisopropylpyrimidin-5-yl)-6-chloro-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (300 mg, 0.411 mmol) in dichloromethane (2 mL). The reaction mixture was stirred at room temperature for 20 min. The reaction mixture was concentrated in vacuo to provide crude 1-(2-bromo-4,6-diisopropylpyrimidin-5-yl)-6-chloro-4-((2S,5R)-2,5-dimethylpiperazin-1-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(H)-one that was used without purification assuming 100% yield.
Acryloyl chloride (1.1 M in DCM, 0.487 mL, 0.535 mmol) was added to a stirred mixture of the crude 1-(2-bromo-4,6-diisopropylpyrimidin-5-yl)-6-chloro-4-((2S,5R)-2,5-dimethylpiperazin-1-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-one (259 mg, 0.412 mmol) and N,N-diisopropylethylamine (0.360 mL, 2.059 mmol) in dichloromethane (2 mL). The reaction mixture was stirred at room temperature for 30 min. The reaction mixture was diluted with DCM (60 mL) and washed with saturated aqueous NH4Cl (50 mL). The organic layer was separated, dried over MgSO4, filtered, and concentrated in vacuo. The crude product was purified by silica gel chromatography (eluent 0-50% [(3:1) EtOAc/EtOH]/heptane) to provide 4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-1-(2-bromo-4,6-diisopropylpyrimidin-5-yl)-6-chloro-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-one as a white solid (241 mg, 0.353 mmol, 86% yield). 1H NMR (400 MHz, CHLOROFORM-d) δ 8.17 (H, s) 7.48-7.54 (1H, m) 7.16-7.28 (3H, m) 6.56-6.74 (1H, m) 6.40-6.49 (1H, m) 5.82-5.88 (1H, m) 3.49-5.23 (6H, m) 2.60-2.72 (2H, m) 1.44-1.56 (3H, m) 1.29-1.40 (3H, m) 1.23-1.29 (6H, m) 1.03-1.09 (6H, m). m/z (ESI, +ve ion): 682.0 (M+H)+.
Method 107
Methylamine (2.0 M in tetrahydrofuran, 0.312 mL, 0.624 mmol) was added to a stirred solution of tert-butyl (2R,5S)-4-(1-(2-bromo-4,6-diisopropylpyrimidin-5-yl)-6-chloro-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,34]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (91 mg, 0.125 mmol, Intermediate 232) in acetonitrile (0.5 mL). The reaction mixture was stirred at room temperature for 9 h. The reaction mixture was concentrated in vacuo. The crude product was purified by silica gel chromatography (eluent 0-50% [(3:1) EtOAc/EtOH]/heptane) to provide tert-butyl (2R,5S)-4-(6-chloro-1-(4,6-diisopropyl-2-(methylamino)pyrimidin-5-yl)-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate as a yellow solid (45 mg, 0.066 mmol, 53.1% yield). 1H NMR (400 MHz, CHLOROFORM-d) δ 8.13 (1H, s) 7.45-7.52 (1H, m) 7.21-7.29 (2H, m) 7.14-7.20 (1H, m) 3.53-5.12 (7H, m) 3.05 (3H, d, J=4.98 Hz) 2.49-2.61 (2H, m) 1.57 (9H, s) 1.44-1.54 (3H, m) 1.30-1.36 (3H, m) 1.21 (3H, dd, J=6.34, 4.25 Hz) 1.01 (6H br t, J=7.26 Hz). m/z (ESI, +ve ion): 679.1 (M+H)+.
Step 2: 4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-1-(4,6-diisopropyl-2-(methylamino)pyrimidin-5-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-oneTrifluoroacetic acid (0.5 mL, 6.71 mmol) was added to a stirred solution of tert-butyl (2R,5S)-4-(6-chloro-1-(4,6-diisopropyl-2-(methylamino)pyrimidin-5-yl)-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (45 mg, 0.066 mmol) in dichloromethane (1 mL). The reaction mixture was stirred at room temperature for 25 min. The reaction mixture was concentrated in vacuo to give crude 6-chloro-1-(4,6-diisopropyl-2-(methylamino)pyrimidin-5-yl)-4-((2S,5R)-2,5-dimethylpiperazin-1-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-one that was used without purification assuming 100% yield.
Acryloyl chloride (1.1 M in DCM, 0.072 mL, 0.079 mmol) was added to a stirred mixture of the crude 6-chloro-1-(4,6-diisopropyl-2-(methylamino)pyrimidin-5-yl)-4-((2S,5R)-2,5-dimethylpiperazin-1-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(H)-one (38 mg, 0.066 mmol) and N,N-diisopropylethylamine (0.046 mL, 0.262 mmol) in dichloromethane (0.5 mL). The reaction mixture was stirred at room temperature for 1 h. The reaction mixture was diluted with DCM (40 mL) and washed with saturated aqueous NH4Cl (30 mL). The organic layer was separated, dried over MgSO4, filtered, and concentrated in vacuo. The crude product was purified by silica gel chromatography (eluent 0-50% [(3:1) EtOAc/EtOH]/heptane) to provide 4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-1-(4,6-diisopropyl-2-(methylamino)pyrimidin-5-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(H)-one as a light yellow solid (33 mg, 0.052 mmol, 79% yield). 1H NMR (400 MHz, CHLOROFORM-d) δ 8.15 (1H, brs) 7.47-7.54 (1H, m) 7.16-7.29 (3H, m) 6.59-6.76 (1H, m) 6.42-6.51 (1H, m) 5.84-5.90 (1H, m) 3.53-5.24 (6H, m) 3.07 (3H, d, J=4.80 Hz) 2.50-2.63 (2H, m) 1.46-1.54 (3H, m) 1.32-1.42 (3H, m) 1.19-1.28 (6H, m) 0.98-1.09 (6H, m). m/z (ESI, +ve ion): 633.2 (M+H)+.
Method 108
Cyclopropylzinc bromide (0.5 M in THF, 3.819 mL, 1.910 mmol) was added to a flask charged with tert-butyl (2R,5S)-4-(6-chloro-1-(4-chloro-6-isopropylpyrimidin-5-yl)-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (409 mg, 0.637 mmol, Intermediate 175) and Xantphos Pd G3 (60.4 mg, 0.064 mmol) under an argon atmosphere. The reaction mixture was stirred at room temperature for 2 h. The reaction mixture was quenched with saturated aqueous NH4Cl (75 mL) and extracted with EtOAc (125 ml). The organic layer was separated, washed with saturated aqueous sodium chloride (75 mL), dried over MgSO4, filtered, and concentrated in vacuo. The crude product was purified by silica gel chromatography (eluent 0-50% [(3:1) EtOAc/EtOH]/heptane) to provide tert-butyl (2R,5S)-4-(6-chloro-1-(4-cyclopropyl-6-isopropylpyrimidin-5-yl)-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate as an off-white solid (297 mg, 0.458 mmol, 72.0% yield). 1H NMR (400 MHz, CHLOROFORM-d) δ 8.96 (1H, s) 8.10-8.14 (1H, m) 7.40-7.47 (1H, m) 7.09-7.25 (3H, m) 3.45-5.09 (6H, m) 2.71-2.81 (1H, m) 1.42-1.60 (13H, m) 1.22-1.32 (6H, m) 1.02-1.14 (4H, m) 0.91-1.00 (1H, m) 0.78-0.86 (1H, m). m/z (ESI, +ve ion): 648.0 (M+H)+.
Step 2: 4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-1-(4-cyclopropyl-6-isopropylpyrimidin-5-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-oneTrifluoroacetic acid (1.00 mL, 13.42 mmol) was added to a stirred solution of tert-butyl (2R,5S)-4-(6-chloro-1-(4-cyclopropyl-6-isopropylpyrimidin-5-yl)-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (297 mg, 0.458 mmol) in dichloromethane (1 mL). The reaction mixture was stirred at room temperature for 40 min. The reaction mixture was concentrated in vacuo to give crude 6-chloro-1-(4-cyclopropyl-6-isopropylpyrimidin-5-yl)-4-((2S,5R)-2,5-dimethylpiperazin-1-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-one that was used without purification assuming 100% yield.
Acryloyl chloride (1.1 M in DCM, 0.500 mL, 0.550 mmol) was added to a stirred mixture of the crude 6-chloro-1-(4-cyclopropyl-6-isopropylpyrimidin-5-yl)-4-((2S,5R)-2,5-dimethylpiperazin-1-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-one (251 mg, 0.458 mmol) and N,N-diisopropylethylamine (0.400 mL, 2.290 mmol) in dichloromethane (2 mL). The reaction mixture was stirred at room temperature for 30 min. The reaction mixture was diluted with DCM (100 mL) and washed with saturated aqueous NaHCO3 (75 mL). The organic layer was separated, dried over MgSO4, filtered, and concentrated in vacuo. The crude product was purified by silica gel chromatography (eluent 0-50% [(3:1) EtOAc/EtOH]/heptane) to provide 4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-1-(4-cyclopropyl-6-isopropylpyrimidin-5-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-one as an off-white solid (220 mg, 0.183 mmol, 80% yield). 1H NMR (400 MHz, CHLOROFORM-d) δ 9.01-9.03 (1H, m) 8.16-8.19 (1H, m) 7.46-7.52 (1H, m) 7.14-7.30 (3H, m) 6.58-6.74 (1H, m) 6.46 (1H, br t, J=15.03 Hz) 5.83-5.89 (1H, m) 3.49-5.27 (6H, m) 2.75-2.86 (1H, m) 1.44-1.63 (5H, m) 1.27-1.41 (6H, m) 1.07-1.20 (4H, m) 0.96-1.06 (1H, m) 0.84-0.95 (1H, m). m/z (ESI, +ve ion): 602.0 (M+H)+.
Method 109
Triethylaluminum (1.0 M in heptane, 0.934 mL, 0.934 mmol) was added to a stirred mixture of tert-butyl (2R,5S)-4-(6-chloro-1-(4-chloro-6-isopropylpyrimidin-5-yl)-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (400 mg, 0.623 mmol, Intermediate 175) and tetrakis(triphenylphosphine) palladium (71.9 mg, 0.062 mmol) in tetrahydrofuran (3 mL) under an argon atmosphere. The reaction mixture was stirred at 70° C. for 22 h. The reaction mixture was quenched with saturated aqueous NaHCO3 (50 mL) and extracted with EtOAc (75 mL). The organic layer was separated, washed with saturated aqueous sodium chloride (50 mL), dried over MgSO4, filtered, and concentrated in vacuo to provide crude tert-butyl (2R,5S)-4-(6-chloro-1-(4-ethyl-6-isopropylpyrimidin-5-yl)-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate as a brown solid. m/z (ESI, +ve ion): 636.1 (M+H)+. The crude product contained a large amount of the des-Boc product and was used without purification assuming 100% yield.
Step 2: 4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-1-(4-ethyl-6-isopropylpyrimidin-5-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-oneTrifluoroacetic acid (2 mL, 26.8 mmol) was added to a stirred solution of the crude tert-butyl (2R,5S)-4-(6-chloro-1-(4-ethyl-6-isopropylpyrimidin-5-yl)-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (396 mg, 0.622 mmol) in dichloromethane (2 mL). The reaction mixture was stirred at room temperature for 25 min. The reaction mixture was concentrated in vacuo to provide crude 6-chloro-4-((2S,5R)-2,5-dimethylpiperazin-1-yl)-1-(4-ethyl-6-isopropylpyrimidin-5-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-one (124607-19-1) that was used without purification assuming 100% yield.
Acryloyl chloride (1.1 M in DCM, 0.680 mL, 0.748 mmol) was added to a stirred mixture of the crude 6-chloro-4-((2S,5R)-2,5-dimethylpiperazin-1-yl)-1-(4-ethyl-6-isopropylpyrimidin-5-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-one (334 mg, 0.623 mmol) and N,N-diisopropylethylamine (0.544 mL, 3.12 mmol) in dichloromethane (2 mL). The reaction mixture was stirred at room temperature for 30 min. The reaction mixture was diluted with DCM (75 mL) and washed with saturated aqueous NH4Cl (50 mL). The organic layer was separated, dried over MgSO4, filtered, and concentrated in vacuo. The crude product was purified by silica gel chromatography (eluent 0-70% [(3:1) EtOAc/EtOH]/heptane) to provide 4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-1-(4-ethyl-6-isopropylpyrimidin-5-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-one as a light yellow solid (231 mg, 0.196 mmol, 62.8% yield). 1H NMR (400 MHz, CHLOROFORM-d) δ 9.11 (1H, s) 8.10-8.14 (1H, m) 7.40-7.47 (1H, m) 7.08-7.20 (3H, m) 6.51-6.70 (1H, m) 6.41 (1H, br t, J=14.93 Hz) 5.77-5.85 (1H, m) 3.44-5.21 (6H, m) 2.65-2.77 (1H, m) 2.48-2.59 (1H, m) 2.36-2.49 (1H, m) 1.40-1.52 (4H, m) 1.30-1.36 (2H, m) 1.14-1.28 (6H, m) 1.02-1.09 (3H, m). m/z (ESI, +ve ion): 590.2 (M+H)+.
Method 110
A mixture of tert-butyl (2R,5S)-4-((2,5-dichloro-6-(2-fluorophenyl)pyridin-3-yl)(imino)methyl)-2,5-dimethylpiperazine-1-carboxylate (Intermediate 165, 1.30 g, 2.70 mmol) and neopentylamine (1.27 mL, 10.80 mmol) was heated at 110° C. for 3 days. The reaction mixture was purified on silica gel chromatography using 0-5% MeOH in DCM to afford tert-butyl (2R,5S)-4-((5-chloro-6-(2-fluorophenyl)-2-(neopentylamino)pyridin-3-yl)(imino)methyl)-2,5-dimethylpiperazine-1-carboxylate (1.10 g, 2.07 mmol, 77.0% yield). m/z (ESI, +ve ion): 532.3 (M+H)+.
Step 2: tert-Butyl (2R,5S)-4-(6-chloro-7-(2-fluorophenyl)-1-neopentyl-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylateA solution of tert-butyl (2R,5S)-4-((5-chloro-6-(2-fluorophenyl)-2-(neopentylamino)pyridin-3-yl)(imino)methyl)-2,5-dimethylpiperazine-1-carboxylate (0.065 g, 0.122 mmol) and 1,1′-carbonyldiimidazole (0.040 g, 0.244 mmol) in THF (1.0 mL) was stirred at 100° C. for 2 hours. The reaction was concentrated and residue purified on silica gel chromatography using 0-60% EtOAc/EtOH (3:1) in heptane to afford tert-butyl (2R,5S)-4-(6-chloro-7-(2-fluorophenyl)-1-neopentyl-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.064 g, 0.115 mmol, 94% yield). m/z (ESI, +ve ion): 558.4 (M+H)+.
Step 3: 4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-7-(2-fluorophenyl)-1-neopentylpyrido[2,3-d]pyrimidin-2(1H)-oneTFA (0.160 mL, 2.150 mmol) was added to a solution of tert-butyl (2R,5S)-4-(6-chloro-7-(2-fluorophenyl)-1-neopentyl-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.060 g, 0.108 mmol) in DCM (4 mL). The resulting mixture was stirred at r.t. for 1 h and then concentrated under reduced pressure. The residue was suspended in DCM (4 mL), cooled to 0° C., and treated with DIPEA (0.056 mL, 0.323 mmol) followed by acryloyl chloride (0.013 mL, 0.161 mmol). The reaction was warmed to r.t. and stirred for 10 min. The mixture was quenched with sat'd aqueous NaHCO3 and extracted with DCM (2×). The combined organic layers were concentrated and the residue purified on silica gel using 0-50% EtOAc/EtOH (3:1) in heptane to provide 4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-7-(2-fluorophenyl)-1-neopentylpyrido[2,3-d]pyrimidin-2(1H)-one (0.048 g, 0.094 mmol, 87% yield). 1H NMR (400 MHz, DMSO-d6) δ 8.33 (s, 1H), 7.53-7.65 (m, 2H), 7.37-7.46 (m, 2H), 6.76-6.87 (m, 1H), 6.09-6.25 (m, 1H), 5.76 (s, 1H), 4.37-4.88 (m, 2H), 4.19-4.30 (m, 1H), 4.03-4.18 (m, 2H), 3.72-3.93 (m, 2H), 3.45 (br d, J=12.02 Hz, 1H), 1.23-1.31 (m, 3H), 1.08-1.21 (m, 3H), 0.88 (s, 9H). 19F NMR (376 MHz, DMSO-d6) δ −113.60 (s, 1F). m/z (ESI, +ve ion): 512.3 (M+H)+.
Method 119
4-((2S,5R)-4-(But-2-ynoyl)-2,5-dimethylpiperazin-1-yl)-6-fluoro-7-(2-fluorophenyl)-1-(2-isopropyl-4-methylpyridin-3-yl)pyrido[2,3-d]pyrimidin-2(1H)-one. To tert-butyl (2R,5S)-4-(6-fluoro-7-(2-fluorophenyl)-1-(2-isopropyl-4-methylpyridin-3-yl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (Intermediate 185, 0.12 g, 0.2 mmol) dissolved in dichloromethane (0.9 mL) was added trifluoroacetic acid (0.3 mL, 4.0 mmol). The reaction mixture was stirred at RT for 30 min. The solvent was removed in vacuo and to the residue was added DCM (1 mL), 1,1′-dimethyltriethylamine (0.13 mL, 0.73 mmol), [(dimethylamino)([1,2,3]triazolo[4,5-b]pyridin-3-yloxy))methylidene]dimethylazanium hexafluorophosphate (0.12 mL, 0.30 mmol), and 2-butynoic acid (20 mg, 0.24 mmol). The reaction mixture was stirred at RT for 3 h. The reaction mixture was partitioned between DCM and brine. The aqueous layer was extracted with DCM (2×). The organic layer was dried over anhydrous sodium sulfate, filtered and concentrated. The crude material was purified by chromatography through an ISCO 12 Gold column, eluting with a gradient of 0% to 45% 3:1 EtOAc/EtOH in heptane, to provide 4-((2S,5R)-4-(but-2-ynoyl)-2,5-dimethylpiperazin-1-yl)-6-fluoro-7-(2-fluorophenyl)-1-(2-isopropyl-4-methylpyridin-3-yl)pyrido[2,3-d]pyrimidin-2(1H)-one (44 mg, 0.077 mmol, 38% yield) as off-white solid. m/z (ESI, +ve ion): 571.3 (M+H)+. 1H NMR (400 MHz, CHLOROFORM-d) δ 8.57 (d, J=4.98 Hz, 1H), 7.84 (dd, J=4.15, 8.91 Hz, 1H), 7.40-7.51 (m, 1H), 7.27-7.30 (m, 1H), 7.08-7.23 (m, 3H), 4.79-5.12 (m, 2H), 4.06-4.41 (m, 2H), 3.41-3.92 (m, 2H), 2.76 (dt, J=5.08, 6.58 Hz, 1H), 2.08-2.10 (m, 3H), 2.04-2.06 (m, 3H), 1.42 (t, J=7.26 Hz, 3H), 1.24-1.3 (m, 6H), 1.11 (dd, J=2.07, 6.84 Hz, 3H). 19F NMR (376 MHz, CHLOROFORM-d) δ −112.58 (dd, J=16.04, 40.31 Hz, 1F), −126.38 (br dd, J=26.44, 40.31 Hz, 1F).
Method 121
To a solution of tert-butyl (2R,5S)-4-((2,5-dichloro-6-(2-fluorophenyl)pyridin-3-yl)(imino)methyl)-2,5-dimethylpiperazine-1-carboxylate (Intermediate 165, 460 mg, 0.96 mmol) and DIEA (350 μl, 2.01 mmol) in THF (2 mL) cooled to 0° C. was added phosgene solution, 15% in toluene (716 μl, 1.00 mmol) dropwise. This solution was stirred for 10 min followed by addition of a solution of 6-((dimethylamino)methyl)-2-isopropyl-4-methylpyridin-3-amine (Intermediate 187, 238 mg, 1.15 mmol) in THF (2 mL) at 0° C. The resulting mixture was stirred at rt for 15 min.
The reaction mixture was partitioned between EtOAc and sat. NaHCO3. The organic was dried over Na2SO4, concentrated then re-dissolved in DMF (4 mL) and treated with cesium carbonate (311 mg, 0.956 mmol). The reaction mixture was heated in a 80° C. oil bath for 30 min. The reaction mixture was then partitioned between EtOAc and brine, the organic was dried over Na2SO4, and concentrated under reduced pressure. The crude material was purified by chromatography through a Biotage pre-packed silica gel column (40S), eluting with a gradient of 0% to 100% 3:1 EtOAc/EtOH, then with 20% MeOH in DCM to give tert-butyl (2R,5S)-4-(6-chloro-1-(6-((dimethylamino)methyl)-2-isopropyl-4-methylpyridin-3-yl)-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (62 mg, 0.092 mmol, 9.6% yield) as off-white solid. m/z (ESI, +ve ion): 678.3 (M+H)+.
Step 3&4. 4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-1-chloro-1-(6-((dimethylamino)methyl)-2-isopropyl-4-methylpyridin-3-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-oneA RBF was loaded with crude tert-butyl (2R,5S)-4-(6-chloro-1-(6-((dimethylamino)methyl)-2-isopropyl-4-methylpyridin-3-yl)-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (62 mg, 0.091 mmol) and dichloromethane (0.5 ml). Trifluoroacetic acid (136 μl, 1.83 mmol) was added dropwise. After stirring at rt 30 min, the reaction mixture was concentrated in vacuo and the residue was re-dissolved in dichloromethane (0.5 ml). 1,1′-Dimethyltriethylamine (80 μl, 0.46 mmol) was added followed by dropwise addition of acryloyl chloride (100 μl, 0.11 mmol) at 0° C. The reaction was stirred at 0° C. for 30 min and the reaction mixture was purified using a RediSep Gold (12 g) column and an eluent gradient of 0-20% 5% 2N NH3 in MeOH/MeOH in DCM to give 4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-1-(6-((dimethylamino)methyl)-2-isopropyl-4-methylpyridin-3-yl)-7-(2-fluorophenyl)pyrido[2,3d]pyrimidin-2(1H)-one (9.5 mg, 16%) as white solid. m/z (ESI, +ve ion): 632.4 (M+H)+. 1H NMR (400 MHz, CHLOROFORM-d) δ 8.15 (s, 1H), 7.79-8.04 (m, 1H), 7.40-7.49 (m, 1H), 7.08-7.22 (m, 3H), 6.32-6.72 (m, 2H), 5.72-5.94 (m, 1H), 4.96-5.19 (m, 1H), 4.5-4.76 (m, 1H), 3.58-4.49 (m, 4H), 3.09 (dq, J=4.35, 7.39 Hz, 1H), 2.76-3.01 (m, 6H), 2.16 (br s, 2H), 1.53-1.55 (m, 3H), 1.44-1.48 (m, 3H), 1.33 (br d, J=6.84 Hz, 6H), 1.14-1.21 (m, 3H). 19F NMR (376 MHz, CHLOROFORM-d) δ −112.77 (br dd, J=7.37, 11.70 Hz, 1F).
Method 122
To a solution of 4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-7-(2-amino-6-fluorophenyl)-6-chloro-1-(4-(dimethylamino)-2-isopropylpyridin-3-yl)pyrido[2,3-d]pyrimidin-2(1H)-one (0.050 g, 0.081 mmol, Example 55-54) in DCM (3 mL) was added trifluoroacetic anhydride (10.27 μl, 0.073 mmol) and the resulting mixture was stirred at it for 15 min. The reaction went to completion, concentrated and purified by HPLC to afford N-(2-(4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-1-(4-(dimethylamino)-2-isopropylpyridin-3-yl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-7-yl)-3-fluorophenyl)-2,2,2-trifluoroacetamide (0.0432 g, 0.030 mmol, 37.4% yield) as a yellow solid. 1H NMR (400 MHz, DMSO-d6) δ 8.59 (s, 1H), 8.07-8.18 (m, 1H), 7.59 (br dd, J=7.8, 6.5 Hz, 1H), 7.37 (br d, J=8.9 Hz, 1H), 7.17-7.30 (m, 1H), 6.84 (dt, J=16.7, 10.7 Hz, 1H), 6.57-6.72 (m, 1H), 6.19 (dd, J=16.5, 2.2 Hz, 1H), 5.74 (br d, J=2.3 Hz, 1H), 4.81-5.05 (m, 1H), 4.66-4.76 (m, 1H), 4.45-4.57 (m, 1H), 4.04-4.29 (m, 2H), 3.67-3.79 (m, 1H), 2.72 (s, 7H), 1.21-1.31 (m, 4H), 1.00-1.12 (m, 3H), 0.92 (br dd, J=6.6, 2.5 Hz, 3H), 0.78 (br d, J=6.6 Hz, 3H). m/z (ESI, +ve ion): 714.4 (M+H)+.
Method 123
4-((3S,5R)-4-Acryloyl-3,5-dimethylpiperazin-1-yl)-1-(6-amino-2-isopropyl-4-methylpyridin-3-yl)-6-chloro-7-(2-fluoro-6-hydroxyphenyl)pyrido[2,3-d]pyrimidin-2(1H)-one 2,2,2-trifluoroacetate
To a stirred solution of 2,6-dichloro-5-fluoronicotinamide (0.34 g, 1.62 mmol, Intermediate P) in tetrahydrofuran (5.4 ml) was added oxalyl chloride (2M in DCM) (0.97 ml, 1.94 mmol) dropwise. The reaction mixture was heated to 70° C. for 1 h, cooled to rt, concentrated in vacuo, then redissolved in 5 mL acetonitrile. To this was added a stirred solution of 6-isopropyl-N2,N2-bis(4-methoxybenzyl)-4-methylpyridine-2,5-diamine (0.66 g, 1.62 mmol, Intermediate I-33) in 3 mL acetonitrile at 0° C. for 20 min at rt. The mixture was partitioned between EtOAc and 4:1 brine:water, backextracted with EtOAc (1×), dried over MgSO4, filtered, and concentrated to provide N-((6-(bis(4-methoxybenzyl)amino)-2-isopropyl-4-methylpyridin-3-yl)carbamoyl)-2,6-dichloro-5-fluoronicotinamide as a tan solid which was used without purification. m/z (ESI, +ve ion): 640.1 (M+H)+.
Step 2: 1-(6-(bis(4-Methoxybenzyl)amino)-2-isopropyl-4-methylpyridin-3-yl)-7-chloro-6-fluoropyrido[2,3-d]pyrimidine-2,4(1H,3H)-dioneTo a stirred solution of N-((6-(bis(4-methoxybenzyl)amino)-2-isopropyl-4-methylpyridin-3-yl)carbamoyl)-2,6-dichloro-5-fluoronicotinamide (1.04 g, 1.62 mmol) in THF at 0° C. was added potassium bis(trimethylsilyl)amide (1M in THF) (4.06 ml, 4.06 mmol). The solution was warmed slowly to rt and stirred for 20 min, then the reaction was quenched with ammonium chloride (aq), and partitioned between EtOAc and brine. The aqueous was backextracted with EtOAc (2×) and the combined organics were dried over MgSO4, filtered, and concentrated. The crude was purified using silica gel chromatography (eluent: 0-40% 3:1 [EtOAc/EtOH] in heptane to provide 1-(6-(bis(4-methoxybenzyl)amino)-2-isopropyl-4-methylpyridin-3-yl)-7-chloro-6-fluoropyrido[2,3-d]pyrimidine-2,4(1H,3H)-dione (0.61 g, 1.01 mmol, 62% yield) as an off white solid. m/z (ESI, +ve ion): 604.6 (M+H)+.
Step 3: tert-Butyl (2S,6R)-4-(1-(6-(bis(4-Methoxybenzyl)amino)-2-isopropyl-4-methylpyridin-3-yl)-7-chloro-6-fluoro-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,6-dimethylpiperazine-1-carboxylatePhosphorous oxychloride (0.11 ml, 1.22 mmol) was added dropwise to a solution of 1-(6-(bis(4-methoxybenzyl)amino)-2-isopropyl-4-methylpyridin-3-yl)-7-chloro-6-fluoropyrido[2,3-d]pyrimidine-2,4(1H,3H)-dione (0.61 g, 1.01 mmol) and 1,1′-dimethyltriethylamine (0.23 ml, 1.32 mmol) in acetonitrile (1 ml). The mixture was heated to 80° C. for 1 h. The reaction mixture was cooled to 0° C. and N-ethyl-N-isopropylpropan-2-amine (0.53 ml, 3.0 mmol) was added followed by (2R,6S)-tert-butyl 2,6-dimethylpiperazine-1-carboxylate (0.228 ml, 1.064 mmol). This mixture was warmed to RT and stirred for 1 h then was partitioned between EtOAc/NaHCO3 (aq) and the resulting biphasic mixture was separated. The aqueous layer was back-extracted with EtOAc (2×) and the organic extracts were dried over MgSO4, filtered, and concentrated in vacuo. The crude material was purified via silica gel chromatography (eluent: 0-60% 3:1 [EtOAc:EtOH] in heptane to provide tert-butyl (2S,6R)-4-(1-(6-(bis(4-methoxybenzyl)amino)-2-isopropyl-4-methylpyridin-3-yl)-7-chloro-6-fluoro-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,6-dimethylpiperazine-1-carboxylate (0.66 g, 0.83 mmol, 82% yield) as a white solid, containing residual impurities but which will be used as-is without further purification. m/z (ESI, +ve ion): 800.4 (M+H)+.
Step 4: 4-((3S,5R)-4-Acryloyl-3,5-dimethylpiperazin-1-yl)-1-(6-(bis(4-methoxybenzyl)amino)-2-isopropyl-4-methylpyridin-3-yl)-7-chloro-6-fluoropyrido[2,3-d]pyrimidin-2(1H)-oneTo a vial loaded with tert-butyl (2S,6R)-4-(1-(6-(bis(4-methoxybenzyl)amino)-2-isopropyl-4-methylpyridin-3-yl)-7-chloro-6-fluoro-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,6-dimethylpiperazine-1-carboxylate (0.66 g, 0.83 mmol), was added dichloromethane (4.1 ml), and trifluoroacetic acid (1.2 ml, 16.5 mmol). After stirring at rt 1 h the reaction mixture was concentrated in vacuo, and the residue was re-dissolved in dichloromethane (4.1 ml) and triethylamine (0.58 ml, 4.1 mmol) followed by dropwise addition of acryloyl chloride (1.12 ml, 1.2 mmol). The reaction was stirred at it for 30 min, was partitioned between EtOAc/NaHCO3, washed with NaHCO3 (2×), brine (1×), dried over MgSO4 then purified using silica gel chromatography (eluent: 0-60% 3:1 [EtOAc:EtOH] in heptane to provide 4-((3S,5R)-4-acryloyl-3,5-dimethylpiperazin-1-yl)-1-(6-(bis(4-methoxybenzyl)amino)-2-isopropyl-4-methylpyridin-3-yl)-7-chloro-6-fluoropyrido[2,3-d]pyrimidin-2(1H)-one (0.30 g, 0.39 mmol, 47% yield) as a white solid m/z (ESI, +ve ion): 754.0 (M+H)+.
Step 5: 4-((3S,5R)-4-Acryloyl-3,5-dimethylpiperazin-1-yl)-1-(6-amino-2-isopropyl-4-methylpyridin-3-yl)-6-fluoro-7-(2-fluoro-6-hydroxyphenyl)pyrido[2,3-d]pyrimidin-2(1H)-oneA vial was charged with 4-((3S,5R)-4-acryloyl-3,5-dimethylpiperazin-1-yl)-1-(6-(bis(4-methoxybenzyl)amino)-2-isopropyl-4-methylpyridin-3-yl)-7-chloro-6-fluoropyrido[2,3-d]pyrimidin-2(H)-one (0.1 g, 0.13 mmol), potassium trifluoro(2-fluoro-6-hydroxyphenyl)borate (0.04 g, 0.16 mmol, Intermediate Q), dichloro[1,1′-bis(diphenylphosphino)ferrocene]palladium (ii) dichloromethane adduct (9.7 mg, 0.013 mmol), and potassium acetate (0.065 g, 0.66 mmol). The flask was evacuated and backfilled with N2 (3×) followed by addition of 1,4-dioxane (1 ml) and water (0.2 ml). The mixture was stirred at 90° C. for 18 h. The reaction mixture was cooled to it, then filtered through a short plug of SiO2 (eluent: 3:1 EtOAc:EtOH). The filtrate was concentrated, redissolved in trifluoroacetic acid (290 μl, 4 mmol) and heated to 75° C. for 10 min, the solvent was concentrated in vacuo, the remaining residue was taken up with EtOAc, washed with NaHCO3, dried over MgSO4, adsorbed directly onto silica gel and purified via chromatography (eluent: 60% 3:1 [EtOAc/EtOH] in heptane followed by SFC purification to provide 4-((3S,5R)-4-acryloyl-3,5-dimethylpiperazin-1-yl)-1-(6-amino-2-isopropyl-4-methylpyridin-3-yl)-6-fluoro-7-(2-fluoro-6-hydroxyphenyl)pyrido[2,3-d]pyrimidin-2(1H)-. 1H NMR (CDCl3, 400 MHz): δ=9.79 (br s, 1H), 8.05 (d, J=9.7 Hz, 1H), 7.25-7.32 (m, 1H), 6.57-6.76 (m, 3H), 6.34-6.43 (m, 2H), 5.78 (dd, J=10.5, 1.8 Hz, 1H), 4.68 (br s, 2H), 4.50 (s, 2H), 4.29 (br d, J=13.5 Hz, 2H), 3.60 (br dd, =13.5, 4.1 Hz, 2H), 2.56 (dt, J=13.3, 6.7 Hz, 1H), 1.90 (s, 3H), 1.46-1.61 (m, 6H), 1.14 (d, J:=6.6 Hz, 3H), 0.97 (d, J=6.8 Hz, 3H). 19F NMR (CDCl3, 376 MHz): δ=−107.30 (d, J=82.4 Hz, 1F), −121.70 (d, J=83.2 Hz, 1F). m/z (ESI, +ve ion): 590.2 (M+H)+.
Method 124
Phosphorous oxychloride (0.016 mL, 0.168 mmol) was added dropwise to a solution of 6,7-dichloro-1-(2,4-diisopropylpyridin-3-yl)pyrido[2,3-d]pyrimidine-2,4(1H,3H)-dione (0.055 g, 0.140 mmol, Intermediate 195A) and 1,1′-dimethyltriethylamine (0.032 mL, 0.182 mmol) in CH3CN (20 mL) under N2. This mixture was then heated to 80° C. for 30 min. LCMS showed chlorination completed. The reaction mixture was cooled to 0° C. and 3 equiv DIPEA were added followed by (2R,5S)-tert-butyl 2,5-dimethylpiperazine-1-carboxylate (0.033 mL, 0.154 mmol, AstaTech). This mixture was stirred with warming to rt over 30 min at which time LCMS showed conversion to desired product. The mixture was poured into cold satd. NaHCO3 solution and stirred vigorously for 10 min. The mixture was extracted with EtOAc, the combined organics were dried over Na2SO4, filtered, concentrated and purified by chromatography on silica gel using 0-70% EtOAc in heptane to afford a light yellow solid as tert-butyl (2R,5S)-4-(6,7-dichloro-1-(2,4-diisopropylpyridin-3-yl)-2-oxo-1.2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.051 g, 0.087 mmol, 61.9% yield). m/z (ESI, +ve ion): 588.6 (M+H)+.
Step 2. tert-Butyl (2R,5S)-4-(6-chloro-1-(2,4-diisopropylpyridin-3-yl)-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylateA mixture of tert-butyl (2R,5S)-4-(6,7-dichloro-1-(2,4-diisopropylpyridin-3-yl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.051 g, 0.087 mmol), 2-fluorophenylboronic acid (0.015 ml, 0.104 mmol, CombiBlocks), sodium carbonate (0.028 g, 0.260 mmol) and tetrakis (10.00 mg, 8.65 μmol) in 1,4-dioxane/water (6/1.5 mL) was heated at 90 C for 1 h. The reaction went to completion, quenched with sat. NaHCO3 and extracted with EtOAc. The combined organics were purified by chromatography on silica gel using 0-50% 3:1 (EtOAc/EtOH) in heptane to afford tert-butyl (2R,5S)-4-(6-chloro-1-(2,4-diisopropylpyridin-3-yl)-7-(2-fluorophenyl)-2-oxo-, 2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate as a light solid. Theoretical yield considered. m/z (ESI, +ve ion): 648.6 (M+H)+.
Step 3. 4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-1-(2,4-diisopropylpyridin-3-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-oneTo a solution of tert-butyl (2R,5S)-4-(6-chloro-1-(2,4-diisopropylpyridin-3-yl)-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.056 g, 0.086 mmol) in DCM (5 mL) was added TFA (2.0 mL, 26.0 mmol) and the resulting mixture was stirred at rt for 30 min. The reaction went to completion and concentrated to afford 6-chloro-1-(2,4-diisopropylpyridin-3-yl)-4-((2S,5R)-2,5-dimethylpiperazin-1-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(H)-one. m/z (ESI, +ve ion): 548.6 (M+H)+.
6-chloro-1-(2,4-diisopropylpyridin-3-yl)-4-((2S,5R)-2,5-dimethylpiperazin-1-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-one was dissolved in DCM (5 mL) then acryloyl chloride (7.01 μl, 0.086 mmol) was added at rt. The reaction was stirred at rt for 15 min, washed with sat. NaHCO3 and extracted with DCM. The combined organics were purified by HPLC to afford 4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-1-(2,4-diisopropylpyridin-3-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(H)-one (0.023 g, 0.038 mmol, 44.2% yield) as a white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.42-8.51 (m, 2H), 7.45-7.58 (m, 1H), 7.21-7.38 (m, 3H), 7.18 (td, J=7.4, 1.6 Hz, 1H), 6.84 (td, J=15.8, 10.5 Hz, 1H), 6.20 (dd, J=16.7, 2.2 Hz, 1H), 5.72-5.82 (m, 1H), 4.73-4.97 (m, 2H), 4.47 (br dd, J=6.1, 3.4 Hz, 1H), 4.12-4.23 (m, 1H), 3.83-3.96 (m, 2H), 3.51 (br dd, J=13.6, 3.6 Hz. 1H), 1.31-1.40 (m, 3H), 1.26 (br d, J=6.6 Hz, 2H), 1.18 (d, J=6.6 Hz, 2H), 1.07 (dd, J=6.6, 4.4 Hz, 6H), 0.93 (t, J=7.7 Hz, 6H). m/z (ESI, +ve ion): 602.6 (M+H)+.
Method 125
Phosphorous oxychloride (0.206 mL, 2.206 mmol) was added dropwise to a solution of 6,7-dichloro-1-(2,4-diisopropylpyridin-3-yl)pyrido[2,3-d]pyrimidine-2,4(1H,3H)-dione (0.723 g, 1.838 mmol, Intermediate 195B) and 1,1′-dimethyltriethylamine (0.417 mL, 2.390 mmol) in CH3CN (5 mL) under N2. This mixture was then heated to 80° C. for 30 min. LCMS showed chlorination completed. The reaction mixture was cooled to 0° C. and 3 equiv DIPEA were added followed by (2R,5S)-tert-butyl 2,5-dimethylpiperazine-1-carboxylate (0.433 mL, 2.022 mmol, AstaTech). This mixture was stirred with warming to rt over 30 min at which time LCMS showed conversion to desired product. The mixture was poured into cold satd. NaHCO3 solution and stirred vigorously for 10 min. The mixture was extracted with EtOAc, the combined organics were dried over Na2SO4, filtered, concentrated and purified by chromatography on silica gel using 0-70% EtOAc in heptane to afford a light yellow solid as tert-butyl (2R,5S)-4-(6,7-dichloro-1-(2,4-diisopropylpyridin-3-yl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.83 g, 1.408 mmol, 77% yield). m/z (ESI, +ve ion): 588.6 (M+H)+.
Step 2. tert-Butyl (2R,5S)-4-(6-chloro-1-(2,4-diisopropylpyridin-3-yl)-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylateA mixture of tert-butyl (2R,5S)-4-(6,7-dichloro-1-(2,4-diisopropylpyridin-3-yl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.280 g, 0.475 mmol), 2-fluorophenylboronic acid (0.080 ml, 0.570 mmol, CombiBlocks), sodium carbonate (0.151 g, 1.425 mmol) and tetrakis (0.055 g, 0.047 mmol) in 1,4-dioxane/water (6/1.5 mL) was heated at 90 C for 1 h. The reaction went to completion, quenched with sat. NaHCO3 and extracted with EtOAc. The combined organics were purified by chromatography on silica gel using 0-50% 3:1 (EtOAc/EtOH) in heptane to afford tert-butyl (2R,5S)-4-(6-chloro-1-(2,4-diisopropylpyridin-3-yl)-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.200 g, 0.308 mmol, 64.9% yield). m/z (ESI, +ve ion): 648.6 (M+H)+.
Step 3. 4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-1-(2,4-diisopropylpyridin-3-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-oneTo a solution of tert-butyl (2R,5S)-4-(6-chloro-1-(2,4-diisopropylpyridin-3-yl)-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.200 g, 0.308 mmol) in DCM (3 mL) was added TFA (2.0 mL, 26.0 mmol) and the resulting mixture was stirred at rt for 30 min. The reaction went to completion, concentrated to afford 6-chloro-1-(2,4-diisopropylpyridin-3-yl)-4-((2S,5R)-2,5-dimethylpiperazin-1-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-one to be used as is. m/z (ESI, +ve ion): 548.6 (M+H)+.
6-chloro-1-(2,4-diisopropylpyridin-3-yl)-4-((2S,5R)-2,5-dimethylpiperazin-1-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-one was dissolved in DCM (6 mL) then acryloyl chloride (0.025 mL, 0.308 mmol) was added at it. The reaction was stirred at it for 15 min, washed with sat. NaHCO3 and extracted with DCM. The combined organics were purified by HPLC to afford 4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-1-(2,4-diisopropylpyridin-3-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-one (0.130 g, 0.216 mmol, 70.0% yield) as a white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.20-8.61 (m, 2H), 7.44-7.59 (m, 1H), 7.23-7.37 (m, 3H), 7.10-7.22 (m, 1H), 6.84 (td, J=16.1, 10.4 Hz, 1H), 6.20 (dd, J=16.7, 2.2 Hz, 1H), 5.76 (ddd, J=10.3, 4.5, 2.3 Hz, 1H), 4.72-4.97 (m, 2H), 4.43-4.55 (m, 1H), 4.10-4.24 (m, 2H), 3.83-3.97 (m, 2H), 1.31-1.40 (m, 3H), 1.26 (br d, J=6.6 Hz, 2H), 1.18 (br d, J=6.8 Hz, 2H), 1.08 (br d, J=5.6 Hz, 6H), 0.94 (t, J=6.5 Hz, 6H). m/z (EST, +ve ion): 602.6 (M+H)+.
Method 129
A mixture of 4-((2S,5R,M)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-7-(2-amino-6-fluorophenyl)-6-chloro-1-(2-isopropyl-4-methylpyridin-3-yl)pyrido[2,3-d]pyrimidin-2(1H)-one (0.11 g, 0.18 mmol, Intermediate 233) in dichloromethane (0.2 mL) was added acetic acid anhydride (0.1 mL, 0.98 mmol) and stirred at room temperature for 1 h. The resulting mixture was diluted with EtOAc (10 mL) and washed with saturated sodiom bicarbonate solution (10 mL). The aqueous layer was extracted with EtOAc (10 mL×2). The combined organic extracts were washed with saturated NaCl solution (20 mL) and dried over MgSO4. The solution was filtered and concentrated in vacuo to give (M)-N-[2-[6-Chloro-4-[(2S,5R)-2,5-dimethyl-4-prop-2-enoyl-piperazin-1-yl]-1-(2-isopropyl-4-methyl-3-pyridyl)-2-oxo-pyrido[2,3-d]pyrimidin-7-yl]-3-fluoro-phenyl]acetamide (0.10 mg, 0.17 mmol, 91% yield) as a light-yellow solid. 1H NMR (400 MHz, DMSO-d6) δ 8.73-9.11 (m, 1H), 8.43-8.51 (m, 1H), 8.37 (d, J=5.0 Hz, 1H), 7.36-7.81 (m, 2H), 7.14-7.22 (m, 1H), 6.94-7.10 (m, 1H), 6.73-6.92 (m, 1H), 6.14-6.26 (m, 1H), 5.76 (dt, J=10.2, 3.0 Hz, 1H), 4.44-4.96 (m, 2H), 3.76-4.25 (m, 4H), 2.56-2.63 (m, 1H), 2.22 (s, 3H), 1.89-2.04 (m, 3H), 1.34 (br t, J=7.2 Hz, 3H), 1.15-1.27 (m, 3H), 1.01-1.13 (m, 3H), 0.79-0.99 (m, 3H). 19F NMR (376 MHz, DMSO-d6) δ −116.97-112.40 (m, 1F). m/z (ESI, +ve ion): 632.2 (M+H)+.
Method 132
A mixture of (M)-6-chloro-4-[(2S,5R)-2,5-dimethyl-4-prop-2-enoyl-piperazin-1-yl]-1-(2-isopropyl-4-methyl-3-pyridyl)-7-(2-methoxyphenyl)pyrido[2,3-d]pyrimidin-2-one (0.31 g, 0.49 mmol) in 1,2-dichloroethane (10 mL) was treated with boron tribromide solution (1.0 M in hexanes, 2.5 mL, 2.5 mmol) 0° C. and stirred for 1 h. The reaction mixture was added saturated sodium bicarbonate solution (10 mL) and extracted with EtOAc (10 mL×2). The combined organic extracts were dried over Na2SO4. The solution was filtered and concentrated in vacuo to give the crude material. The crude material was purified by silica gel chromatography (eluent: 0-100% of EtOAc-MeOH (4:1)/heptane) to provide (M)-6-Chloro-4-[(2S,5R)-2,5-dimethyl-4-prop-2-enoyl-piperazin-1-yl]-7-(3-hydroxy-1-naphthyl)-1-(2-isopropyl-4-methyl-3-pyridyl)pyrido[2,3-d]pyrimidin-2-one (0.26 g, 0.42 mmol, 85% yield) as an yellow solid. 1H NMR (400 MHz, DMSO-d6) δ 9.96 (s, 1H), 8.49 (d, J=3.1 Hz, 1H), 8.30 (d, J=4.8 Hz, 1H), 7.73 (d, J=8.3 Hz, 1H), 7.39 (ddd, J=8.1, 6.2, 1.9 Hz, 1H), 7.15-7.25 (m, 3H), 7.12 (d, J=4.8 Hz, 1H), 6.78-6.95 (m, 2H), 6.20 (dd, J=16.6, 2.3 Hz, 1H), 5.71-5.82 (m, 1H), 4.89 (br s, 1H), 4.46-4.84 (m, 1H), 3.47-4.30 (m, 4H), 2.70-2.80 (m, 1H), 1.94 (s, 3H), 1.32-1.41 (m, 3H), 1.18-1.32 (m, 3H), 1.06 (d, J=6.6 Hz, 3H), 0.92 (d, J=6.6 Hz, 3H). m/z (ESI, +ve ion): 632.2 (M+H)+.
Method 141
To a solution of 4-(((tert-butyldiphenylsilyl)oxy)methyl)-2-isopropylpyridin-3-amine (1.0 g, 2.47 mmol, Intermediate 207) and N,N-diisopropylethylamine (0.950 ml, 5.44 mmol, Aldrich, St. Louis, MO) in tetrahydrofuran (25 mL) was added phosgene solution, 15% in toluene (1.30 ml, 2.74 mmol, Aldrich, St. Louis, MO) dropwise via syringe. After stirring for 10 min at rt, the resulting mixture was cooled to 0° C. and (2R,5S)-tert-butyl 4-((2,5-dichloro-6-(2-isopropylphenyl)pyridin-3-yl)(imino)methyl)-2,5-dimethylpiperazine-1-carboxylate (1.50 g, 2.97 mmol, Intermediate 170) was added as a solid. After the addition, the ice bath was removed and the reaction was warmed to rt and stirred for 1 h. To this mixture was added sodium tert-butoxide solution, 2.0 M in tetrahydrofuran (3.71 ml, 7.41 mmol, Aldrich, St. Louis, MO) dropwise via syringe and the mixture was stirred for 30 min. The reaction was quenched with water (3 mL) and partitioned between EtOAc (40 mL) and water (20 mL). The aqueous layer was extracted with EtOAc (30 mL). The combined organic layers were dried over MgSO4, filtered, and concentrated. The crude product was purified by silica gel chromatography (eluent: 5-40% acetone/heptane) to provide (2R,5S)-tert-butyl 4-(1-(2-(((tert-butyldiphenylsilyl)oxy)methyl)-6-isopropylphenyl)-6-chloro-7-(2-isopropylphenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate as a brown foam (1.6 g). 1H NMR (400 MHz, CHLOROFORM-d) δ 8.63-8.68 (m, 1H), 8.01 (d, J=3.32 Hz, 1H), 7.61 (s, 1H), 7.49-7.59 (m, 4H), 7.29-7.43 (m, 7H), 7.24 (d, J=6.84 Hz, 2H), 7.09-7.17 (m, 1H), 4.78-4.93 (m, 1H), 4.60-4.73 (m, 1H), 4.44-4.59 (m, 1H), 4.22-4.37 (m, 1H), 4.13 (d, J=7.26 Hz, 1H), 3.73-3.92 (m, 2H), 3.34-3.60 (m, 1H), 2.60-2.75 (m, 1H), 2.39-2.55 (m, 1H), 1.54 (d, J=14.31 Hz, 15H), 1.38 (s, 3H), 1.18-1.27 (m, 5H), 0.99-1.09 (m, 13H). m/z (ESI) M+H: 899.4.
Step 2. (2R,5S)-tert-Butyl 4-(6-chloro-1-(2-(hydroxymethyl)-6-isopropylphenyl)-7-(2-isopropylphenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylateTo a solution of (2R,5S)-tert-butyl 4-(1-(2-(((tert-butyldiphenylsilyl)oxy)methyl)-6-isopropylphenyl)-6-chloro-7-(2-isopropylphenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (1.3 g, 1.44 mmol) in tetrahydrofuran (15 mL) was added tetrabutylammonium fluoride, 1.0 M in THF (1.60 mL, 1.60 mmol, Aldrich, St. Louis, MO). The resulting mixture was stirred at rt under N2 for 2 h. The reaction was concentrated. The crude product was purified by silica gel chromatography (eluent: 0-40% acetone/heptane) to provide (2R,5S)-tert-butyl 4-(6-chloro-1-(2-(hydroxymethyl)-6-isopropylphenyl)-7-(2-isopropylphenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate as light yellow foam (0.740 g). 1H NMR (400 MHz, CHLOROFORM-d) δ 8.61 (d, J=4.98 Hz, 1H), 8.16 (s, 1H), 8.07-8.13 (m, 1H), 7.38 (s, 1H), 7.30-7.34 (m, 2H), 7.19 (s, 1H), 6.95-7.03 (m, 1H), 4.7-4.97 (m, 1H), 4.52-4.73 (m, 1H), 4.34-4.42 (m, 1H), 4.21-4.33 (m, 1H), 3.94-4.10 (m, 1H), 3.73-3.88 (m, 1H), 3.49-3.69 (m, 1H), 2.68-2.80 (m, 1H), 2.37-2.58 (m, 2H), 1.56 (s, 6H), 1.53 (s, 9H), 1.26-1.30 (m, 3H), 1.18-1.24 (m, 3H), 0.97-1.09 (m, 6H). m/z (ESI) M+H: 661.2.
Step 3. (2R,5S)-tert-Butyl 4-(6-chloro-1-(2-formyl-6-isopropylphenyl)-7-(2-isopropylphenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylateTo a solution of (2R,5S)-tert-butyl 4-(6-chloro-1-(2-(hydroxymethyl)-6-isopropylphenyl)-7-(2-isopropylphenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.845 g, 1.28 mmol) in dichloromethane (12 mL) was added Dess-Martin periodinane (0.813 g, 1.92 mmol, Aldrich, St. Louis, MO). The resulting mixture was stirred at rt under N2 for 2 h. The reaction was quenched with sat. Na2S2O3 (10 mL) and stirred for 30 min. The aqueous layer was extracted with DCM (2×20 mL). The combined organic layers were dried over MgSO4, filtered, and concentrated. The crude product was purified by silica gel chromatography (eluent: 5-40% acetone/heptane) to provide (2R,5S)-tert-butyl 4-(6-chloro-1-(2-formyl-6-isopropylphenyl)-7-(2-isopropylphenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate as a white solid (0.150 g). 1H NMR (400 MHz, CHLOROFORM-d) δ 9.86 (d, J=3.11 Hz, 1H), 8.82-8.89 (m, 1H), 8.16 (s, 1H), 7.55 (s, 1H), 7.35-7.40 (m, 1H), 7.31 (s, 1H), 7.17 (s, 1H), 6.89-7.03 (m, 1H), 4.88-5.12 (m, 1H), 4.54-4.70 (m, 1H), 4.33-4.53 (m, 1H), 4.02-4.24 (m, 1H), 3.84-3.96 (m, 1H), 3.46-3.70 (m, 1H), 2.90-3.06 (m, 1H), 2.35-2.53 (m, 1H), 1.55 (s, 6H), 1.53 (s, 9H), 1.25-1.30 (m, 6), 1.04-1.10 (m, 3H), 0.94-1.03 (m, 3H). m/z (ESI) M+H: 659.2.
Step 4. (2R,5S)-tert-Butyl 4-(6-chloro-1-(4-((diethylamino)methyl)-2-isopropylpyridin-3-yl)-7-(2-isopropylphenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylateTo a solution of (2R,5S)-tert-butyl 4-(6-chloro-1-(2-formyl-6-isopropylphenyl)-7-(2-isopropylphenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.150 g, 0.228 mmol) in dichloromethane (3 mL) was added diethylamine (0.100 mL, 0.943 mmol, Aldrich, St. Louis, MO) and 2 drops of AcOH. After stirred for 10 min, sodium triacetoxyborohydride (0.145 g, 0.683 mmol, Aldrich, St. Louis, MO) was added and the resulting mixture was continued to stir at rt under N2 for 1 h. Reaction was quenched with sat. NaHCO3 (2 mL) and partitioned between DCM (30 mL) and sat. NaHCO3 (10 mL). The aqueous layer was extracted with DCM (30 mL). The combined organic layers were dried over MgSO4, filtered, and concentrated. The crude product was purified by silica gel chromatography (eluent: 3-5% 2M NH3 MeOH/DCM) to provide (2R,5S)-tert-butyl 4-(6-chloro-1-(4-((diethylamino)methyl)-2-isopropylpyridin-3-yl)-7-(2-isopropylphenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate as white foam (0.120 g). 1H NMR (400 MHz, CHLOROFORM-d) δ 8.49-8.56 (m, 1H), 8.07-8.16 (m, 1H), 7.39-7.45 (m, 1H), 7.37 (s, 1H), 7.33 (s, 1H), 7.17 (s, 1H), 6.95-7.03 (m, 1H), 4.87-5.08 (m, 1H), 4.37-4.66 (m, 1H), 4.01-4.22 (m, 1H), 3.85-3.98 (m, 1H), 3.75-3.85 (m, 1H), 3.49-3.68 (m, 1H), 3.34-3.46 (m, 1H), 2.99-3.13 (m, 1H), 2.68-2.82 (m, 1H), 2.50-2.63 (m, 1H), 2.29-2.42 (m, 2H), 2.18-2.29 (m, 2H), 1.53 (s, 9H), 1.42-1.49 (m, 3H), 1.28 (br s, 6H), 1.23 (d, J=6.84 Hz, 3H), 1.04 (s, 3H), 0.89 (s, 3H), 0.83 (br d, J=4.35 Hz, 6H). m/z (ESI) M+H: 716.4.
Step 5. 4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-1-(4-((diethylamino)methyl)-2-isopropylpyridin-3-yl)-7-(2-isopropylphenyl)pyrido[2,3-d]pyrimidin-2(1H)-oneTo a solution of (2R,5S)-tert-butyl 4-(6-chloro-1-(4-((diethylamino)methyl)-2-isopropylpyridin-3-yl)-7-(2-isopropylphenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.120 g, 0.168 mmol) in dichloromethane (3 mL) was added trifluoroacetic acid (0.262 mL, 3.52 mmol, Aldrich, St. Louis, MO). The resulting mixture was stirred at rt for 2 h. The mixture was concentrated, redissolved in DCM (3 mL) and treated with N,N-diisopropylethylamine (0.120 mL, 0.687 mmol, Aldrich, St. Louis, MO). The mixture was cooled to 0° C. and treated with acryloyl chloride (0.170 mL, 0.187 mmol, 1.1 M. Aldrich, St. Louis, MO). After the addition, the ice bath was removed and the reaction was warmed up to rt and continued to stir for 30 min. The reaction was quenched with sat. NaHCO3 (3 mL) and extracted with DCM (2×10 mL). The combined organic layers were dried over MgSO4, filtered, and concentrated. The crude product was purified by silica gel chromatography (eluent: 3-5% 2M NH3 MeOH/DCM) to provide 4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-1-(4-((diethylamino)methyl)-2-isopropylpyridin-3-yl)-7-(2-isopropylphenyl)pyrido[2,3-d]pyrimidin-2(1H)-one as a white solid (0.100 g, Example 141-1). 1H NMR (400 MHz, CHLOROFORM-d) δ 8.49-8.56 (m, 1H), 8.09-8.17 (m, 1H), 7.35-7.47 (m, 2H), 7.30-7.35 (m, 1H), 7.14-7.22 (m, 1H), 6.96-7.04 (m, 1H), 6.52-6.72 (m, 1H), 6.34-6.47 (m, 1H), 5.75-5.85 (m, 11H), 5.03-5.19 (m, 1H), 4.33-4.55 (m, 1H), 3.88-4.12 (m, 2H), 3.67-3.82 (m, 1H), 3.35-3.47 (m, 1H), 3.00-3.12 (m, 1H), 2.67-2.82 (m, 1H), 2.52-2.64 (m, 1H), 2.30-2.41 (m, 2H), 2.21-2.29 (m, 2H), 1.46 (br d, J=6.43 Hz, 4H), 1.28 (br s, 6H), 1.23 (br d, J=6.63 Hz, 3H), 1.03 (br d, J=6.63 Hz, 6H), 0.83 (br d, J=3.73 Hz, 6H). m/z (ESI) M+H: 670.2.
Method 144
A mixture of (M)-6,7-dichloro-1-(2-isopropyl-4-methylpyridin-3-yl)pyrido[2,3-d]pyrimidine-2,4(1H,3H)-dione (Intermediate 73B, 0.43 g, 1.16 mmol) and DIPEA (1.0 mL, 5.82 mmol) in acetonitrile (5.0 mL) was treated with phosphorous oxychloride (0.3 mL, 3.49 mmol) at room temperature. The mixture was stirred at 80° C. for 30 min. The reaction mixture was evaporated to dryness to give 4,6,7-trichloro-1-(2-isopropyl-4-methylpyridin-3-yl)pyrido[2,3-d]pyrimidin-2(1H)-one as a orange oil. LC/MS purity: >95% (215 nm); >95% (254 nm). m/z (ESI, +ve ion): 383.1 (M+H)+. The resulting brown solid was used in next step without purification.
To a mixture of the above crude 4,6,7-trichloro-1-(2-isopropyl-4-methylpyridin-3-yl)pyrido[2,3-d]pyrimidin-2(1H)-one in acetonitrile (5.0 mL) was added a solution of 2-(piperazin-2-yl)acetonitrile dihydrochloride (0.35 g, 1.75 mmol) and DIPEA (1.0 mL, 5.82 mmol) in acetonitrile (2.0 mL). The resulting mixture was stirred at room temperature for 10 min and then treated with acryloyl chloride (1.1 M solution in DCM 1.6 mL, 1.75 mmol). The resulting mixture was stirred at room temperature for 10 min and evaporated to dryness. The resulting crude product was purified by silica gel chromatography (eluent: 0-100% of EtOAc-MeOH (9:1)/heptane) to provide (M)-2-[4-[6,7-dichloro-1-(2-isopropyl-4-methyl-3-pyridyl)-2-oxo-pyrido[2,3-d]pyrimidin-4-yl]-1-prop-2-enoyl-piperazin-2-yl]acetonitrile (0.36 g, 0.68 mmol, 58.5% yield) as an yellow solid. 1H NMR (400 MHz, DMSO-d4) δ 8.66 (s, 1H), 8.52 (d, J=5.0 Hz, 1H), 7.34 (br s, 1H), 6.73-7.00 (m, 1H), 6.22 (dd, J=16.6, 1.9 Hz, 1H), 5.73-5.89 (m, 1H), 4.81-5.02 (m, 1H), 4.26-4.41 (m, 2H), 3.79-4.09 (m, 3H), 3.57 (d, J=11.0 Hz, 2H), 2.97-3.07 (m, 1H), 2.59-2.82 (m, 1H), 1.91-2.04 (m, 3H), 1.08 (dd, J=6.6, 3.5 Hz, 3H), 1.02 (dd, J=6.6, 2.7 Hz, 3H). m/z (ESI, +ve ion): 526.1 (M+H)+.
Step 2: (M)-2-[4-[7-(2-Amino-6-fluoro-phenyl)-6-chloro-1-(2-isopropyl-4-methyl-3-pyridyl)-2-oxo-pyrido[2,3-d]pyrimidin-4-yl]-1-prop-2-enoyl-piperazin-2-yl]acetonitrileA mixture of (M)-2-[4-[6,7-dichloro-1-(2-isopropyl-4-methyl-3-pyridyl)-2-oxo-pyrido[2,3-d]pyrimidin-4-yl]-1-prop-2-enoyl-piperazin-2-yl]acetonitrile (0.11 g, 0.21 mmol), tetrakis(triphenylphosphine)palladium (0.02 g, 0.02 mmol), 2-fluoro-6-aminophenylboronic acid pinacol ester (0.07 g, 0.31 mmol, CombiPhos Catalysts, Inc.) and sodium carbonate (0.11 g, 1.04 mmol) in 1,4-dioxane (1.0 mL)/water (0.5 mL) was stirred at 900 for 30 min. The resulting mixture was evaporated to dryness. The resulting crude product was purified by silica gel chromatography (eluent: 0-100% of EtOAc/heptane) to provide (M)-2-[4-[7-(2-amino-6-fluoro-phenyl)-6-chloro-1-(2-isopropyl-4-methyl-3-pyridyl)-2-oxo-pyrido[2,3-d]pyrimidin-4-yl]-1-prop-2-enoyl-piperazin-2-yl]acetonitrile (0.06 g, 0.10 mmol, 48.1% yield) as an yellow solid. 1H NMR (400 MHz, DMSO-d6) δ 8.59-8.65 (m, 1H), 8.36-8.44 (m, 1H), 7.19 (d, J=5.0 Hz, 1H), 7.06 (q, J=7.9 Hz, 1H), 6.77-6.98 (m, 1H), 6.41-6.49 (m, 1H), 6.32 (br t, J=8.3 Hz, 1H), 6.23 (dd, J=16.6, 1.7 Hz, 1H), 5.81 (br d, J=11.8 Hz, 1H), 5.10-5.18 (m, 1H), 5.05 (br s, 1H), 4.83-5.01 (m, 1H), 4.02-4.48 (m, 3H), 3.45-4.00 (m, 3H), 3.13-3.21 (m, 1H), 2.98-3.13 (m, 1H), 2.63-2.93 (m, 1H), 1.81-2.02 (m, 3H), 1.03-1.12 (m, 3H), 0.86-1.01 (m, 3H). 19F NMR (376 MHz, DMSO-d6) δ −116.31-−115.08 (m, 1F). m/z (ESI, +ve ion): 601.2 (M+H)+.
Method 145
A solution of 2,5-dichloro-6-(2-fluorophenyl)nicotinamide (Intermediate 99B, 2.75 g, 9.65 mmol) in THF (20 mL) was treated with oxalyl chloride (2.0 M solution in DCM, 5.8 mL, 11.57 mmol). The mixture was stirred at 75° C. for 60 min. The mixture was cooled to room temperature and concentrated in vacuo. The above crude material was redissolved into THF (20 mL) and a mixture of neopentylamine (1.1 mL, 9.65 mmol) and huenigs base (3.4 mL, 19.29 mmol) in THF (10 mL) was added. The resulting mixture was stirred at room temperature for 3 days. The reaction mixture was then partitioned between water (50 mL) and EtOAc (50 mL). The aqueous phase was extracted with EtOAc (50 mL). The combined organic phases were dried over Na2SO4 and concentrated to give a crude material, which was purified by silica gel chromatography (eluent: 0-50% of EtOAc/heptane) to provide 2,5-dichloro-6-(2-fluorophenyl)-N-(neopentylcarbamoyl)nicotinamide (1.09 g, 2.74 mmol, 28.4% yield) as a light yellow solid. m/z (ESI, +ve ion): 398.0 (M+H)+.
Step 2: 6-Chloro-7-(2-fluorophenyl)-1-neopentylpyrido[2,3-d]pyrimidine-2,4(1H,3H)-dioneA mixture of 2,5-dichloro-6-(2-fluorophenyl)-N-(neopentylcarbamoyl)-nicotinamide (1.09 g, 2.74 mmol) in THF (10 mL) at 0° C. was treated with potassium bis(trimethylsilyl)amide (1.0 M in THF, 5.5 mL, 5.50 mmol) and stirred at 0° C. for 15 min. The reaction mixture was quenched with saturated aqueous NH4Cl (10 mL) and extracted with EtOAc (20 mL×2). The combined organic layers were washed with brine (50 mL), dried over Na2SO4, filtered, and concentrated in vacuo. The resulting crude product was sonicated in EtOAc (3 mL). The resulting solid was collected by filtration, washed with EtOAc and dried to give pure 6-chloro-7-(2-fluorophenyl)-1-neopentylpyrido[2,3-d]pyrimidine-2,4(1H,3H)-dione (0.75 g, 2.06 mmol, 75% yield) as a light yellow solid. 1H NMR (400 MHz, DMSO-d6) δ 11.88 (s, 1H), 8.44 (s, 1H), 7.56-7.66 (m, 1H), 7.45-7.53 (m, 1H), 7.35-7.44 (m, 2H), 4.07 (s, 2H), 0.90 (s, 9H). 19F NMR (376 MHz, DMSO-d6) δ −114.02 (s, 1F). m/z (ESI, +ve ion): 362.2 (M+H)+.
Step 3: 2-[4-[6-Chloro-1-(2,2-dimethylpropyl)-7-(2-fluorophenyl)-2-oxo-pyrido[2,3-d]pyrimidin-4-yl]-1-prop-2-enoyl-piperazin-2-yl]acetonitrileA mixture of 6-chloro-7-(2-fluorophenyl)-1-neopentylpyrido[2,3-d]pyrimidine-2,4(1H,3H)-dione (0.35 g, 0.97 mmol) and n,n′-diisopropylethylamine (0.8 mL, 4.84 mmol) in acetonitrile (5.0 mL) was treated with phosphorous oxychloride (0.3 mL, 2.90 mmol) at room temperature. The mixture was stirred at 80° C. for 1 h. The reaction mixture was evaporated to dryness to give 4,6-dichloro-7-(2-fluorophenyl)-1-neopentylpyrido[2,3-d]pyrimidin-2(1H)-one as a brown oil. m-z (ESI, +ve ion): 380.0 (M+H)+. The resulting brown oil was used in next step without purification.
To the mixture of 4,6-dichloro-7-(2-fluorophenyl)-1-neopentylpyrido[2,3-d]pyrimidin-2(1H)-one in acetonitrile (5.0 mL) was added a solution of 2-(piperazin-2-yl)acetonitrile dihydrochloride (0.29 g, 1.45 mmol, Enamine Ltd.) and n,n′-diisopropylethylamine (0.8 mL, 4.84 mmol) in acetonitrile (2.0 mL) and stirred at rt for 10 min. The resulting mixture was then treated with acryloyl chloride (1.1 M in DCM, 1.3 mL, 1.45 mmol) and stirred at rt for 10 min. The reaction mixture was evaporated to dryness. The resulting crude product was purified by silica gel chromatography (0-100% of EtOAc-MeOH (9:1)/heptane) to provide 2-[4-[6-chloro-1-(2,2-dimethylpropyl)-7-(2-fluorophenyl)-2-oxo-pyrido[2,3-d]pyrimidin-4-yl]-1-prop-2-enoyl-piperazin-2-yl]acetonitrile (0.23 g, 0.43 mmol, 44.7% yield) as an yellow solid. 1H NMR (400 MHz, DMSO-d6) δ 8.49 (s, 1H), 7.49-7.70 (m, 2H), 7.33-7.46 (m, 2H), 6.73-7.01 (m, 1H), 6.20 (dd, J=16.6, 2.1 Hz, 1H), 5.79 (br d, J=11.8 Hz, 1H), 4.75-5.01 (m, 1H), 4.03-4.37 (m, 5H), 3.42-4.01 (m, 3H), 2.90-3.20 (m, 2H), 0.88 (s, 9H). 19F NMR (376 MHz, DMSO-d6) δ −113.65 (s, 1F). m/z (ESI, +ve ion): 523.3 (M+H)+.
Method 146
A 100-mL round-bottomed flask was charged with 2,5,6-trichloronicotinamide (1.89 g, 8.38 mmol, WuXi) and tetrahydrofuran (32 ml). Oxalyl chloride (2.0 M solution in DCM, 5.0 mL, 10.06 mmol) was added to the reaction mixture and stirred at 75° C. for 1.5 h. The mixture was allowed to cool to rt and concentrated n vacuo.
The resulting residue was redissolved into tetrahydrofuran (32 mL) and treated with 2-(prop-2-en-1-yl)-6-(propan-2-yl)aniline (1.5 mL, 8.38 mmol, Enamine Ltd.). The mixture was stirred at rt for 10 min. The reaction mixture was partitioned between water (50 mL) and EtOAc (50 mL). The aqueous phase was extracted with EtOAc (50 mL). The aqueous phase was then saturated with solid NaCl and further extracted with EtOAc (200 mL). The combined organic phases were dried over Na2SO4 and concentrated to give N-((2-allyl-6-isopropylphenyl)carbamoyl)-2,5,6-trichloronicotinamide (3.81 g, 8.94 mmol, 100% yield) as a tan foam. m/z (ESI, +ve ion): 426.0 (M+H)+.
Step 2: 1-(2-Allyl-6-isopropylphenyl)-6,7-dichloropyrido[2,3-d]pyrimidine-2,4(1H,3H)-dioneA mixture of N-((2-allyl-6-isopropylphenyl)carbamoyl)-2,5,6-trichloronicotinamide (3.58 g, 8.38 mmol) in tetrahydrofuran (27.9 mL) at 0° C. was treated with potassium bis(trimethylsilyl)amide (1.0 M in THF, 16.8 mL, 16.76 mmol) The resulting mixture was stirred at 0° C. for 10 min. The reaction mixture was quenched with saturated aqueous NH4Cl (30 mL) and extracted with EtOAc (30 mL×2). The organic layers were combined, washed with brine (50 mL), dried over Na2SO4, filtered, and concentrated in vacuo. The resulting crude product was sonicated in MeOH (20 mL). The resulting solid was collected by filtration, washed with MeOH and dried to give pure 1-(2-allyl-6-isopropylphenyl)-6,7-dichloropyrido[2,3-d]pyrimidine-2,4(1H,3H)-dione (2.636 g, 6.75 mmol, 81% yield) as a tan solid. LC/MS purity: 99% (215 nm); 99%(254 nm). 1H NMR (400 MHz, DMSO-d6) δ 12.18 (s, 1H), 8.56 (s, 1H), 7.32-7.49 (m, 2H), 7.20 (dd, J=7.3, 1.5 Hz, 1H), 5.66 (ddt, J=16.9, 10.1, 6.8, 6.8 Hz, 1H), 4.80-4.90 (m, 2H), 3.10 (d, J=6.6 Hz, 2H), 2.64-2.74 (m, 1H), 1.08 (d, J=6.8 Hz, 3H), 0.99 (d, J=6.6 Hz, 3H). m/z (ESI, +ve ion): 390.0 (M+H)+.
Step 3: (P)-1-(2-Allyl-6-isopropylphenyl)-6,7-dichloropyrido[2,3-d]pyrimidine-2,4(1H,3H)-dione and (M)-1-(2-Allyl-6-isopropylphenyl)-6,7-dichloropyrido[2,3-d]pyrimidine-2,4(1H,3H)-dioneA mixture of atropisomers 1-(2-allyl-6-isopropylphenyl)-6,7-dichloropyrido[2,3-d]pyrimidine-2,4(1H,3H)-dione (2.15 g) was purified by SFC (WelkoSS, 5 μm, 21×250 mm two in series, total 50 cm, 15% MeOH/CO2, 80 mL/min, 90 bar) to obtain two peaks: Peak 1 (Intermediate 146A, (P)-isomer, 780 mg, >99% ee) and Peak 2 (Intermediate 146B, (M)-isomer, 850 mg, 95.3% ee).
Step 4: (P)-tert-Butyl (2R,5S)-4-(1-(2-allyl-6-isopropylphenyl)-6,7-dichloro-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylateA mixture of (P)-1-(2-allyl-6-isopropylphenyl)-6,7-dichloropyrido[2,3-d]pyrimidine-2,4(1H,3H)-dione (Peak 1) (780 mg, 2.00 mmol) and DIPEA (1.75 mL, 9.99 mmol) in acetonitrile (10 mL) was treated with phosphorous oxychloride (0.56 mL, 6.00 mmol) at room temperature. The mixture was stirred at 80° C. for 30 min. The reaction mixture was evaporated to dryness to give (P)-1-(2-allyl-6-isopropylphenyl)-4,6,7-trichloropyrido[2,3-d]pyrimidin-2(1H)-one as a brown oil. m/z (ESI, +ve ion): 408.0 (M+H)+. The resulting brown solid was used in next step without purification.
The mixture of (P)-1-(2-allyl-6-isopropylphenyl)-4,6,7-trichloropyrido[2,3-d]pyrimidin-2(1H)-one and DIPEA (1.75 mL, 9.99 mmol) in acetonitrile (10 mL) was added tert-butyl (2R,5S)-2,5-dimethylpiperazine-1-carboxylate (578 mg, 2.70 mmol, AstaTech) and stirred at rt for 15 min. The resulting mixture was diluted with water (15 mL) and extracted with EtOAc (3×15 mL). The organic extract was dried over MgSO4. The solution was filtered and concentrated in vacuo to give the crude material as a brown solid. The crude material brown solid which was purified by silica gel chromatography (0-50% of EtOAc/heptane) to provide (P)-tert-butyl (2R,5S)-4-(1-(2-allyl-6-isopropylphenyl)-6,7-dichloro-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (696 mg, 1.19 mmol, 59.4% yield) as a light yellow solid. 1H NMR (400 MHz, DMSO-d6) δ 8.38 (s, 1H), 7.29-7.46 (m, 2H), 7.18 (dd, J=7.3, 1.2 Hz, 1H), 5.66 (ddt, J=17.8, 9.2, 6.8, 6.8 Hz, 1H), 4.82-4.86 (m, 1H), 4.81 (s, 1H), 4.75 (br s, 1H), 4.16-4.42 (m, 1H), 4.08 (br d, J=13.7 Hz, 1H), 3.79 (br s, 1H), 3.67 (br d, J=12.9 Hz, 1H), 3.34-3.51 (m, 1H), 2.93-3.11 (m, 2H), 2.42 (dt, J=13.7, 6.8 Hz, 1H), 1.44 (s, 9H), 1.32 (d, J=6.6 Hz, 3H), 1.13 (br d, J=6.6 Hz, 3H), 1.04 (d, J=6.8 Hz, 3H), 0.97 (d, J=6.8 Hz, 3H). m/z (ESI, +ve ion): 526.2 (M+H)+.
Step 5: (P)-tert-Butyl (2R,5S)-4-(1-(2-allyl-6-isopropylphenyl)-7-(2-allylphenyl)-6-chloro-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylateA mixture of (P)-tert-butyl (2R,5S)-4-(1-(2-allyl-6-isopropylphenyl)-6,7-dichloro-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (250 mg, 0.43 mmol), 2-(2-allylphenyl)-4,4,5,5-tetramethyl-1,3,2-dioxaborolane (156 mg, 0.64 mmol), tetrakis(triphenylphosphine)palladium (49.3 mg, 0.04 mmol), and sodium carbonate (226 mg, 2.13 mmol) in 1,4-dioxane (1.5 mL)/water (0.8 mL) was stirred at 90° for 1 h. The resulting mixture was evaporated to dryness. The resulting crude product was purified by silica gel chromatography (0-50% of EtOAc/heptane) to provide (P)-tert-butyl (2R,5S)-4-(1-(2-allyl-6-isopropylphenyl)-7-(2-allylphenyl)-6-chloro-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (169 mg, 0.25 mmol, 59.5% yield) a light yellow solid. 1H NMR (400 MHz, DMSO-d6) δ 8.38 (s, 1H), 7.31-7.40 (m, 1H), 7.19-7.31 (m, 4H), 7.06-7.14 (m, 2H), 5.60-5.75 (m, 1H), 5.49 (ddt, J=16.9, 10.1, 6.7, 6.7 Hz, 1H), 4.74-4.91 (m, 5H), 4.22-4.43 (m, 1H), 4.09 (br d, J=13.9 Hz, 1H), 3.81-3.90 (m, 1H), 3.70 (dd, J=13.5, 2.3 Hz, 1H), 3.38-3.58 (m, 1H), 2.90-3.14 (m, 4H), 2.43-2.47 (m, 1H), 1.45 (s, 9H), 1.34 (d, J=6.4 Hz, 3H), 1.16 (br d, J=6.4 Hz, 3H), 1.03 (d, J=6.8 Hz, 3H), 0.90 (d, J=6.8 Hz, 3H). m/z (ESI, +ve ion): 668.2 (M+H)+.
Step 6: (P)-tert-Butyl (2R,5S)-4-(26-chloro-16-isopropyl-22-oxo-21,22-dihydro-2(1,7)-pyrido[2,3-d]pyrimidina-1,3(1,2)-dibenzenacycloheptaphan-5-en-24-yl)-2,5-dimethylpiperazine-1-carboxylateA mixture of Grubbs Catalyst, 2nd generation (tricyclohexylphosphine[1,3-bis(2,4,6-trimethylphenyl)-4,5-dihydroimidazol-2-ylidene][benzylidine]rut) (43 mg, 0.05 mmol, Sigma-Aldrich Corporation), (P)-tert-butyl (2R,5S)-4-(1-(2-allyl-6-isopropylphenyl)-7-(2-allylphenyl)-6-chloro-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (168 mg, 0.25 mmol) in dichloromethane (14 mL) was stirred at 450 for 1 h. The resulting mixture was evaporated to dryness. The resulting crude product was purified by silica gel chromatography (0-50% of EtOAc/heptane) to provide (P)-tert-butyl (2R,5S)-4-(26-chloro-16-isopropyl-22-oxo-21,22-dihydro-2(1,7)-pyrido[2,3-d]pyrimidina-1,3(1,2)-dibenzenacycloheptaphan-5-en-24-yl)-2,5-dimethylpipemzine-1-carboxylate (120 mg, 0.19 mmol, 74.6% yield) as a light yellow solid. 1H NMR (400 MHz, DMSO-d6) δ 8.41-8.48 (m, 1H), 7.22-7.40 (m, 5H), 7.04-7.14 (m, 2H), 4.86-4.95 (m, 1H), 4.80-4.84 (m, 1H), 4.17-4.36 (m, 1H), 3.93-4.04 (m, 1H), 3.85-3.91 (m, 1H), 3.50-3.75 (m, 2H), 3.22-3.29 (m, 1H), 3.02 (br dd, J=15.8, 3.3 Hz, 1H), 2.86 (br dd, J=15.0, 9.0 Hz, 1H), 2.61-2.80 (m, 2H), 2.52-2.57 (m, 1H), 1.45 (s, 9H), 1.27 (br d, J=5.0 Hz, 3H), 1.07 (br d, J=6.8 Hz, 6H), 0.93 (d, J=6.8 Hz, 3H). m/z (ESI, +ve ion): 640.2 (M+H)+.
Step 7: A mixture of (P)-(9Z)-19-Chloro-22-((2S,5R)-2,5-dimethyl-4-(2-propenoyl)-1-piperazinyl)-3-(2-propanyl)-1,23,26-triazapentacyclo[16.6.2.0˜2,7˜.0˜12,17˜.0˜21,25˜]hexacosa-2,4,6,9,12,14,16,18,20,22,25-undecaen-24-one and (P)-19-chloro-22-((2S,5R)-2,5-dimethyl-4-(2-propenoyl)-1-piperazinyl)-3-(2-propanyl)-1,23,26-triazapentacyclo[16.6.2.0˜2,7˜.0˜12,17˜.0˜21,25˜]hexacosa-2,4,6,9,12,14,16,18,20,22,25-undecaen-24-oneTo a solution of (P)-tert-butyl (2R,5S)-4-(26-chloro-16-isopropyl-22-oxo-21,22-dihydro-2(1,7)-pyrido[2,3-d]pyrimidina-1,3(1,2)-dibenzenacycloheptaphan-5-en-24-yl)-2,5-dimethylpiperazine-1-carboxylate (120 mg, 0.19 mmol) in dichloromethane (2.0 mL) was treated with 2,2,2-trifluoroacetic acid (2.0 mL, 0.19 mmol) at it and stirred for 1.5 h. The reaction went to completion and the resulting mixture was concentrated to afford (P)-26-chloro-24-((2S,5R)-2,5-dimethylpiperazin-1-yl)-16-isopropyl-21,22-dihydro-2(1,7)-pyrido[2,3-d]pyrimidina-1,3(1,2)-dibenzenacycloheptaphan-5-en-22-one, m/z (ESI, +ve ion): 540.2 (M+H)+.
A mixture of the above crude product and DIPEA (0.2 mL, 0.94 mmol) in dichloromethane (2.0 mL) was added acryloyl chloride (1.1 M in DCM, 0.2 mL, 0.19 mmol) at 0° C. and stirred for 5 min. The resulting mixture was evaporated to dryness. The resulting crude product was purified by silica gel chromatography (0-100% of EtOAc/heptane) to provide a mixture of (P)-(9Z)-19-chloro-22-((2S,5R)-2,5-dimethyl-4-(2-propenoyl)-1-piperazinyl)-3-(2-propanyl)-1,23,26-triazapentacyclo[16.6.2.0˜2,7˜.0˜12,17˜.0˜21,25˜]hexacosa-2,4,6,9,12,14,16,18,20,22,25-undecaen-24-one and (P)-19-chloro-22-((2S,5R)-2,5-dimethyl-4-(2-propenoyl)-1-piperazinyl)-3-(2-propanyl)-1,23,26-triazapentacyclo[16.6.2.0˜2,7˜.0˜12,17˜.0˜21,25˜]hexacosa-2,4,6,9,12,14,16,18,20,22,25-undecaen-24-one (1:6 ratio, 94 mg, 0.16 mmol, 84% yield) as a light yellow foam. 1H NMR (400 MHz, DMSO-d6) δ 8.48 (br d, J=8.7 Hz, 1H), 7.22-7.37 (m, 5H), 7.05-7.17 (m, 2H), 6.76-6.93 (m, 1H), 6.19 (dd, J=16.7, 2.2 Hz, 1H), 5.72-5.80 (m, 1H), 4.95 (br s, 1H), 4.84 (br d, J=4.6 Hz, 1H), 4.40-4.77 (m, 1H), 3.56-4.18 (m, 4H), 3.23-3.29 (m, 1H), 3.03 (br dd, J=15.4, 3.2 Hz, 1H), 2.83-2.93 (m, 1H), 2.74-2.82 (m, 1H), 2.64-2.73 (m, 1H), 2.54-2.60 (m, 1H), 1.27 (br dd, J=18.1, 6.5 Hz, 3H), 1.05-1.21 (m, 6H), 0.94 (d, J=6.8 Hz, 3H). m/z (ESI, +ve ion): 594.2 (M+H)+.
Section 2—Individual Examples
A mixture of tert-butyl (2R,5S)-4-((2,5-dichloro-6-(2-fluorophenyl)pyridin-3-yl)(imino)methyl)-2,5-dimethylpiperazine-1-carboxylate (Intermediate 165, 1.30 g, 2.70 mmol) and neopentylamine (1.27 mL, 10.80 mmol) was heated at 110° C. for 3 days. The reaction mixture was purified on silica gel chromatography using 0-5% MeOH in DCM to afford tert-butyl (2R,5S)-4-((5-chloro-6-(2-fluorophenyl)-2-(neopentylamino)pyridin-3-yl)(imino)methyl)-2,5-dimethylpiperazine-1-carboxylate (1.10 g, 2.07 mmol, 77.0% yield). m/z (ESI, +ve ion): 532.3 (M+H)+.
Step 2: tert-Butyl (2R,5S)-4-((E)-(5-chloro-6-(2-fluorophenyl)-2-(neopentylamino)pyridin-3-yl)(cyanoimino)methyl)-2,5-dimethylpiperazine-1-carboxylateTo a solution of tert-butyl (2R,5S)-4-((5-chloro-6-(2-fluorophenyl)-2-(neopentylamino)pyridin-3-yl)(imino)methyl)-2,5-dimethylpiperazine-1-carboxylate (0.600 g, 1.128 mmol) and triethylamine (0.792 mL, 5.64 mmol) in THF (3 mL) at r.t. was added cyanogen bromide solution (1.503 mL, 4.51 mmol) dropwise. The reaction mixture was stirred at r.t. for 30 min. The reaction was diluted with water and extracted with EtOAc (3×). The combined organics were dried (Na2SO4) and concentrated to afford crude tert-butyl (2R,5S)-4-((E)-(5-chloro-6-(2-fluorophenyl)-2-(neopentylamino)pyridin-3-yl)(cyanoimino)methyl)-2,5-dimethylpiperazine-1-carboxylate (0.170 g, 0.305 mmol, 27.1% yield). The crude was used in the next step without further purification. m/z (ESI, +ve ion): 557.3 (M+H)+.
Step 3: 1-((2R,5S)-4-(6-Chloro-7-(2-fluorophenyl)-2-imino-1-neopentyl-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazin-1-yl)prop-2-en-1-oneTFA (0.803 mL, 10.77 mmol) was added to a solution of tert-butyl (2R,5S)-4-((E)-(5-chloro-6-(2-fluorophenyl)-2-(neopentylamino)pyridin-3-yl)(cyanoimino)methyl)-2,5-dimethylpiperazine-1-carboxylate (0.30 g, 0.538 mmol) in dichloromethane (5 mL). The reaction was stirred at rt for 1 hour and concentrated under reduced pressure. The residue was suspended in DCM (5 mL), cooled to 0° C., and treated with TEA (0.078 mL, 0.538 mmol) followed by acryloyl chloride (0.044 mL, 0.538 mmol). The reaction was warmed to r.t. and stirred for 10 min. The mixture was quenched with sat'd aqueous NaHCO3 and extracted with DCM (2×). The combined organic layers were concentrated and the residue purified on silica gel using 0-100% EtOAc/EtOH (3:1) in heptane to afford the intermediate N-((E)-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)(5-chloro-6-(2-fluorophenyl)-2-(neopentylamino)pyridin-3-yl)methylene)cyanamide (0.160 g, 0.313 mmol, 58.1% yield). To this intermediate was added MeOH (4 mL) and 5N HCl (1.077 mL, 5.38 mmol) and reaction stirred at 70° C. for 1 hour. The reaction was cool to r.t., pH adjusted to 10 with 2N NaOH solution and extracted with EtOAc (2×). The organic was dried and the crude product was purified with ISCO reverse phase hplc eluting with 10-70% CH3CN (0.1% TFA) in water (0.1% TFA) to afford 1-((2R,5S)-4-(6-chloro-7-(2-fluorophenyl)-2-imino-1-neopentyl-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazin-1-yl)prop-2-en-1-one (0.102 g, 0.200 mmol, 37.1% yield). m/z (ESI, +ve ion): 511.3 (M+H)+. 1H NMR (400 MHz, DICHLOROMETHANE-d2) δ 7.72 (s, 1H), 7.32-7.51 (m, 2H), 7.22 (t, J=7.12 Hz, 1H), 7.12 (t, J=9.13 Hz, 1H), 6.40-6.63 (m, 1H), 6.11-6.28 (m, 1H), 5.63 (br d, J=9.12 Hz, 1H), 5.25-5.35 (m, 1H), 4.80 (br s, 1H), 4.50 (br s, 1H), 4.32 (s, 2H), 4.12-4.24 (m, 1H), 3.50-3.78 (m, 3H), 1.11-1.27 (m, 6H), 0.84-0.94 (m, 9H). 19F NMR (376 MHz, DICHLOROMETHANE-d2) δ −112.65 (s, 1F).
Example 151 1-((2R,5S)-4-((Z)-6-Chloro-7-(2-fluorophenyl)-2-(methylimino)-1-neopentyl-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazin-1-yl)prop-2-en-1-one 2,2,2-trifluoroacetateTo a solution of 1-((2R,5S)-4-(6-chloro-7-(2-fluorophenyl)-2-imino-1-neopentyl-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazin-1-yl)prop-2-en-1-one, Example 150, (0.050 g, 0.098 mmol) in THF (4 mL) was added sodium hydride (0.012 ml, 0.294 mmol). After evolution of hydrogen gas, iodomethane (0.056 ml, 0.391 mmol) was added and the reaction stirred at r.t. for 1 hour and at 50° C. for 4 hours. The reaction was cooled, diluted with water and extracted with EtOAc (3×). The organic was concentrated and the residue purified by a reverse phase HPLC eluting with 10-70% CH3CN (0.1% TFA) in water (0.1% TFA) to afford 1-((2R,5S)-4-((Z)-6-chloro-7-(2-fluorophenyl)-2-(methylimino)-1-neopentyl-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazin-1-yl)prop-2-en-1-one 2,2,2-trifluoroacetate, as TFA salt. m/z (ESI, +ve ion): 525.4 (M+H)+. 1H NMR (400 MHz, CHLOROFORM-d) δ 10.18-10.34 (m, 1H), 8.09 (s, 1H), 7.50-7.60 (m, 2H), 7.35 (t, J=7.17 Hz, 1H), 7.21-7.25 (m, 1H), 6.49-6.67 (m, 1H), 6.37-6.47 (m, 1H), 5.80-5.88 (m, 1H), 5.53-5.75 (m, 1H), 4.92-5.17 (m, 2H), 4.30-4.59 (m, 2H), 3.63-3.85 (m, 2H), 3.16 (br s, 3H), 1.50-1.71 (m, 3H), 1.12-1.40 (m, 3H), 0.93 (s, 9H). 19F NMR (376 MHz, CHLOROFORM-d) δ −112.23 (s, 1F).
Example 152 4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-1-(2-isopropylphenyl)-7-phenyl-5,6,7,8-tetrahydropyrido[3,4-d]pyrimidin-2(1H)-oneA mixture of [2-(1-methylethyl)phenyl]-boronic acid (8.97 g, 54.7 mmol), [2-(1-methylethyl)phenyl]-boronic acid (8.97 g, 54.7 mmol), copper chloride (0.541 g, 5.47 mmol) and TEA (2.54 ml, 18.23 mmol) was purged with N2 followed by the addition of MeOH (100 mL) and the resulting mixture was stirred at r.t. overnight. The reaction was quenched with a 9:1 sat. NH4Cl/NH4OH, and extracted with DCM. The combined organics were dried over Na2SO4, filtered, concentrated and purified by chromatography on silica gel using 0-5% MeOH in DCM to afford 3-((2-isopropylphenyl)amino)isonicotinamide (0.97 g, 3.80 mmol, 10.42% yield) as a yellow solid. m/z (ESI, +ve ion): 256 (M+H)+. 1H NMR (400 MHz, DMSO-d6) δ 9.65 (s, 11H), 8.32-8.38 (m, 1H), 8.20 (s, 1H), 7.96 (d, J=5.2 Hz, 1H), 7.78 (br s, 1H), 7.60 (d, J=5.2 Hz, 1H), 7.39 (dd, J=7.6, 1.6 Hz, 1H), 7.28-7.32 (m, 1H), 7.15-7.25 (m, 2H), 3.04-3.19 (m, 1H), 1.19 (d, J=6.8 Hz, 6H).
Step 2: 1-(2-Isopropylphenyl)pyrido[3,4-d]pyrimidine-2,4(1H,3H)-dioneA mixture of 3-((2-isopropylphenyl)amino)isonicotinamide (1.51 g, 5.91 mmol), pyridine (1.435 ml, 17.74 mmol) and CDI (2.88 g, 17.74 mmol) in MeCN (100 mL) was heated at 85° C. overnight. The mixture was quenched with sat. NaHCO3, and extracted with EtOAc. The combined organics were dried over Na2SO4. filtered, concentrated and purified by chromatography on silica gel using 0-50% EtOAc in heptane to afford 1-(2-isopropylphenyl)pyrido[3,4-d]pyrimidine-2,4(1H,3H)-dione (1.3 g, 4.62 mmol, 78% yield) as a white solid. m/z (ESI, +ve ion): 281.8 (M+H)+. 1H NMR (400 MHz, DMSO-d6) δ 12.03 (s, 1H), 8.48 (d, J=5.2 Hz, 1H), 7.92 (d, J=5.0 Hz, 1H), 7.70 (s, 1H), 7.54-7.66 (m, 2H), 7.42-7.47 (m, 1H), 7.32-7.41 (m, 1H), 2.71-2.85 (m, 1H), 1.13 (d, J=6.8 Hz, 3H), 1.05 (d, J=6.8 Hz, 3H).
Step 3: tert-Butyl (2R,5S)-4-(1-(2-isopropylphenyl)-2-oxo-1,2-dihydropyrido[3,4-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylateA suspension of 1-(2-isopropylphenyl)pyrido[3,4-d]pyrimidine-2,4(1H,3H)-dione (0.186 g, 0.661 mmol) in toluene (3 mL) was added 1,1′-dimethyltriethylamine (1.155 mL, 6.61 mmol) and phosphorous oxychloride (0.308 mL, 3.31 mmol) and the resulting mixture was heated at 80° C. After 5 min. the mixture went into solution and the heating continued for 30 min. LCMS showed complete conversion to desired intermediate. The reaction mixture was cooled to 0° C. and 10 equiv DIEA was added followed by (2R,5S)-tert-butyl 2,5-dimethylpiperazine-1-carboxylate (0.213 mL, 0.992 mmol). This mixture was stirred with warming to r.t. over 1 h at which time LCMS showed conversion to desired product. The mixture was poured into cold satd. NaHCO3 solution and stirred vigorously for 10 min. The mixture was extracted with EtOAc, the combined organics were dried over Na2SO4, filtered, concentrated and purified by chromatography on silica gel using 0-40% EtOAc in heptane to afford tert-butyl (2R,5S)-4-(1-(2-isopropylphenyl)-2-oxo-1,2-dihydropyrido[3,4-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.281 g, 0.588 mmol, 89% yield) as a light yellow foam. m/z (ESI, +ve ion): 477.8 (M+H)+. 1H NMR (400 MHz, DMSO-d6) δ 8.39 (dd, J=5.4, 2.9 Hz, 1H), 7.72-7.80 (m, 2H), 7.50-7.65 (m, 2H), 7.38-7.47 (m, 1H), 7.21-7.31 (m, 1H), 4.72-4.85 (m, 1H), 4.23-4.43 (m, 1H), 4.00-4.14 (m, 2H), 3.67-3.81 (m, 2H), 3.40-3.60 (m, 1H), 1.45 (s, 9H), 1.31 (dd, J=9.1, 6.6 Hz, 3H), 1.15-1.21 (m, 3H), 1.11 (dd, J=6.6, 4.8 Hz, 3H), 1.00 (dd, J=6.8, 4.8 Hz, 3H).
Step 4: 7-Benzyl-4-((2S,5R)-4-(tert-butoxycarbonyl)-2,5-dimethylpiperazin-1-yl)-1-(2-isopropylphenyl)-2-oxo-1,2-dihydropyrido[3,4-d]pyrimidin-7-iumA mixture of tert-butyl (2R,5S)-4-(1-(2-isopropylphenyl)-2-oxo-1,2-dihydropyrido[3,4-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.36 g, 0.754 mmol) and (bromomethyl)benzene (0.193 mL, 1.131 mmol) in acetone (20 mL) was heated to reflux for 1 h. Some product was observed, mostly starting material. More (bromomethyl)benzene (0.193 mL, 1.131 mmol) was added and the resulting mixture was heated to reflux overnight. The mixture was brought to r.t., concentrated and purified by chromatography on a small amount of silica gel using 0-10% MeOH in DCM to afford 7-benzyl-4-((2S,5R)-4-(tert-butoxycarbonyl)-2,5-dimethylpiperazin-1-yl)-1-(2-isopropylphenyl)-2-oxo-1,2-dihydropyrido[3,4-d]pyrimidin-7-ium (0.401 g, 0.705 mmol, 94% yield) as a yellow solid. m/z (ESI, +ve ion): 567.8 (M+H)+. 1H NMR (400 MHz, DMSO-d6) δ 8.84 (br d, J=6.8 Hz, 1H), 8.30-8.40 (m, 2H), 7.56-7.65 (m, 2H), 7.34-7.48 (m, 6H), 7.25 (d, J=8.1 Hz, 1H), 5.87-5.90 (m, 2H), 4.66-4.76 (m, 1H), 4.24-4.46 (m, 1H), 4.01-4.15 (m, 1H), 3.66-3.87 (m, 2H), 3.41-3.61 (m, 1H), 2.58-2.66 (m, 1H), 1.45 (s, 9H), 1.34 (t, J=5.5 Hz, 3H), 1.18 (dd, J=14.5, 6.8 Hz, 3H), 1.08 (d, J=6.8 Hz, 3H), 0.95 (dd, J=10.8, 6.8 Hz, 3H).
Step 5: tert-Butyl (2R,5′)-4-(7-benzyl-1-(2-isopropylphenyl)-2-oxo-1,2,5,6,7,8-hexahydropyrido[3,4-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate7-benzyl-4-((2S,5R)-4-(tert-butoxycarbonyl)-2,5-dimethylpiperazin-1-yl)-1-(2-isopropylphenyl)-2-oxo-1,2-dihydropyrido[3,4-d]pyrimidin-7-ium was dissolved in 80% aq. MeOH (20 mL) and brought to 0° C. Then, NaBH4 (0.570 g, 15.08 mmol) was added and the resulting mixture was heated to reflux for 20 min. The reaction went to completion, brought to r.t., carefully quenched with sat. NaHCO3 and extracted with DCM. The combined organics were dried over Na2SO4, filtered and concentrated to afford tert-butyl (2R,5S)-4-(7-benzyl-1-(2-isopropylphenyl)-2-oxo-1,2,5,6,7,8-hexahydropyrido[3,4-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate. m/z (ESI, +ve ion): 571.8 (M+H)+.
Step 6: tert-Butyl (2R,5S)-4-(1-(2-isopropylphenyl)-2-oxo-1,2,5,6,7,8-hexahydropyrido[3,4-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylateTo a solution of tert-butyl (2R,5S)-4-(7-benzyl-1-(2-isopropylphenyl)-2-oxo-1,2,5,6,7,8-hexahydropyrido[3,4-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.280 g, 0.490 mmol) in MeOH (15 mL) was added palladium 10 wt. % on activated carbon (0.365 g, 0.343 mmol) and ammonium formate (0.309 g, 4.90 mmol) and the resulting mixture was heated to reflux. After 20 min the starting material was consumed and desired mass was observed. The mixture was brought to r.t., filtered through celite, concentrated and purified by chromatography on silica gel using 0-100% 3:1EtOAc/EtOH in heptane to afford tert-butyl (2R,5S)-4-(1-(2-isopropylphenyl)-2-oxo-1,2,5,6,7,8-hexahydropyrido[3,4-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.105 g, 0.218 mmol, 44.5% yield) as a white solid. m/z (ESI, +ve ion): 481.8 (M+H)+. 1H NMR (400 MHz, DMSO-d6) δ 7.39-7.51 (m, 2H), 7.25-7.34 (m, 1H), 7.13-7.18 (m, 1H), 7.03-7.11 (m, 1H), 4.38-4.53 (m, 1H), 4.12-4.38 (m, 1H), 3.93-4.06 (m, 1H), 3.58-3.74 (m, 2H), 3.40-3.49 (m, 2H), 2.98-3.16 (m, 2H), 2.73-2.94 (m, 2H), 2.36-2.46 (m, 2H), 1.41-1.47 (m, 9H), 1.10-1.19 (m, 8H), 1.03-1.10 (m, 4H).
Steps 7 & 8: 4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-1-(2-isopropylphenyl)-7-phenyl-5,6,7,8-tetrahydropyrido[3,4-d]pyrimidin-2(1H)-one, 3386982A solution of tert-butyl (2R,5S)-4-(1-(2-isopropylphenyl)-2-oxo-1,2,5,6,7,8-hexahydropyrido[3,4-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.060 g, 0.125 mmol) in acetonitrile (2 mL) was added to a stirring mixture of 2-(trimethylsilyl)phenyl triflate (0.056 g, 0.187 mmol) and cesium fluoride (0.057 g, 0.374 mmol) in acetonitrile (2 mL). The reaction mixture was stirred at r.t. for 1 hour, concentrated, diluted with water and extracted with EtOAc. The organic was concentrated to give a crude tert-butyl (2R,5S)-4-(1-(2-isopropylphenyl)-2-oxo-7-phenyl-1,2,5,6,7,8-hexahydropyrido[3,4-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate. m/z (ESI, +ve ion): 558.3 (M+H)+. This crude intermediate was dissolved in DCM (2 mL) and treated with TFA (0.288 mL, 3.74 mmol). The resulting mixture was stirred at r.t. for 1 hour and then concentrated in vacuo. The residue was suspended in DCM (2 mL) and treated with TEA (0.087 mL, 0.623 mmol) followed by acryloyl chloride (0.020 mL, 0.249 mmol). The reaction was stirred at r.t. for 10 minutes, quenched with water, and extracted with DCM. The organic was concentrated and the residue purified with ISCO using 0-100% EtOAc/EtOH (3:1) in heptane to afford 4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-1-(2-isopropylphenyl)-7-phenyl-5,6,7,8-tetrahydropyrido[3,4-d]pyrimidin-2(11)-one (0.008 g, 7.82 μmol, 6.28% yield) as a mixture of atropisomers. m-z (ESI, +ve ion): 512.4 (M+H)+. 1H NMR (400 MHz, CHLOROFORM-d) δ 7.44-7.50 (m, 2H), 7.28-7.36 (m, 1H), 7.22 (t, J=7.88 Hz, 2H), 7.10-7.16 (m, 1H), 6.86 (t, J=7.26 Hz, 1H), 6.68 (br d, J=7.67 Hz, 2H), 6.35 (br t, J=15.96 Hz, 1H), 5.75 (br t, J=10.26 Hz, 1H), 4.85-5.02 (m, 1H), 4.19-4.44 (m, 1H), 3.89-4.05 (m, 1H), 3.75-3.89 (m, 1H), 3.49-3.74 (m, 4H), 3.30-3.46 (m, 1H), 3.03-3.28 (m, 1H), 2.80-2.93 (m, 1H), 2.54-2.80 (m, 2H), 1.77 (td, J=6.63, 13.27 Hz, 1H), 1.17-1.31 (m, 12H).
Example 153 7-(2,4-Difluorophenyl)-1-(4,6-diisopropylpyrimidin-5-yl)-4-[(2S,5R)-2,5-dimethyl-4-prop-2-enoyl-piperazin-1-yl]-6-fluoro-pyrido[2,3-d]pyrimidin-2-oneTo a 250-mL round-bottomed flask was added 2,6-dichloro-5-fluoronicotinamide (Intermediate S, 3.55 g, 16.7 mmol) and oxalyl chloride (12.5 mL, 25.1 mmol) in tetrahydrofuran (33.5 mL). The flask was fitted with a Findenser, and the mixture was stirred and heated at 80° C. for 1 h. The reaction mixture was concentrated in vacuo. The crude mixture was carried into the next step of the synthesis, without further purification to prevent decomposition.
To a 250-mL round-bottomed flask was added (2,6-dichloro-5-fluoronicotinoyl)carbamoyl isocyanate (crude material from previous step) in tetrahydrofuran (33.5 mL). Then a solution of 4,6-diisopropylpyrimidin-5-amine (Intermediate U, 3.1 g, 17.5 mmol) in THF (10 mL) was added dropwise into the reaction mixture. The mixture was allowed to stir under an inert (N2) atmosphere for 1.5 h. The reaction mixture was concentrated in vacuo. The crude material was absorbed onto a plug of silica gel and purified by chromatography through a Interchim (25 micron) silica-gel column (220 grams), eluting with a gradient of 0-40% EtOAc/heptane, to afford 2,6-dichloro-N-((4,6-diisopropylpyrimidin-5-yl)carbamoyl)-5-fluoronicotinamide (4.2 g, 10.3 mmol, 61.7% yield) as light-yellow solid. 1H NMR (400 MHz, DMSO-d6) δ 11.41 (br s, 1H) 9.66 (br s, 1H) 8.99 (s, 1H) 8.55 (br d, J=7.88 Hz, 1H) 3.21-3.28 (m, 2H) 1.17 (d, J=6.63 Hz, 12H). m/z (ESI, +ve ion): 414.0 (M+H)+.
Step 2. 7-Chloro-1-(4,6-diisopropylpyrimidin-5-yl)-6-fluoropyrido[2,3-d]pyrimidine-2,4(1H,3H)-dioneTo a 250-mL round-bottomed flask was added 2,6-dichloro-N-((4,6-diisopropylpyrimidin-5-yl)carbamoyl)-5-fluoronicotinamide (4.0 g, 9.6 mmol) in tetrahydrofuran (48.3 mL). The reaction mixture was cooled to 0° C. with a wet ice/water bath. Then potassium bis(trimethylsilyl)amide, IM solution in tetrahydrofuran (12.0 mL, 12.0 mmol) was added via an addition funnel dropwise to the reaction mixture over 5 min. The ice bath was removed and the reaction mixture was allowed to slowly warm to ambient temperature, while stirred under an inert (N2) atmosphere for 1 h. More KHMDS (0.5 eq; 6 mL) was added dropwise to the reaction mixture. The reaction mixture was quenched with sat. aq. NH4Cl (50 mL), then the mixture was diluted with 3:1 EtOAc/MeOH and brine solution. The layers were separated and the aqueous layer was extracted with EtOAc. The combined organic extracts were dried over MgSO4, filtered and concentrated in vacuo. This afforded 7-chloro-1-(4,6-diisopropylpyrimidin-5-yl)-6-fluoropyrido[2,3-d]pyrimidine-2,4(1H,3H)-dione (2.5 g, 6.8 mmol, 70.9% yield) as a tan solid. 1H NMR (400 MHz, DMSO-d6) δ 12.03-12.52 (m, 1H) 8.97-9.23 (m, 1H) 8.25-8.58 (m, 1H) 2.80 (dt, J=13.22, 6.56 Hz, 2H) 0.96 (d, J=6.63 Hz, 6H) 0.85 (d, J=6.63 Hz, 6H). m/z (ESL, +ve ion): 378.0 (M+H)+.
Step 3. 7-(2,4-Difluorophenyl)-1-(4,6-diisopropylpyrimidin-5-yl)-6-fluoropyrido[2,3-d]pyrimidine-2,4(1H,3H)-dioneTo a 100-mL round-bottomed flask was added 7-chloro-1-(4,6-diisopropylpyrimidin-5-yl)-6-fluoropyrido[2,3-d]pyrimidine-2,4(1H,3H)-dione (0.2 g, 0.6 mmol) and potassium acetate (0.195 g, 1.985 mmol) in 1,4-dioxane (3.3 mL). The reaction mixture was deoxygenated by bubbling (N2) gas into the mixture for 5 min. Then (1,1′-bis(diphenylphosphino) ferrocene) dichloropalladium (0.048 g, 0.066 mmol) was added to the reaction mixture. The mixture was stirred and heated at 95° C. for 10 min. Then 2,4-difluorobenzeneboronic acid (0.136 g, 0.860 mmol), followed by water (0.05 mL) was added to the reaction mixture. The reaction mixture was allowed to stir at 95° C. for 16 h. The reaction mixture was diluted with sat. aq. NH4Cl and EtOAc. The layers were separated and the aqueous layer was extracted with EtOAc. The combined organic extracts were dried over MgSO4, filtered and concentrated in vacuo. The crude material was absorbed onto a plug of silica gel and purified by chromatography through a Interchim (15 micron) silica-gel column (40 grams), eluting with a gradient of 0-90% EtOAc/heptane, to afford 7-(2,4-difluorophenyl)-1-(4,6-diisopropylpyrimidin-5-yl)-6-fluoropyrido[2,3-d]pyrimidine-2,4(1H,3H)-dione (0.2 g, 0.4 mmol, 74.7% yield) as light-yellow solid. 1H NMR (400 MHz, DMSO-d6) δ 12.27 (s, 1H) 9.13 (s, 1H) 8.47 (d, J=8.50 Hz, 1H) 7.37-7.45 (m, 1H) 7.19-7.33 (m, 2H) 2.97 (spt, J=6.57 Hz, 2H) 1.10 (d, J=6.63 Hz, 6H) 0.93 (d, J=6.63 Hz, 6H). m/z (ESI, +ve ion): 456.0 (M+H)+.
Step 4. tert-Butyl (2R,5S)-4-(7-(2,4-difluorophenyl)-1-(4,6-diisopropylpyrimidin-5-yl)-6-fluoro-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylateTo a 100-mL round-bottomed flask was added 7-(2,4-difluorophenyl)-1-(4,6-diisopropylpyrimidin-5-yl)-6-fluoropyrido[2,3-d]pyrimidine-2,4(1H,3H)-dione (0.2 g, 0.4 mmol) and n,n′-diisopropylethylamine (0.1 mL, 0.5 mmol) in acetonitrile (7.9 mL). Then phosphorous oxychloride (0.1 mL, 0.5 mmol) was added slowly to the reaction mixture. The flask was fitted with a Findenser, then the mixture was stirred and heated at 80° C. while under an inert (N2) atmosphere for 45 min. The reaction mixture was removed from the heat bath and allowed to cool to ambient temperature.
The reaction mixture was cooled to 0° C. with a wet ice/water bath, while stirred. Then DIPEA (0.3 mL) was added slowly to the reaction mixture. Then a mixture of (2R,5S)-1-Boc-2,5-dimethylpiperazine (0.1 g, 0.5 mmol, Astatech, San Diego, CA, USA) in MeCN (3 mL) was added slowly to the reaction mixture. The ice bath was removed and the reaction mixture was allowed to slowly warm to ambient temperature over 1 h. The mixture was diluted with EtOAc and sat. aq. NH4Cl, then the layers were separated. The aqueous layer was extracted with EtOAc and brine. The combined organic extracts were dried over MgSO4, filtered and concentrated in vacuo. The crude material was absorbed onto a plug of silica gel and purified by chromatography through an Interchim (25 micron) silica-gel column (120 grams), eluting with a gradient of 0-100% EtOAc/heptane, to afford tert-butyl (2R,5S)-4-(7-(2,4-difluorophenyl)-1-(4,6-diisopropylpyrimidin-5-yl)-6-fluoro-2-oxo-1,2-dihydropyrido[2,3d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.2 g, 0.3 mmol, 83% yield) as tan solid. m/z (ESI, +ve ion): 652.1 (M+H)+.
Step 5. 4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-7-(2,4-difluorophenyl)-1-(4,6-diisopropylpyrimidin-5-yl)-6-fluoropyrido[2,3-d]pyrimidin-2(1H)-oneTo a 100-mL round-bottomed flask was added tert-butyl (2R,5S)-4-(7-(2,4-difluorophenyl)-1-(4,6-diisopropylpyrimidin-5-yl)-6-fluoro-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.2 g, 0.3 mmol) and trifluoroacetic acid (0.1 mL, 1.918 mmol) in dichloromethane (1.9 mL). The reaction mixture was stirred and heated at 38° C. for 2.5 h, while under an inert (N2) atmosphere. The reaction mixture was concentrated in vacuo. This material was carried directly into the next step of the synthesis, without further purification.
The previous residue was diluted with dichloromethane (1.9 mL), then the mixture was cooled to 0° C. with a wet ice bath. Then n,n′-diisopropylethylamine (0.8 mL, 4.6 mmol) was added to the reaction mixture and allowed the mixture to stir 2 min. Then acryloyl chloride (0.1 mL, 0.3 mmol) was added to the mixture dropwise. The mixture was diluted with DCM and sat. aq. NaHCO3, then the layers were separated. The aqueous layer was extracted with DCM. The combined organic extracts were dried over MgSO4, filtered and concentrated in vactuo. The crude material was absorbed onto a plug of silica gel and purified by chromatography through a Interchim (15 micron) silica-gel column (40 grams), eluting with a gradient of 0-5% MeOH/DCM. This afforded 4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-7-(2,4-difluorophenyl)-1-(4,6-diisopropylpyrimidin-5-yl)-6-fluoropyrido[2,3-d]pyrimidin-2(1H)-one (0.1 g, 0.2 mmol, 60.3% yield) as light-yellow solid. 1H NMR (400 MHz, DMSO-d) δ 9.10 (s, 1H) 8.38 (dd, J=9.64, 5.29 Hz, 1H) 7.21-7.45 (m, 3H) 6.77-6.91 (m, 1H) 6.19 (br d, J=18.24 Hz, 1H) 5.72-5.79 (m, 1H) 4.72-4.98 (m, 2H) 4.13-4.25 (m, 1H) 3.85 (br s, 2H) 2.66-2.77 (m, 2H) 1.33 (t, J=6.01 Hz, 3H) 1.25 (br d, J=6.63 Hz, 2H) 1.18 (br d, J=6.63 Hz, 2H) 1.09 (dd, J=6.63, 2.28 Hz, 6H) 0.94 (d, J=6.43 Hz, 6H). m/z (ESI, +ve ion): 606.4 (M+H)+.
Example 154 6-Chloro-1-(4,6-diisopropyl-2-methoxy-pyrimidin-5-yl)-4-[(2S,5R)-2,5-dimethyl-4-prop-2-enoyl-piperazin-1-yl]-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2-oneTo a 150-mL round-bottomed flask was added 2,5,6-trichloronicotinamide (Intermediate P, 0.7 g, 3.1 mmol) and oxalyl chloride (2.3 mL, 4.6 mmol) in tetrahydrofuran (6.2 mL). The flask was fitted with a Findenser, and the mixture was stirred and heated at 80° C. for 45 min. The reaction mixture was concentrated in vacuo. The crude mixture was carried into the next step of the synthesis, without further purification to prevent decomposition.
To a 100-mL round-bottomed flask was added (2,5,6-trichloronicotinoyl)carbamoyl isocyanate (crude material from previous step) in tetrahydrofuran (6.2 mL). The reaction mixture was cooled to −10° C. with a dilute acetone/dry ice bath, then a solution of 4,6-diisopropyl-2-methoxypyrimidin-5-amine (Intermediate I-36, 0.6 g, 3.2 mmol) in THF (5 mL) was added to the reaction mixture. The mixture was allowed to stir under an inert (N2) atmosphere for 1 h. The reaction mixture was concentrated in vacuo. The crude material was absorbed onto a plug of silica gel and purified by chromatography through a Interchim (25 micron) silica-gel column (220 grams), eluting with a gradient of 0-40% EtOAc/heptane, to provide 2,5,6-trichloro-N-((4,6-diisopropyl-2-methoxypyrimidin-5-yl)carbamoyl)nicotinamide as off-white solid. m/z (ESI, +ve ion): 460.1 (M+H)+.
Step 2. 6,7-Dichloro-1-(4,6-diisopropyl-2-methoxypyrimidin-5-yl)pyrido[2,3-d]pyrimidine-2,4(1H,3H)-dioneTo a 250-mL round-bottomed flask was added 2,5,6-trichloro-N-((4,6-diisopropyl-2-methoxypyrimidin-5-yl)carbamoyl)nicotinamide (1.0 g, 2.2 mmol) in tetrahydrofuran (11.4 mL). Then potassium bis(trimethylsilyl)amide, IM solution in tetrahydrofuran (2.8 mL, 2.8 mmol) was added via syringe dropwise to the reaction mixture. The reaction mixture was allowed to stir under an inert (N2) atmosphere for 30 min. The reaction mixture was quenched with sat. aq. NH4Cl (10 mL), then the mixture was diluted with 3:1 EtOAc/MeOH and brine solution. The layers were separated and the aqueous layer was extracted with EtOAc. The combined organic extracts were dried over MgSO4. filtered and concentrated in vacuo. The crude material was absorbed onto a plug of silica gel and purified by chromatography through an Interchim (25 micron) silica-gel column (80 grams). eluting with a gradient of 0-40% EtOAc/heptane This afforded 6,7-dichloro-1-(4,6-diisopropyl-2-methoxypyrimidin-5-yl)pyrido[2,3-d]pyrimidine-2,4(1H,3H)-dione (0.2 g, 0.5 mmol) as tan solid. 1H NMR (400 MHz, DMSO-d6) δ 12.17-12.42 (m, 1H) 8.49-8.74 (m, 1H) 3.98 (s, 3H) 2.82-2.92 (m, 2H) 1.08 (d, J=6.63 Hz, 6H) 0.98 (d, J=6.63 Hz, 6H). m/z (ESI, +ve ion): 424.1 (M+H)+.
Step 3. tert-Butyl (2R,5S)-4-(6,7-dichloro-1-(4,6-diisopropyl-2-methoxypyrimidin-5-yl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylateTo a 100-mL round-bottomed flask was added 6,7-dichloro-1-(4,6-diisopropyl-2-methoxypyrimidin-5-yl)pyrido[2,3-d]pyrimidine-2,4(1H,3H)-dione (0.2 g, 0.5 mmol) and n,n′-diisopropylethylamine (0.1 mL, 0.7 mmol) in acetonitrile (7.9 mL). Then phosphorous oxychloride (0.1 mL, 0.7 mmol) was added slowly to the reaction mixture. The flask was fitted with a Findenser, then the mixture was stirred and heated at 80° C., while under an inert (N2) atmosphere for 45 min. The reaction mixture was removed from the heat bath and allowed to cool to ambient temperature. Then set aside for later use.
The previous reaction mixture was cooled to 0° C. with a wet ice/water bath, while stirred. Then DIPEA (1.5 mL) was added slowly to the reaction mixture. Then a mixture of (2R,5S)-1-Boc-2,5-dimethylpiperazine (0.1 g, 0.7 mmol, Astatech, San Diego, CA, USA) in MeCN (3 mL) was added slowly to the reaction mixture. The ice bath was removed and the overall mixture was allowed to slowly warm to ambient temperature over 1 h. The mixture was diluted with EtOAc and sat. aq. NH4Cl, then the layers were separated. The aqueous layer was extracted with EtOAc and brine. The combined organic extracts were dried over MgSO4, filtered and concentrated in vacuo. The crude material was absorbed onto a plug of silica gel and purified by chromatography through a Interchim (25 micron) silica-gel column (120 grams), eluting with a gradient of 0-100% EtOAc/heptane to afford tert-butyl (2R,5S)-4-(6,7-dichloro-1-(4,6-diisopropyl-2-methoxypyrimidin-5-yl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.1 g, 0.2 mmol, 37.5% yield) as tan solid. m/z (ESI, +ve ion): 620.1 (M+H)+.
Step 4. 4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-6,7-dichloro-1-(4,6-diisopropyl-2-methoxypyrimidin-5-yl)pyrido[2,3-d]pyrimidin-2(1H)-oneTo a 100-mL round-bottomed flask was added tert-butyl (2R,5S)-4-(6,7-dichloro-1-(4,6-diisopropyl-2-methoxypyrimidin-5-yl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.1 g, 0.2 mmol) and trifluoroacetic acid (0.1 mL, 2.1 mmol) in 1,2-dichloroethane (4.0 mL). The reaction mixture was stirred and heated at 70° C. for 1 h, while under an inert (N2) atmosphere. The reaction mixture was concentrated in vacuo. This material was carried directly into the next step of the synthesis, without further purification
The previous residue was diluted with DCM (4 mL), then the reaction mixture was cooled to 0° C. with a wet ice/water bath. Then N,N′-diisopropylethylamine (0.4 mL, 2.6 mmol) was added to the reaction mixture and allowed the mixture to stir 2 min. Then acryloyl chloride (0.1 mL, 0.2 mmol) was added to the mixture dropwise. The mixture was diluted with DCM and sat. aq. NaHCO3, then the layers were separated. The aqueous layer was extracted with DCM. The combined organic extracts were dried over MgSO4, filtered and concentrated in vacuo. The crude material was absorbed onto a plug of silica gel and purified by chromatography through a Interchim (25 micron) silica-gel column (40 grams), eluting with a gradient of 0-5% MeOH/DCM. This afforded 4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-6,7-dichloro-1-(4,6-diisopropyl-2-methoxypyrimidin-5-yl)pyrido[2,3-d]pyrimidin-2(1H)-one (0.1 g, 0.2 mmol, 92% yield) as tan solid. m/z (EST, +ve ion): 574.1 (M+H)+.
Step 5. 4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-1-(4,6-diisopropyl-2-methoxypyrimidin-5-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-oneTo a 100-mL round-bottomed flask was added 4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-6,7-dichloro-1-(4,6-diisopropyl-2-methoxypyrimidin-5-yl)pyrido[2,3-d]pyrimidin-2(1H)-one (0.1 g, 0.191 mmol) and potassium acetate (0.1 g, 0.5 mmol) in 1,4-dioxane (3.3 mL). The reaction mixture was deoxygenated by bubbling (N2) gas into the mixture for 5 min. Then (1,1′-bis(diphenylphosphino) ferrocene) dichloropalladium (0.1 g, 0.1 mmol) was added to the reaction mixture. The mixture was stirred and heated at 95° C. for 10 min. Then 2-fluorophenylboronic acid (0.1 g, 0.2 mmol), followed by water (0.1 mL) was added to the reaction mixture. The overall reaction mixture was allowed to stir at 95° C. for 16 h. The reaction mixture was diluted with sat. aq. NH4Cl and EtOAc. The layers were separated and the aqueous layer was extracted with EtOAc. The combined organic extracts were dried over MgSO4. filtered and concentrated in vacuo. The crude material was absorbed onto a plug of silica gel and purified by chromatography through an Interchim (15 micron) silica-gel column, eluting with a gradient of 0-4% MeOH/DCM, to afford 4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-1-(4,6-diisopropyl-2-methoxypyrimidin-5-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-one (0.1 g, 0.1 mmol, 24.71% yield) as white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.47 (d, J=3.94 Hz, 1H) 7.50-7.56 (m, 1H) 7.28-7.35 (m, 2H) 7.19-7.24 (m, 1H) 6.83 (td, J=17.00, 10.57 Hz, 1H) 6.19 (dd, J=16.79, 1.87 Hz, 1H) 5.73-5.78 (m, 1H) 4.72-4.94 (m, 2H) 4.13-4.24 (m, 1H) 3.91 (s, 3H) 3.83-3.88 (m, 1H) 3.17 (d, J=5.18 Hz, 1H) 2.58-2.71 (m, 2H) 1.34 (t, J=5.80 Hz, 3H) 1.25 (br d, J=6.63 Hz, 2H) 1.18 (d, J=6.84 Hz, 2H) 1.06 (dd, J=6.53, 3.84 Hz, 6H) 0.92 (dd, J=6.53, 2.80 Hz, 6H). m/z (ESI, +ve ion): 634.4 (M+H)+.
Example 155 5-[6-Chloro-4-[(2S,5R)-2,5-dimethyl-4-prop-2-enoyl-piperazin-1-yl]-7-(2-fluorophenyl)-2-oxo-pyrido[2,3-d]pyrimidin-1-yl]-4,6-diisopropyl-pyrimidine-2-carbonitrileTo a 100-mL round-bottomed flask was added 2,5-dichloro-6-(2-fluorophenyl)nicotinamide (Intermediate 99B, 0.55 g, 1.81 mmol) and oxalyl chloride (1.36 mL, 2.72 mmol) in tetrahydrofuran (9.07 mL). The flask was fitted with a Findenser, and mixture was stirred and heated at 80° C. for 45 min. The reaction mixture was concentrated in vacuo. The crude mixture was carried into the next step of the synthesis, without further purification to prevent decomposition.
To a 150-mL round-bottomed flask was added (2,5-Dichloro-6-(2-fluorophenyl)nicotinoyl)carbamoyl isocyanate (crude material from previous step) in tetrahydrofuran (9.07 mL). The reaction mixture was cooled to −10° C. with a dilute acetone/dry ice bath, then a solution of 5-amino-4,6-diisopropylpyrimidine-2-carbonitrile (Intermediate 219. 0.38 g 1.90 mmol) in THF (3 mL) was added to the reaction mixture. The mixture was allowed to stir under an inert (N2) atmosphere for 1 h. The reaction mixture was concentrated in vacuo. The crude material was triturated from EtOAc and heptane, then the solids were collected by filtration. The solids were washed with heptane. This afforded 2,5-dichloro-N-((2-cyano-4,6-diisopropylpyrimidin-5-yl)carbamoyl)-6-(2-fluorophenyl)nicotinamide (0.75 g, 1.45 mmol, 80% yield) as tan solid. 1H NMR (400 MHz, DMSO-d6) δ 11.57 (br s, 1H) 9.96 (br s, 1H) 8.63 (s, 1H) 7.52-7.64 (m, 2H) 7.37-7.43 (m, 2H) 1.20 (br d, J=6.63 Hz, 14H). m/z (ESI, +ve ion): 515.0 (M+H)+.
Step 2. 5-(6-Chloro-7-(2-fluorophenyl)-2,4-dioxo-3,4-dihydropyrido[2,3-d]pyrimidin-1(2H)-yl)-4,6-diisopropylpyrimidine-2-carbonitrileTo a 100-mL round-bottomed flask was added 2,5-dichloro-N-((2-cyano-4,6-diisopropylpyrimidin-5-yl)carbamoyl)-6-(2-fluorophenyl)nicotinamide (0.72 g, 1.39 mmol) in tetrahydrofuran (6.9 mL). Then potassium bis(trimethylsilyl)amide, IM solution in tetrahydrofuran (1.7 mL, 1.74 mmol) was added via an addition funnel dropwise to the reaction mixture over 5 min. The reaction mixture was allowed to stir under an inert (N2) atmosphere for 1 h. More KHMDS (0.5 eq; 0.6 mL) was added dropwise to the reaction mixture, until SM was mostly consumed. The reaction mixture was quenched with sat. aq. NH4Cl (50 mL), then the mixture was diluted with 3:1 EtOAc/MeOH and brine solution. The layers were separated and the aqueous layer was extracted with EtOAc. The combined organic extracts were dried over MgSO4, filtered and concentrated in vacuo. This afforded 5-(6-chloro-7-(2-fluorophenyl)-2,4-dioxo-3,4-dihydropyrido[2,3-d]pyrimidin-1(2H)-yl)-4,6-diisopropylpyrimidine-2-carbonitrile (0.65 g, 1.35 mmol, 97% yield) as tan solid. 1H NMR (400 MHz, DMSO-d6) δ 12.24 (br s, 1H) 8.59 (s, 1H) 7.49-7.54 (m, 1H) 7.25-7.34 (m, 2H) 7.16-7.25 (m, 1H) 3.00-3.21 (m, 2H) 1.09-1.15 (m, 6H) 0.94 (d6=6.63 Hz, 6H). m/z (ESI, +ve ion): 479.0 (M+H)+.
Step 3. tert-Butyl (2R,5S)-4-(6-chloro-1-(2-cyano-4,6-diisopropylpyrimidin-5-yl)-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylateTo a 100-mL round-bottomed flask was added 5-(6-chloro-7-(2-fluorophenyl)-2,4-dioxo-3,4-dihydropyrido[2,3-d]pyrimidin-1(2H)-yl)-4,6-diisopropylpyrimidine-2-carbonitrile (0.60 g, 1.25 mmol) and N,N′-diisopropylethylamine (0.28 mL, 1.62 mmol) in acetonitrile (6.26 mL). Then phosphorous oxychloride (0.14 mL, 1.50 mmol) was added slowly to the reaction mixture. The flask was fitted with a Findenser, then the mixture was stirred and heated at 80° C., while under an inert (N2) atmosphere for 45 min. Another aliquot of N,N′-diisopropylethylamine (0.28 mL, 1.62 mmol) and phosphorous oxychloride (0.14 mL, 1.50 mmol) was added to the reaction mixture, then allowed the mixture to stir 10 min. The reaction mixture was removed from the heat bath and allowed to cool to ambient temperature.
The previous reaction mixture was cooled to 0° C. with a wet ice/water bath, while stirred. Then DIPEA (2.4 mL) was added slowly to the mixture. Then a mixture of (2R,5S)-1-Boc-2,5-dimethylpiperazine (0.33 g, 1.56 mmol, Astatech, San Diego, CA, USA) in MeCN (3 mL) was added slowly to the reaction mixture. The ice bath was removed and the overall mixture was allowed to slowly warm to ambient temperature over 1 h. Another aliquot of DIPEA (0.6 mL) and (2R,5S)-1-Boc-2,5-dimethylpiperazine (0.33 g, 1.56 mmol) in MeCN (2 mL) was added to the mixture, then allowed the mixture to stir an additional 10 min. The mixture was diluted with EtOAc and sat. aq. NH4Cl, then the layers were separated. The aqueous layer was extracted with EtOAc. The combined organic extracts were dried over MgSO4, filtered and concentrated in vacuo. The crude material was absorbed onto a plug of silica gel and purified by chromatography through a Interchim (25 micron) silica-gel column (40 grams), eluting with a gradient of 0-50% EtOAc/heptane, to afford tert-butyl (2R,5S)-4-(6-chloro-1-(2-cyano-4,6-diisopropylpyrimidin-5-yl)-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.53 g, 0.79 mmol, 63.7% yield) as a light yellow solid. 1H NMR (400 MHz, DMSO-d6) δ 8.49 (s, 1H) 7.50-7.56 (m, 1H) 7.27-7.35 (m, 2H) 7.17-7.24 (m, 1H) 4.86 (br s, 1H) 4.26-4.43 (m, 1H) 4.22 (br d, J=13.48 Hz, 1H) 3.86 (br d, J=13.68 Hz, 1H) 3.72 (br d, J=13.06 Hz, 1H) 3.43-3.61 (m, 1H) 2.75-2.93 (m, 2H) 1.45 (s, 9H) 1.35-1.39 (m, 3H) 1.18 (br d, J=6.63 Hz, 3H) 1.10 (dd, J=6.63, 2.70 Hz, 6H) 0.95 (dd, J=6.63, 2.49 Hz, 6H). m/z (ESI, +ve ion): 675.1 (M+H)+.
Step 4. 5-(4-((2S5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-7-(2-fluorophenyl)-2-oxopyrido[2,3-d]pyrimidin-1(2H)-yl)-4,6-diisopropylpyrimidine-2-carbonitrileTo a 100-mL round-bottomed flask was added tert-butyl (2R,5S)-4-(6-chloro-1-(2-cyano-4,6-diisopropylpyrimidin-5-yl)-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.53 g, 0.78 mmol) and trifluoroacetic acid (0.58 mL, 7.85 mmol) in 1,2-dichloroethane (3.9 mL). The reaction mixture was stirred and heated at 30° C. for 1 h, while under an inert (N2) atmosphere. The reaction mixture was concentrated in vacuo. This material was carried directly into the next step of the synthesis, without further purification.
The previous residue was diluted with DCM (4 mL), then the reaction mixture was cooled to 0° C. with a wet ice bath. Then N,N′-diisopropylethylamine (1.64 mL, 9.42 mmol) was added to the reaction mixture and allowed the mixture to stir 2 min. Then acryloyl chloride (0.06 mL, 0.785 mmol) was added to the mixture dropwise. The mixture was diluted with DCM and sat. aq. NaHCO3, then the layers were separated. The aqueous layer was extracted with DCM. The combined organic extracts were dried over MgSO4, filtered and concentrated in vacuo. The crude material was absorbed onto a plug of silica gel and purified by chromatography through a Interchim (25 micron) silica-gel column (40 grams), eluting with a gradient of 0-5% MeOH/CHCl3. This afforded 5-(4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-7-(2-fluorophenyl)-2-oxopyrido[2,3-d]pyrimidin-1(2H)-yl)-4,6-diisopropylpyrimidine-2-carbonitrile (0.28 g, 0.44 mmol, 56.7% yield) as white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.51 (d, J=6.66 Hz, 1H) 7.48-7.55 (m, 1H) 7.18-7.33 (m, 3H) 6.77-6.90 (m, 1H) 6.19 (br d, J=16.79 Hz, 1H) 5.72-5.78 (m, 1H) 4.75-4.99 (m, 2H) 4.19-4.36 (m, 1H) 3.79-3.96 (m, 2H) 2.76-2.93 (m, 2H) 1.33-1.40 (m, 3H) 1.23-1.29 (m, 2H) 1.20 (br d, J=6.84 Hz, 2H) 1.07-1.13 (m, 6H) 0.93-0.99 (m, 6H). m/z (ESI, +ve ion): 629.1 (M+H)+.
Example 156 4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-1-(4,6-diisopropyl-2-(2-methoxyethoxy)pyrimidin-5-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-oneTo a 100-mL round-bottomed flask was added 2,5,6-trichloronicotinamide (Intermediate P, 1.00 g, 4.44 mmol) and oxalyl chloride (3.33 mL, 6.65 mmol) in tetrahydrofuran (22.1 mL). The flask was fitted with a Findenser, then the mixture was stirred and heated at 80° C. for 45 min. The reaction mixture was concentrated in vacuo. The crude mixture was carried into the next step of the synthesis, without further purification to prevent decomposition.
To a 150-mL round-bottomed flask was added (2,5,6-trichloronicotinoyl)carbamoyl isocyanate (crude material from previous step) in tetrahydrofuran (22.1 mL). The reaction mixture was cooled to −10° C. with a dilute acetone/dry ice bath, then a solution of 4,6-diisopropyl-2-(propylsulfonyl)pyrimidin-5-amine (Intermediate 220, 1.32 g, 4.66 mmol) in THF (5 mL) was added to the reaction mixture. The mixture was allowed to stir under an inert (N2) atmosphere for 1 h. The reaction mixture was concentrated in vacuo. The crude material was triturated from DCM and heptane and the solids were collected by filtration. The solids were washed with heptane. This afforded 2,5,6-trichloro-N-((4,6-diisopropyl-2-(propylsulfonyl)pyrimidin-5-yl)carbamoyl)nicotinamide (2.30 g, 4.28 mmol, 97% yield) as light-yellow solid. 1H NMR (400 MHz, DMSO-d6) δ 11.52 (s, 1H) 9.88 (br s, 1H) 8.69 (s, 1H) 5.75 (s, 2H) 3.60-3.66 (m, 2H) 1.68-1.80 (m, 2H) 1.21 (d, J=6.84 Hz, 12H) 1.00-1.05 (m, 3H). m/z (ESI, +ve ion): 536.0 (M+H)+.
Step 2. 6,7-Dichloro-1-(4,6-diisopropyl-2-(propylsulfonyl)pyrimidin-5-yl)pyrido[2,3-d]pyrimidine-2,4(1H,3H)-dioneTo a 250-mL round-bottomed flask was added 2,5,6-trichloro-N-((4,6-diisopropyl-2-(propylsulfonyl)pyrimidin-5-yl)carbamoyl)nicotinamide (2.30 g, 4.28 mmol) in tetrahydrofuran (48.3 mL). The reaction mixture was cooled to 0° C. in a wet ice/water bath. Then potassium bis(trimethylsilyl)amide, 1M solution in tetrahydrofuran (5.36 mL, 5.36 mmol) was added via an addition funnel, dropwise to the reaction mixture over 5 min. The ice bath was removed and the reaction mixture was allowed to slowly warm to ambient temperature, while stirred under an inert (N2) atmosphere for 1 h. More KHMDS (0.5 eq; 2 mL) was added dropwise to the reaction mixture. The reaction mixture was quenched with sat. aq. NH4Cl (50 mL), then the mixture was diluted with 3:1 EtOAc/MeOH and brine solution. The layers were separated and the aqueous layer was extracted with EtOAc. The combined organic extracts were dried over MgSO4, filtered and concentrated in vacuo. The residue was diluted with DCM (50 mL), then agitated 5 min. The mixture was filtered and the filtrate was collected, then concentrated in vacuo. This afforded 6,7-dichloro-1-(4,6-diisopropyl-2-(propylsulfonyl)pyrimidin-5-yl)pyrido[2,3-d]pyrimidine-2,4(1H,3H)-dione (1.82 g, 3.65 mmol, 85% yield) as a tan solid. 1H NMR (400 MHz, DMSO-d6) δ 12.32-12.59 (m, 1H) 8.50-8.81 (m, 1H) 3.67-3.74 (m, 2H) 3.13 (dt, J=13.22, 6.56 Hz, 2H) 1.78-1.87 (m, 2H) 1.23-1.24 (m, 3H) 1.11-1.14 (m, 6H) 1.03 (s, 6H). m/z (ESI, +ve ion): 500.0 (M+H)+.
Step 3. 6,7-Dichloro-1-(4,6-diisopropyl-2-(2-methoxyethoxy)pyrimidin-5-yl)pyrido[2,3-d]pyrimidine-2,4(1H,3H)-dioneTo a 100-mL round-bottomed flask was added 6,7-dichloro-1-(4,6-diisopropyl-2-(propylsulfonyl)pyrimidin-5-yl)pyrido[2,3-d]pyrimidine-2,4(1H,3H)-dione (0.45 g, 0.89 mmol) and sodium methoxyethoxide (0.44 g, 4.50 mmol) in 1,4-dioxane (4.0 mL). The reaction mixture was stirred and heated at 95° C. for 16 h. The flask was removed from the heat bath and the reaction mixture was allowed to cool to ambient temperature. The reaction mixture was concentrated in vacuo. The residue was diluted with DCM and filtered through a fine-fritted funnel and the filtrate (desired material) was collected. The crude material was absorbed onto a plug of silica gel and purified by chromatography through a Interchim (25 micron) silica-gel column (40 grams), eluting with a gradient of 0-45% EtOAc/heptane, to afford 6,7-dichloro-1-(4,6-diisopropyl-2-(2-methoxyethoxy)pyrimidin-5-yl)pyrido[2,3-d]pyrimidine-2,4(1H,3H)-dione (0.12 g, 0.26 mmol, 29.9% yield) as white solid. 1H NMR (400 MHz, DMSO-d6) δ 12.29 (s, 1H) 8.59 (s, 1H) 4.45-4.55 (m, 2H) 3.71-3.77 (m, 2H) 3.33-3.35 (m, 3H) 2.81-2.92 (m, 2H) 1.07 (d, J=6.63 Hz, 6H) 0.97 (d, J=6.63 Hz, 6H). m/z (ESI, +ve ion): 468.0 (M+H)+.
Step 4. 6-Chloro-1-(4,6-diisopropyl-2-(2-methoxyethoxy)pyrimidin-5-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidine-2,4(1H,3H)-dioneTo a 100-mL round-bottomed flask was added 6,7-dichloro-1-(4,6-diisopropyl-2-(2-methoxyethoxy)pyrimidin-5-yl)pyrido[2,3-d]pyrimidine-2,4(1H,3H)-dione (0.24 g, 0.51 mmol) and potassium acetate (0.15 g, 1.53 mmol) in 1,4-dioxane (3.31 mL). The reaction mixture was deoxygenated by bubbling (N2) gas into the mixture for 5 min. Then (1,1′-bis(diphenylphosphino) ferrocene) dichloropalladium (0.03 g, 0.05 mmol) was added to the reaction mixture. The reaction mixture was stirred and heated at 95° C. for 10 min. Then 2-fluorophenylboronic acid (0.08 g, 0.61 mmol), followed by water (0.05 mL) was added to the reaction mixture. The overall mixture was allowed to stir at 95° C. for 2 h. The reaction mixture was diluted with sat. aq. NH4Cl and EtOAc. The layers were separated and the aqueous layer was extracted with EtOAc. The combined organic extracts were dried over MgSO4, filtered and concentrated in vacuo. The crude material was absorbed onto a plug of silica gel and purified by chromatography through a Interchim (25 micron) silica-gel column (40 grams). eluting with a gradient of 0-10% MeOH/DCM, to afford 6-chloro-1-(4,6-diisopropyl-2-(2-methoxyethoxy)pyrimidin-5-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidine-2,4(1H,3H)-dione (0.22 g, 0.42 mmol, 83% yield) as tan solid. 1H NMR (400 MHz, DMSO-d6) δ 12.24 (br s, 1H) 8.57 (s, 1H) 7.47-7.55 (m, 1H) 7.25-7.35 (m, 2H) 7.17-7.23 (m. H) 4.39-4.49 (m, 2H) 3.63-3.73 (m, 2H) 3.29-3.30 (m, 3H) 2.80-2.94 (m, 2H) 1.08 (s, 6H) 0.91 (d, J=6.63 Hz, 6H). m/z (ESI, +ve ion): 528.0 (M+H)+.
Step 5. tert-Butyl (2R,5S)-4-(6-chloro-1-(4,6-diisopropyl-2-(2-methoxyethoxy)pyrimidin-5-yl)-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylateTo a 100-mL round-bottomed flask was added 6-chloro-1-(4,6-diisopropyl-2-(2-methoxyethoxy)pyrimidin-5-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidine-2,4(1H,3H)-dione (0.22 g, 0.41 mmol) and N,N′-diisopropylethylamine (0.09 mL, 0.54 mmol) in acetonitrile (2.08 mL). Then phosphorous oxychloride (0.04 mL, 0.50 mmol) was added slowly to the reaction mixture. The flask was fitted with a Findenser, then the mixture was stirred and heated at 80° C., while under an inert (N2) atmosphere for 45 min. The reaction mixture was removed from the heat bath and allowed to cool to ambient temperature.
The reaction mixture was cooled to 0° C. with a wet ice/water bath, while stirred. Then DIPEA (0.5 mL) was added slowly to the reaction mixture. Then a mixture of (2R,5S)-1-Boc-2,5-dimethylpiperazine (0.11 g, 0.52 mmol) in MeCN (1 mL) was added slowly to the reaction mixture. The ice bath was removed and the overall mixture was allowed to slowly warm to ambient temperature over 1 h. Another aliquot of DIPEA (0.6 mL) and (2R,5S)-1-Boc-2,5-dimethylpiperazine (0.11 g, 0.52 mmol) in MeCN (2 mL) was added to the mixture, then allowed the mixture to stir an additional 10 min. The mixture was diluted with EtOAc and sat. aq. NH4Cl, then the layers were separated. The aqueous layer was extracted with EtOAc. The combined organic extracts were dried over MgSO4, filtered and concentrated in vacuo. The crude material was absorbed onto a plug of silica gel and purified by chromatography through a Interchim (25 micron) silica-gel column (40 grams), eluting with a gradient of 0-5% MeOH/DCM, to afford tert-butyl (2R,5S)-4-(6-chloro-1-(4,6-diisopropyl-2-(2-methoxyethoxy)pyrimidin-5-yl)-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.24 g, 0.33 mmol, 80% yield) as tan solid. 1H NMR (400 MHz, DMSO-d6) δ 8.44 (s, 1H) 7.48-7.56 (m, 1H) 7.31 (br d, J=7.88 Hz, 2H) 7.17-7.25 (m, 1H) 4.82 (br s, 1H) 4.34-4.49 (m, 2H) 4.15 (br d, J=13.48 Hz, 1H) 3.86 (br s, 1H) 3.50-3.75 (m, 5H) 2.91-3.07 (m, 2H) 1.44-1.47 (m, 6H) 1.39 (s, 9H) 1.32-1.36 (m, 2H) 1.15-1.20 (m, 3H) 1.04-1.12 (m, 10H). m/z (ESI, +ve ion): 724.1 (M+H)+.
Step 6. 4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-1-(4,6-diisopropyl-2-(2-methoxyethoxy)pyrimidin-5-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-oneTo a 100-mL round-bottomed flask was added tert-butyl (2R,5S)-4-(6-chloro-1-(4,6-diisopropyl-2-(2-methoxyethoxy)pyrimidin-5-yl)-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.24 g, 0.33 mmol) and trifluoroacetic acid (0.24 mL, 3.31 mmol) in 1,2-dichloroethane (3.92 mL). The reaction mixture was stirred and heated at 70° C. for 2 h, while under an inert (N2) atmosphere. The reaction mixture was concentrated in vacuo. This material was carried directly into the next step of the synthesis, without further purification
The previous residue was diluted with DCM (4 mL), then the reaction mixture was cooled to 0° C. with a wet ice bath. Then N,N′-diisopropylethylamine (0.69 mL, 3.98 mmol) was added to the reaction mixture and allowed the mixture to stir 2 min. Then acryloyl chloride (0.02 mL, 0.3 mmol was added to the mixture dropwise. The mixture was diluted with DCM and sat. aq. NaHCO3, then the layers were separated. The aqueous layer was extracted with DCM. The combined organic extracts were dried over MgSO4, filtered and concentrated in vacuo. The crude material was absorbed onto a plug of silica gel and purified by chromatography through a Interchim (25 micron) silica-gel column (40 grams), eluting with a gradient of 0-4% MeOH/CHCl3. This afforded 4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-1-(4,6-diisopropyl-2-(2-methoxyethoxy)pyrimidin-5-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-one (0.07 g, 0.10 mmol, 32.0% yield) as white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.48 (d, J=4.35 Hz, 1H) 7.50-7.57 (m, 1H) 7.20-7.36 (m, 3H) 6.84 (td, J=17.10, 10.57 Hz, 1H) 6.20 (dd, J=16.59, 1.87 Hz, 1H) 5.73-5.79 (m, 1H) 4.74-4.95 (m, 2H) 4.38-4.55 (m, 3H) 4.12-4.28 (m, 1H) 3.80-3.95 (m, 2H) 3.66-3.71 (m, 2H) 3.29-3.31 (m, 3H) 2.55-2.70 (m, 2H) 1.31-1.39 (m, 3H) 1.26 (br d, J=6.63 Hz, 1H) 1.19 (d, J=6.63 Hz, 2H) 1.06 (dd, J=6.63, 3.52 Hz, 6H) 0.92 (br d, J=6.63 Hz, 6H). m/z (ESI, +ve ion): 678.4 (M+H)+.
Example 157 4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-1-(2-(2-(dimethylamino)ethoxy)-4,6-diisopropylpyrimidin-5-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-oneTo a 100-mL round-bottomed flask was added 2,5-dichloro-6-(2-fluorophenyl)nicotinamide (Intermediate 99B, 1.00 g, 3.30 mmol) and oxalyl chloride (2.47 mL, 4.95 mmol) in tetrahydrofuran (16.49 mL). The flask was fitted with a Findenser, and mixture was stirred and heated at 80° C. for 45 min. The reaction mixture was concentrated in vacuo. The crude mixture was carried into the next step of the synthesis, without further purification to prevent decomposition.
To a 100-mL round-bottomed flask was added (2,5-dichloro-6-(2-fluorophenyl)nicotinoyl)carbamoyl isocyanate (crude material from previous step) in tetrahydrofuran (16.55 mL). The reaction mixture was cooled to −10° C. with a dilute acetone/dry ice bath, then a solution of 4,6-diisopropyl-2-(propylsulfonyl)pyrimidin-5-amine (Intermediate 220, 0.98 g, 3.46 mmol) in THF (3 mL) was added to the reaction mixture. The reaction mixture was allowed to stir under an inert (N2) atmosphere for 1 h. The reaction mixture was concentrated in vacuo. The crude material was triturated from EtOAc and heptane, then the solids were collected by filtration. The solids were washed with heptane. This afforded 2,5-dichloro-N-((4,6-diisopropyl-2-(propylsulfonyl)pyrimidin-5-yl)carbamoyl)-6-(2-fluorophenyl)nicotinamide (1.705 g, 2.86 mmol, 87% yield) as light-yellow solid. 1H NMR (400 MHz, DMSO-d6) δ 11.56 (br s, 1H) 9.94 (br s, 1H) 8.64 (br s, 1H) 7.62 (s, 1H) 7.57 (br s, 1H) 7.40 (br s, 2H) 3.57-3.80 (m, 3H) 1.79 (br s, 2H) 1.22 (br s, 12H) 1.03 (br s, 4H). m/z (ESI, +ve ion): 596.0 (M+H)+.
Step 2. 6-Chloro-1-(4,6-diisopropyl-2-(propylsulfonyl)pyrimidin-5-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidine-2,4(1H,3H)-dioneTo a 150-mL round-bottomed flask was added 2,5-dichloro-N-((4,6-diisopropyl-2-(propylsulfonyl)pyrimidin-5-yl)carbamoyl)-6-(2-fluorophenyl)nicotinamide (1.48 g, 2.48 mmol) in tetrahydrofuran (12.44 mL). Then potassium bis(trimethylsilyl)amide, 1M solution in tetrahydrofuran (3.11 mL, 3.10 mmol) was added via an addition funnel dropwise to the reaction mixture over 5 min. The reaction mixture was allowed to stir under an inert (N2) atmosphere for 1 h. More KHMDS (0.5 eq; 2 mL) was added dropwise to the reaction mixture. The reaction mixture was quenched with sat. aq. NH4Cl (50 mL), then the mixture was diluted with 3:1 EtOAc/MeOH and brine solution. The layers were separated and the aqueous layer was extracted with EtOAc. The combined organic extracts were dried over MgSO4, filtered and concentrated in vacuo. This afforded 6-chloro-1-(4,6-diisopropyl-2-(propylsulfonyl)pyrimidin-5-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidine-2,4(1H,3H)-dione (1.34 g, 2.39 mmol, 97% yield) as light-yellow solid. 1H NMR (400 MHz, DMSO-d6) δ 8.60-8.64 (m, 1H) 7.48-7.54 (m, 1H) 7.23-7.33 (m, 3H) 7.15-7.21 (m, 1H) 3.61-3.67 (m, 2H) 3.13-3.19 (m, 2H) 1.66-1.74 (m, 2H) 1.21-1.23 (m, 3H) 1.13 (d, J=6.63 Hz, 6H) 0.96 (d, J=6.63 Hz, 6H). m/z (EST, +ve ion): 560.0 (M+H)+.
Step 3. 6-Chloro-1-(2-(2-(dimethylamino)ethoxy)-4,6-diisopropylpyrimidin-5-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidine-2,4(1H,3H)-dioneA resealable vial was charged with 6-chloro-1-(4,6-diisopropyl-2-(popylsulfonyl)pyrimidin-5-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidine-2,4(1H,3H)-dione (0.53 g, 0.94 mmol) and N,N′-dimethylethanolamine (1.91 mL, 18.93 mmol) in 1,4-dioxane (9.46 mL). The vial was sealed, then the reaction mixture was stirred and heated at 90° C. for 16 h. The reaction mixture was concentrated in vacuo. The crude material was absorbed onto a plug of silica gel and purified by chromatography through a Interchim (25 micron) silica-gel column (80 grams), eluting with a gradient of 0-20% MeOH/DCM, to afford 6-chloro-1-(2-(2-(dimethylamino)ethoxy)-4,6-diisopropylpyrimidin-5-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidine-2,4(1H,3H)-dione (0.255 g, 0.471 mmol, 49.8% yield) as light-yellow solid. 1H NMR (400 MHz, DMSO-d6) δ 12.03-12.41 (m, 1H) 8.57 (s, 1H) 7.48-7.55 (m, 1H) 7.26-7.35 (m, 2H) 7.17-7.23 (m, 1H) 4.39 (t, J=5.91 Hz, 2H) 2.88 (quin, J=6.63 Hz, 2H) 2.64 (br t, J=5.80 Hz, 2H) 2.22 (s, 6H) 1.07 (d, J=6.63 Hz, 6H) 0.91 (d, J=6.63 Hz, 6H). m/z (ESI, +ve ion): 541.1 (M+H)+.
Step 4. tert-Butyl (2R,5S)-4-(6-chloro-1-(2-(2-(dimethylamino)ethoxy)-4,6-diisopropylpyrimidin-5-yl)-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylateTo a 100-mL round-bottomed flask was added 6-chloro-1-(2-(2-(dimethylamino)ethoxy)-4,6-diisopropylpyrimidin-5-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidine-2,4(1H,3H)-dione (0.22 g, 0.40 mmol) and N,N′-diisopropylethylamine (0.18 mL, 1.05 mmol) in acetonitrile (4.07 mL). Then phosphorous oxychloride (0.04 mL, 0.48 mmol) was added to the reaction mixture, then the mixture was heated and stirred at 80° C. for 15 min, while under an inert (N2) atmosphere. The reaction mixture was removed from the heat bath and allowed to cool to rt.
The previous reaction mixture was cooled to 0° C. with a wet ice/water bath. Then DIPEA (2 mL) was added dropwise to the reaction mixture. Then a solution of (2R,5S)-tert-butyl 2,5-dimethylpiperazine-1-carboxylate (0.13 g, 0.61 mmol) in MeCN (1 mL) was added dropwise to the reaction mixture. The ice bath was removed and the mixture was allowed to warm to rt over 20 min. More DIPEA (2 mL) and (2R,5S)-tert-butyl 2,5-dimethylpiperazine-1-carboxylate (0.13 g, 0.61 mmol) was added to the reaction mixture and stirred an additional 10 min. The reaction mixture was diluted with EtOAc and sat. aq. NH4Cl. The aqueous layer was extracted with EtOAc. The combined organic extracts were dried over MgSO4, filtered and concentrated in vacuo. The crude material was absorbed onto a plug of silica gel and purified by chromatography through a Interchim (25 micron) silica-gel column (80 grams), eluting with a gradient of 0-25% 2M NH3·MeOH in CH2CL2, to afford tert-butyl (2R,5S)-4-(6-chloro-1-(2-(2-(dimethylamino)ethoxy)-4,6-diisopropylpyrimidin-5-yl)-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate as tan solid. The crude material (0.450 grams) was carried into the next step of the synthesis, without further purification. m/z (ESI, +ve ion): 737.2 (M+H)+.
Step 5. 4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-1-(2-(2-(dimethylamino)ethoxy)-4,6-diisopropylpyrimidin-5-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-oneTo a 100-mL round-bottomed flask was added tert-butyl (2R,5S)-4-(6-chloro-1-(2-(2-(dimethylamino)ethoxy)-4,6-diisopropylpyrimidin-5-yl)-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.30 g, 0.40 mmol) and trifluoroacetic acid (0.30 mL, 4.07 mmol) in 1,2-dichloroethane (4.07 mL). The reaction mixture was stirred and heated at 60° C. for 2 h, while under an inert (N2) atmosphere. The reaction mixture was concentrated in vacuo. This material was carried directly into the next step of the synthesis, without further purification.
The previous residue was diluted with DCM (4 mL), the reaction mixture was cooled to 0° C. with a wet ice bath. Then N,N′-diisopropylethylamine (0.85 mL, 4.88 mmol) was added to the reaction mixture and allowed the mixture to stir 2 min. Then acryloyl chloride (1.1M in THF) (0.37 mL, 0.40 mmol) was added to the mixture dropwise. The reaction mixture was diluted with DCM and sat. aq. NaHCO3, then the layers were separated. The aqueous layer was extracted with DCM. The combined organic extracts were dried over MgSO4, filtered and concentrated in vacuo. The crude material was absorbed onto a plug of silica gel and purified by chromatography through a Interchim (25 micron) silica-gel column (40 grams). eluting with a gradient of 0-25% MeOH/DCM. This afforded 4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-1-(2-(2-(dimethylamino)ethoxy)-4,6-diisopropylpyrimidin-5-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-one (0.110 g, 0.159 mmol, 39.1% yield) as tan solid. 1H NMR (400 MHz, DMSO-d6) δ 8.48 (br d, J=4.35 Hz, 1H) 7.48-7.58 (m, 1H) 7.20-7.36 (m, 3H) 6.76-6.91 (m, 1H) 6.16-6.23 (m, 1H) 5.71-5.80 (m, 1H) 4.81-4.93 (m, 1H) 4.57-4.63 (m, 2H) 4.42-4.53 (m, 1H) 4.13-4.24 (m, 1H) 3.79-3.94 (m, 2H) 3.39-3.45 (m, 2H) 2.77 (s, 6H) 2.61-2.73 (m, 2H) 1.34 (br t, J=5.70 Hz, 3H) 1.23-1.23 (m, 2H) 1.16-1.20 (m, 2H) 1.07 (dd, J=6.53, 4.25 Hz, 6H) 0.93 (dd, J=6.53, 3.63 Hz, 6H). m/z (ESI, +ve ion): 691.3 (M+H)+.
Example 158 4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-1-(4,6-diisopropyl-2-(propylsulfonyl)pyrimidin-5-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-oneTo a 100-mL round-bottomed flask was added 2,5-dichloro-6-(2-fluorophenyl)nicotinamide (Intermediate 99B, 1.00 g, 3.30 mmol) and oxalyl chloride (2.47 mL, 4.95 mmol) in tetrahydrofuran (16.49 mL). The flask was fitted with a Findenser, and mixture was stirred and heated at 80° C. for 45 min. The reaction mixture was concentrated in vacuo. The crude mixture was carried into the next step of the synthesis, without further purification to prevent decomposition.
To a 100-mL round-bottomed flask was added (2,5-dichloro-6-(2-fluorophenyl)nicotinoyl)carbamoyl isocyanate (crude material from previous step) in tetrahydrofuran (16.49 mL). The reaction mixture was cooled to −10° C. with a dilute acetone/dry ice bath, then a solution of 4,6-diisopropyl-2-(propylsulfonyl)pyrimidin-5-amine (Intermediate 220, 0.98 g, 3.46 mmol) in THF (3 mL) was added to the reaction mixture. The reaction mixture was allowed to stir under an inert (N2) atmosphere for 1 h. The reaction mixture was concentrated in vacuo. The crude material was triturated from EtOAc and heptane, then the solids were collected by filtration. The solids were washed with heptane. This afforded 2,5-dichloro-N-((4,6-diisopropyl-2-(propylsulfonyl)pyrimidin-5-yl)carbamoyl)-6-(2-fluorophenyl)nicotinamide (1.70 g, 2.86 mmol, 87% yield) as light-yellow solid. 1H NMR (400 MHz, DMSO-d6) δ 11.56 (br s, 1H) 9.94 (br s, 1H) 8.64 (br s, 1H) 7.62 (s, 1H) 7.57 (br s, 1H) 7.40 (br s, 2H) 3.57-3.80 (m, 3H) 1.79 (br s, 2H) 1.22 (br s, 12H) 1.03 (br s, 4H). m/z (ESI, +ve ion): 596.0 (M+H)+.
Step 2. 6-Chloro-1-(4,6-diisopropyl-2-(propylsulfonyl)pyrimidin-5-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidine-2,4(1H,3H)-dioneTo a 150-mL round-bottomed flask was added 2,5-dichloro-N-((4,6-diisopropyl-2-(propylsulfonyl)pyrimidin-5-yl)carbamoyl)-6-(2-fluorophenyl)nicotinamide (1.48 g, 2.48 mmol) in tetrahydrofuran (12.41 mL). Then potassium bis(trimethylsilyl)amide, 1M solution in tetrahydrofuran (3.10 mL, 3.10 mmol) was added via an addition funnel dropwise to the reaction mixture over 5 min. The reaction mixture was allowed to stir under an inert (N2) atmosphere for 1 h. More KHMDS (0.5 eq; 2 mL) was added dropwise to the reaction mixture. The reaction mixture was quenched with sat. aq. NH4Cl (50 mL), then the mixture was diluted with 3:1 EtOAc/MeOH and brine solution. The layers were separated and the aqueous layer was extracted with EtOAc. The combined organic extracts were dried over MgSO4, filtered and concentrated in vacuo. This afforded 6-chloro-1-(4,6-diisopropyl-2-(propylsulfonyl)pyrimidin-5-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidine-2,4(1H,3H)-dione (1.34 g, 2.39 mmol, 97% yield) as light-yellow solid. 1H NMR (400 MHz, DMSO-d6) δ 8.60-8.64 (m, 1H) 7.48-7.54 (m, 1H) 7.23-7.33 (m, 3H) 7.15-7.21 (m, 1H) 3.61-3.67 (m, 2H) 3.13-3.19 (m, 2H) 1.66-1.74 (m, 2H) 1.21-1.23 (m, 3H) 1.13 (d, J=6.63 Hz, 6H) 0.96 (d, J=6.63 Hz, 6H). m/z (ESI, +ve ion): 560.0 (M+H)+.
Step 3. tert-Butyl (2R,5S)-4-(6-chloro-1-(4,6-diisopropyl-2-(propylsulfonyl)pyrimidin-5-yl)-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylateTo a 100-mL round-bottomed flask was added 6-chloro-1-(4,6-diisopropyl-2-(propylsulfonyl)pyrimidin-5-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidine-2,4(1H,3H)-dione (0.35 g, 0.62 mmol) and N,N′-diisopropylethylamine (0.14 mL, 0.81 mmol) in acetonitrile (3.12 mL). Then phosphorous oxychloride (0.07 mL, 0.75 mmol) was added slowly to the reaction mixture. The flask was fitted with a Findenser, then the mixture was stirred and heated at 80° C. while under an inert (N2) atmosphere for 45 min. Another aliquot of N,N′-diisopropylethylamine (0.14 mL, 0.81 mmol) and phosphorous oxychloride (0.07 mL, 0.75 mmol) was added to the reaction mixture, then allowed the mixture to stir an additional 10 min. The reaction mixture was removed from the heat bath and allowed to cool to ambient temperature.
The previous reaction mixture was cooled to 0° C. with a wet ice/water bath, while stirred. Then DIPEA (2 mL) was added slowly to the mixture. Then a mixture of (2R,5S)-1-Boc-2,5-dimethylpiperazine (0.33 g, 0.78 mmol) in MeCN (1 mL) was added slowly to the reaction mixture. The ice bath was removed and the overall mixture was allowed to slowly warm to ambient temperature over 10 min. The mixture was diluted with EtOAc and sat. aq. NH4Cl, then the layers were separated. The aqueous layer was extracted with EtOAc. The combined organic extracts were dried over MgSO4, filtered and concentrated in vacuo. The crude material was absorbed onto a plug of silica gel and purified by chromatography through a Interchim (25 micron) silica-gel column (40 grams), eluting with a gradient of 0-8% MeOH/DCM, to afford tert-butyl (2R,5S)-4-(6-chloro-1-(4,6-diisopropyl-2-(propylsulfonyl)pyrimidin-5-yl)-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.42 g, 0.55 mmol, 89% yield) as tan solid. m/z (ESI, +ve ion): 756.0 (M+H)+.
Step 4. 4-((2,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-1-(4,6-diisopropyl-2-(propylsulfonyl)pyrimidin-5-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-oneTo a 100-mL round-bottomed flask was added tert-butyl (2R,5S)-4-(6-chloro-1-(4,6-diisopropyl-2-(propylsulfonyl)pyrimidin-5-yl)-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.20 g, 0.26 mmol) and trifluoroacetic acid (0.19 mL, 2.64 mmol) in 1,2-dichloroethane (2.03 mL). The reaction mixture was stirred and heated at 60° C. for 2 h, while under an inert (N2) atmosphere. The reaction mixture was concentrated in vacuo. This material was carried directly into the next step of the synthesis, without further purification.
The previous residue was diluted with DCM (4 mL), then the reaction mixture was cooled to 0° C. with a wet ice bath. Then N,N′-diisopropylethylamine (0.55 mL, 3.17 mmol) was added to the reaction mixture and allowed the mixture to stir 2 min. Then acryloyl chloride (0.02 mL, 0.26 mmol) was added to the mixture dropwise. The mixture was diluted with DCM and sat. aq. NaHCO3, then the layers were separated. The aqueous layer was extracted with DCM. The combined organic extracts were dried over MgSO4, filtered and concentrated in vacuo. The crude material was absorbed onto a plug of silica gel and purified by chromatography through a Interchim (15 micron) silica-gel column (25 grams), eluting with a gradient of 0-100% EtOAc/heptane. This afforded 4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-1-(4,6-diisopropyl-2-(propylsulfonyl)pyrimidin-5-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-one (0.023 g, 0.032 mmol, 12.25% yield) as light-yellow solid. 1H NMR (400 MHz, DMSO-d4) δ 8.51 (d, J=7.46 Hz, 1H) 7.48-7.55 (m, 1H) 7.17-7.34 (m, 3H) 6.84 (ddd, J=19.95, 16.84, 10.47 Hz, 1H) 6.19 (br d, J=16.79 Hz, 1H) 5.73-5.79 (m, 1H) 4.76-4.98 (m, 2H) 4.14-4.34 (m, 2H) 3.80-3.94 (m, 2H) 3.60-3.66 (m, 2H) 2.79-2.96 (m, 2H) 1.71 (sxt, J=7.51 Hz, 2H) 1.33-1.40 (m, 3H) 1.18-1.29 (m, 3H) 1.10-1.14 (m, 6H) 0.90-1.00 (m, 9H). m/z (ESI, +ve ion): 710.0 (M+H)+.
Example 159 4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-1-(4,6-diisopropyl-2-vinylpyrimidin-5-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-oneTo a 100-mL round-bottomed flask was added 1-(2-bromo-4,6-diisopropylpyrimidin-5-yl)-6-chloro-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidine-2,4(1H,3H)-dione (Intermediate 231, 0.17 g, 0.31 mmol), sodium carbonate (0.10 g, 0.95 mmol) and vinylboronic acid pinacol ester (0.10 mL, 0.63 mmol) in 1,4-dioxane (2.32 mL)-water (0.55 mL) (4:1). The reaction mixture was deoxygenated by bubbling argong (gas) into the mixture for 5 min. Then (1,1′-bis(diphenylphosphino) ferrocene) dichloropalladium (0.02 g, 0.03 mmol) was added to the reaction mixture. The reaction mixture was stirred and heated at 90° C., while under an inert (N2) atmosphere for 16 h. The reaction mixture was allowed to cool to rt, then the mixture was diluted was EtOAc and sat. aq. NH4Cl. The layers were separated and the aqueous layer was extracted with EtOAc. The combined organic extracts were dried over MgSO4, filtered and concentrated in vacuo. The crude material was absorbed onto a plug of silica gel and purified by chromatography through a Interchim (25 micron) silica-gel column (25 grams). eluting with a gradient of 0-50% EtOAc/heptane, to afford 6-chloro-1-(4,6-diisopropyl-2-vinylpyrimidin-5-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidine-2,4(1H,3H)-dione (0.10 g, 0.21 mmol, 68.6% yield) as white solid. 1H NMR (400 MHz, DMSO-d6) δ 12.28 (s, 1H) 8.59 (s, 1H) 7.47-7.53 (m, 1H) 7.25-7.33 (m, 2H) 7.18 (td, J=7.36, 1.66 Hz, 1H) 6.80 (dd, J=17.21, 10.37 Hz, 1H) 6.57 (dd, J=17.21, 2.07 Hz, 1H) 5.72-5.78 (m, 1H) 2.90-3.01 (m, 2H) 1.10 (d, J=6.63 Hz, 6H) 0.94 (d, J=6.63 Hz, 6H). m/z (ESI, +ve ion): 480.0 (M+H)+.
Step 2. tert-Butyl (2R,5S)-4-(6-chloro-1-(4,6-diisopropyl-2-vinylpyrimidin-5-yl)-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylateTo a 100-mL round-bottomed flask was added 6-chloro-1-(4,6-diisopropyl-2-vinylpyrimidin-5-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidine-2,4(1H,3H)-dione (0.10 g, 0.20 mmol) and N,N-diisopropylethylamine (0.04 mL, 0.27 mmol) in acetonitrile (2.08 mL). Then phosphorous oxychloride (0.02 mL, 0.25 mmol) was added to the reaction mixture, then the mixture was heated and stirred at 80° C. for 30 min, while under an inert (N2) atmosphere. The reaction mixture was removed from the heat bath and allowed to cool to rt.
The reaction mixture was cooled to 0° C. with a wet ice/water bath. Then DIPEA (0.7 mL) was added dropwise to the reaction mixture. Then a solution of (2R,5S)-1-Boc-2,5-dimethylpiperazine (0.067 g, 0.313 mmol) in MeCN (1 mL) was added dropwise to the reaction mixture. The ice bath was removed and the mixture was allowed to warm to rt. More DIPEA (0.7 mL) and (2R,5S)-1-Boc-2,5-dimethylpiperazine (0.067 g, 0.313 mmol) was added to the reaction mixture and stirred an additional 10 min. The reaction mixture was diluted with EtOAc and sat. aq. NH4Cl. The aqueous layer was extracted with EtOAc. The combined organic extracts were dried over MgSO4, filtered and concentrated in vacuo. The crude material was absorbed onto a plug of silica gel and purified by chromatography through a Interchim (25 micron) silica-gel column (25 grams), eluting with a gradient of 0-50% EtOAc in CH2CL2, to provide tert-butyl (2R,5S)-4-(6-chloro-1-(4,6-diisopropyl-2-vinylpyrimidin-5-yl)-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.132 g, 0.195 mmol, 94% yield) as light-yellow solid. m/z (ESI, +ve ion): 676.2 (M+H)+.
Step 3. 4-((2,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-1-(4,6-diisopropyl-2-vinylpyrimidin-5-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-oneTo a 100-mL round-bottomed flask was added tert-butyl (2R,5S)-4-(6-chloro-1-(4,6-diisopropyl-2-vinylpyrimidin-5-yl)-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.13 g, 0.19 mmol) and trifluoroacetic acid (0.14 mL, 1.92 mmol) in 1,2-dichloroethane (1.92 mL). The reaction mixture was stirred and heated at 60° C. for 2 h, while under an inert (N2) atmosphere. The reaction mixture was concentrated n vacuo. This material was carried directly into the next step of the synthesis, without further purification.
The previous residue was diluted with DCM (4 mL). then the reaction mixture was cooled to 0° C. with a wet ice bath. Then N,N′-diisopropylethylamine (0.40 mL, 2.30 mmol) was added to the reaction mixture and allowed the mixture to stir 2 min. Then acryloyl chloride (0.01 mL, 0.19 mmol) was added to the mixture dropwise. The mixture was diluted with DCM and sat. aq. NaHCO3, then the layers were separated. The aqueous layer was extracted with DCM. The combined organic extracts were dried over MgSO4, filtered and concentrated in vacuo. The crude material was absorbed onto a plug of silica gel and purified by chromatography through a Interchim (15 micron) silica-gel column (25 grams), eluting with a gradient of 0-100% EtOAc/DCM. This afforded 4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-1-(4,6-diisopropyl-2-vinylpyrimidin-5-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-one (0.082 g, 0.130 mmol, 67.7% yield) as white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.50 (d, J=4.77 Hz, 1H) 7.49-7.55 (m, 1H) 7.19-7.35 (m, 3H) 6.76-6.90 (m, 2H) 6.56 (dd, J=17.31, 1.97 Hz, 1H) 6.20 (dd, J=16.69, 1.97 Hz, 1H) 5.72-5.79 (m, 2H) 4.73-4.99 (m, 2H) 4.21 (q, J=14.31 Hz, 1H) 3.81-3.95 (m, 2H) 2.64-2.78 (m, 2H) 1.36 (t, J=5.60 Hz, 3H) 1.27 (br d, J=6.63 Hz, 2H) 1.20 (d, J=6.84 Hz, 2H) 1.10 (dd, J=6.63, 3.11 Hz, 6H) 0.95 (br d, J=6.63 Hz, 6H). m/z (ESI, +ve ion): 630.2 (M+H)+.
Example 160 4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-1-(2-((dimethylamino)methyl)-4,6-diisopropylpyrimidin-5-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-oneTo a 50-mL round-bottomed flask was added tert-butyl (2R,5S)-4-(3-chloro-2-(2-fluorophenyl)-8-(2-formyl-4,6-diisopropylpyrimidin-5-yl)-7-oxo-7,8-dihydro-1,6-naphthyridin-5-yl)-2,5-dimethylpiperazine-1-carboxylate (Intermediate 235, 0.16 g, 0.24 mmol) and dimethylamine (2.0M in THF) (0.18 mL, 0.36 mmol) in tetrahydrofuran (2.43 mL). Then glacial acetic acid (1.2 μL, 0.024 mmol), followed by sodium cyanoborohydride (0.03 mL, 0.73 mmol) was added to the reaction mixture. The overall reaction mixture was allowed to stir at rt, while under an inert (N2) atmosphere for 30 min. The reaction mixture was quenched with MeOH (0.5 mL), then allowed the mixture to stir 5 min. Then the mixture was diluted with EtOAc and sat. aq. NaHCO3. The layers were separated and the aqueous layer was extracted with EtOAc. The combined organic extracts were dried over MgSO4, filtered and concentrated in vacuo. The crude material (0.195 grams) was carried into the next step of the synthesis, without further purification. m/z (ESI, +ve ion): 707.2 (M+H)+.
Step 2. 4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-1-(2-((dimethylamino)methyl)-4,6-diisopropylpyrimidin-5-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-oneTo a 100-mL round-bottomed flask was added tert-butyl (2R,5S)-4-(6-chloro-1-(2-((dimethylamino)methyl)-4,6-diisopropylpyrimidin-5-yl)-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.17 g, 0.24 mmol) and trifluoroacetic acid (0.17 mL, 2.40 mmol) in 1,2-dichloroethane (2.40 mL). The reaction mixture was stirred and heated at 60° C. for 20 min, while under an inert (N2) atmosphere. The reaction mixture was concentrated in vacuo. This material was carried directly into the next step of the synthesis, without further purification.
The previous residue was diluted with DCM (4 mL), then the reaction mixture was cooled to 0° C. with a wet ice bath. Then N,N′-diisopropylethylamine (0.50 mL, 2.88 mmol) was added to the reaction mixture and allowed the mixture to stir 2 min. Then acryloyl chloride (1.1M in THF) (0.21 mL, 0.24 mmol) was added to the reaction mixture. The mixture was diluted with DCM and sat. aq. NaHCO3, then the layers were separated. The aqueous layer was extracted with DCM. The combined organic extracts were dried over MgSO4, filtered and concentrated in vacuo. The crude material was absorbed onto a plug of silica gel and purified by chromatography through a Interchim (15 micron) silica-gel column (40 grams), eluting with a gradient of 0-25% 2M NH3 in MeOH/DCM. This afforded 4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-1-(2-((dimethylamino)methyl)-4,6-diisopropylpyrimidin-5-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-one (0.083 g, 0.126 mmol, 52.2% yield) as white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.49 (d, J=4.98 Hz, 1H) 7.52 (q, J=7.12 Hz, 1H) 7.18-7.34 (m, 3H) 6.84 (td, J=17.41, 10.37 Hz, 1H) 6.20 (br d, J=17.62 Hz, 1H) 5.76 (br d, J=10.37 Hz, 1H) 4.76-4.97 (m, 2H) 4.46-4.58 (m, 1H) 4.04-4.28 (m, 2H) 3.98 (br s, 2H) 3.69-3.95 (m, 2H) 3.15-3.21 (m, 2H) 2.66-2.80 (m, 2H) 1.35 (br t, J=5.39 Hz, 3H) 1.15-1.29 (m, 6H) 1.09 (dd, J=6.53, 2.80 Hz, 6H) 0.95 (br d, J=6.22 Hz, 6H). m/z (ESI, +ve ion): 661.1 (M+H)+.
Example 161 1-[2-(Azetidin-1-ylmethyl)-4,6-diisopropyl-pyrimidin-5-yl]-6-chloro-4-[(2S,5R)-2,5-dimethyl-4-prop-2-enoyl-piperazin-1-yl]-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2-oneTo a 50-mL round-bottomed flask was added tert-butyl (2R,5S)-4-(3-chloro-2-(2-fluorophenyl)-8-(2-formyl-4,6-diisopropylpyrimidin-5-yl)-7-oxo-7,8-dihydro-1,6-naphthyridin-5-yl)-2,5-dimethylpiperazine-1-carboxylate (Intermediate 235, 0.200 g, 0.295 mmol) and azetidine (0.02 mL, 0.443 mmol) in tetrahydrofuran (2.95 mL). Then glacial acetic acid (1.7 μl, 0.03 mmol), followed by sodium cyanoborohydride (0.056 g, 0.886 mmol) was added to the reaction mixture. The overall reaction mixture was allowed to stir at it, while under an inert (N2) atmosphere for 30 min. The reaction mixture was quenched with MeOH (0.5 mL) and allowed the mixture to stir 5 min. Then the mixture was diluted with EtOAc and sat. aq. NaHCO3. The layers were separated and the aqueous layer was extracted with EtOAc. The combined organic extracts were dried over MgSO4, filtered and concentrated in vacuo. The crude material (0.212 grams) was carried into the next step of the synthesis, without further purification. m/z (ESI, +ve ion): 719.3 (M+H)+.
Step 2. 4-((2,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-1-(2-(azetidin-1-ylmethyl)-4,6-diisopropylpyrimidin-5-yl)-6-chloro-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-oneTo a 100-mL round-bottomed flask was added tert-butyl (2R,5S)-4-(1-(2-(azetidin-1-ylmethyl)-4,6-diisopropylpyrimidin-5-yl)-6-chloro-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.18 g, 0.25 mmol) and trifluoroacetic acid (0.18 mL, 2.5 mmol) in 1,2-dichloroethane (2.4 mL). The reaction mixture was stirred and heated at 60° C. for 20 min, while under an inert (N2) atmosphere. The reaction mixture was concentrated in vacuo. This material was carried directly into the next step of the synthesis, without further purification.
The previous residue was diluted with DCM (4 mL), then the reaction mixture was cooled to 0° C. with a wet ice bath. Then N,N′-diisopropylethylamine (0.5 mL, 3.0 mmol) was added to the reaction mixture and allowed the mixture to stir 2 min. Then acryloyl chloride (1.1M in THF) (0.2 mL, 0.25 mmol) was added to the mixture dropwise. The reaction mixture was diluted with DCM and sat aq. NaHCO3, then the layers were separated. The aqueous layer was extracted with DCM. The combined organic extracts were dried over MgSO4, filtered and concentrated in vacuo. The crude material was absorbed onto a plug of silica gel and purified by chromatography through a Interchim (15 micron) silica-gel column (40 grams), eluting with a gradient of 0-25% 2M NH3-MeOH/DCM, This afforded 4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-1-(2-(azetidin-1-ylmethyl)-4,6-diisopropylpyrimidin-5-yl)-6-chloro-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-one (0.008 g, 0.012 mmol, 4.75% yield) as white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.49 (d, J=4.77 Hz, 1H) 7.49-7.61 (m, 1H) 7.32 (s, 1H) 7.26-7.30 (m, 1H) 7.21 (br d, J=7.67 Hz, 1H) 6.74-6.94 (m, 1H) 6.16-6.23 (m, 1H) 5.67-5.81 (m, 1H) 4.76-4.94 (m, 1H) 4.41-4.55 (m, 1H) 4.12-4.28 (m, 1H) 3.87 (br s, 2H) 3.62-3.74 (m, 2H) 3.45-3.55 (m, 1H) 2.68 (br s, 4H) 2.32-2.48 (m, 1H) 1.79-2.05 (m, 2H) 1.35 (br t, J=5.80 Hz, 2H) 1.26 (br d, J=7.26 Hz, 1H) 1.19 (br d, J=7.46 Hz, 2H) 1.02-1.13 (m, 6H) 0.99 (s, 1H) 0.93 (br dd, J=6.43, 3.32 Hz, 7H). m/z (ESI, +ve ion): 673.3 (M+H)+.
Example 162 6-Chloro-1-[4,6-diisopropyl-2-(morpholinomethyl)pyrimidin-5-yl]-4-[(2S,5R)-2,5-dimethyl-4-prop-2-enoyl-piperazin-1-yl]-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2-oneTo a 50-mL round-bottomed flask was added tert-butyl (2R,5S)-4-(3-chloro-2-(2-fluorophenyl)-8-(2-formyl-4,6-diisopropylpyrimidin-5-yl)-7-oxo-7,8-dihydro-1,6-naphthyridin-5-yl)-2,5-dimethylpiperazine-1-carboxylate (Intermediate 235, 0.21 g, 0.29 mmol) and morpholine (0.03 mL, 0.44 mmol) in tetrahydrofuran (2.95 mL). Then glacial acetic acid (1.7 μl, 0.03 mmol), followed by sodium cyanoborohydride (0.056 g, 0.88 mmol) was added to the reaction mixture. The overall reaction mixture was allowed to stir at it, while under an inert (N2) atmosphere for 30 min. The reaction mixture was quenched with MeOH (0.5 mL) and allowed the mixture to stir 5 min. Then the mixture was diluted with EtOAc and sat. aq. NaHCO3. The layers were separated and the aqueous layer was extracted with EtOAc. The combined organic extracts were dried over MgSO4, filtered and concentrated in vacuo. The crude material (0.263 grams) was carried into the next step of the synthesis, without further purification. m/z (ESI, +ve ion): 749.3 (M+H)+.
Step 2. 4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-1-(4,6-diisopropyl-2-(morpholinomethyl)pyrimidin-5-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-oneTo a 100-mL round-bottomed flask was added tert-butyl (2R,5S)-4-(6-chloro-1-(4,6-diisopropyl-2-(morpholinomethyl)pyrimidin-5-yl)-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.220 g, 0.294 mmol) and trifluoroacetic acid (0.2 mL, 2.94 mmol) in 1,2-dichloroethane (2.4 mL). The reaction mixture was stirred and heated at 60° C. for 20 min, while under an inert (N2) atmosphere. The reaction mixture was concentrated in vacuo. This material was carried directly into the next step of the synthesis, without further purification.
The previous residue was diluted with DCM (4 mL), then the reaction mixture was cooled to 0° C. with a wet ice bath. Then N,N′-diisopropylethylamine (0.61 mL, 3.52 mmol) was added to the reaction mixture and allowed the mixture to stir 2 min. Then acryloyl chloride (1.1M in THF) (0.26 mL, 0.294 mmol) was added to the mixture dropwise. The mixture was diluted with DCM and sat. aq. NaHCO3, then the layers were separated. The aqueous layer was extracted with DCM. The combined organic extracts were dried over MgSO4, filtered and concentrated in vacuo. The crude material was absorbed onto a plug of silica gel and purified by chromatography through a Interchim (15 micron) silica-gel column (40 grams), eluting with a gradient of 0-25% 2M NH3-MeOH/DCM. This afforded 4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-1-(4,6-diisopropyl-2-(morpholinomethyl)pyrimidin-5-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-one (0.085 g, 0.121 mmol, 41.2% yield) as white solid. 1H NMR (500 MHz, DMSO-d6) δ 8.48 (d, J=6.62 Hz, 1H) 7.52 (q, J=7.14 Hz, 1H) 7.24-7.34 (m, 2H) 7.16-7.21 (m, 1H) 6.79-6.90 (m, 1H) 6.16-6.22 (m, 1H) 5.73-5.78 (m, 1H) 4.83-4.93 (m, 1H) 4.14-4.26 (m, 1H) 3.86-3.94 (m, 1H) 3.74 (s, 2H) 3.54-3.59 (m, 4H) 3.17 (d, J=5.32 Hz, 2H) 2.61-2.75 (m, 2H) 2.52-2.60 (m, 4H) 1.31-1.37 (m, 3H) 1.21-1.28 (m, 2H) 1.18 (d, J=6.75 Hz, 2H) 1.03-1.11 (m, 6H) 0.92 (br d, J=6.49 Hz, 6H). m/z (ESI, +ve ion): 703.1 (M+H)+.
Example 163 6-Chloro-1-[4,6-diisopropyl-2-(pyrrolidin-1-ylmethyl)pyrimidin-5-yl]-4-[(2S,5R)-2,5-dimethyl-4-prop-2-enoyl-piperazin-1-yl]-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2-oneTo a 50-mL round-bottomed flask was added tert-butyl (2R,5S)-4-(3-chloro-2-(2-fluorophenyl)-8-(2-formyl-4,6-diisopropylpyrimidin-5-yl)-7-oxo-7,8-dihydro-1,6-naphthyridin-5-yl)-2,5-dimethylpiperazine-1-carboxylate (Intermediate 235, 0.200 g, 0.295 mmol) and pyrrolidine (0.03 mL, 0.443 mmol) in tetrahydrofuran (2.95 mL). Then glacial acetic acid (1.7 μl, 0.030 mmol), followed by sodium cyanoborohydride (0.056 g, 0.886 mmol) was added to the reaction mixture. The overall reaction mixture was allowed to stir at t, while under an inert (N2) atmosphere for 30 min. The reaction mixture was quenched with MeOH (0.5 mL) and allowed the mixture to stir 5 min. Then the mixture was diluted with EtOAc and sat. aq. NaHCO3. The layers were separated and the aqueous layer was extracted with EtOAc. The combined organic extracts were dried over MgSO4, filtered and concentrated in vacuo. The crude material (0.238 grams) was carried into the next step of the synthesis, without further purification. m/z (ESI, +ve ion): 733.3 (M+H)+.
Step 2. 4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-1-(4,6-diisopropyl-2-(pyrrolidin-1-ylmethyl)pyrimidin-5-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-oneTo a 100-mL round-bottomed flask was added tert-butyl (2R,5S)-4-(6-chloro-1-(4,6-diisopropyl-2-(pyrrolidin-1-ylmethyl)pyrimidin-5-yl)-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.190 g, 0.259 mmol) and trifluoroacetic acid (0.19 mL, 2.59 mmol) in 1,2-dichloroethane (2.40 mL). The reaction mixture was stirred and heated at 60° C. for 20 min, while under an inert (N2) atmosphere. The reaction mixture was concentrated in vacuo. This material was carried directly into the next step of the synthesis, without further purification.
The previous residue was diluted with DCM (4 mL), then the reaction mixture was cooled to 0° C. with a wet ice bath. Then N,N′-diisopropylethylamine (0.54 mL, 3.11 mmol) was added to the reaction mixture and stirred 2 min. Then acryloyl chloride (1.1M in THF) (0.23 mL, 0.259 mmol) was added to the mixture dropwise. The mixture was diluted with DCM and sat. aq. NaHCO3, then the layers were separated. The aqueous layer was extracted with DCM. The combined organic extracts were dried over MgSO4, filtered and concentrated in vacuo. The crude material was absorbed onto a plug of silica gel and purified by chromatography through a Interchim (15 micron) silica-gel column (40 grams), eluting with a gradient of 0-25% 2M NH3-MeOH/DCM. This afforded 4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-1-(4,6-diisopropyl-2-(pyrrolidin-1-ylmethyl)pyrimidin-5-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-one (0.060 g, 0.087 mmol, 33.7% yield) as light-yellow solid. 1H NMR (500 MHz, DMSO-d6) δ 8.48 (d, J=6.49 Hz, 1H) 7.44-7.55 (m, 1H) 7.24-7.34 (m, 2H) 7.18 (td. J=7.46, 1.69 Hz, 1H) 6.79-6.89 (m, 1H) 6.19 (dt, J=16.64, 2.12 Hz, 1H) 5.76 (ddd, J=10.35, 6.07, 2.27 Hz, 1H) 4.83-4.93 (m, 1H) 4.78 (br s, 1H) 4.10-4.25 (m, 1H) 3.78-3.91 (m, 4H) 2.59-2.74 (m, 6H) 1.61-1.69 (m, 4H) 1.30-1.38 (m, 3H) 1.21-1.29 (m, 2H) 1.18 (d, J=6.75 Hz, 2H) 1.02-1.11 (m, 6H) 0.89-0.96 (m, 6H). m/z (ESI, +ve ion): 687.4 (M+H)+.
Example 164-1 (Peak 1) 6-Chloro-1-(6-cyclopropyl-2-isopropyl-4-methyl-3-pyridyl)-4-[(2S,5R)-2,5-dimethyl-4-prop-2-enoyl-piperazin-1-yl]-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2-oneTo a 50-mL round-bottomed flask was added tert-butyl (2R,5S)-4-(1-(6-bromo-2-isopropyl-4-methylpyridin-3-yl)-6-chloro-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.275 g, 0.393 mmol, Intermediate 202) in tetrahydrofuran (2.86 mL). The reaction mixture was degassed by bubbling argon (gas) into the mixture for 5 min. Then cyclopropylzinc bromide (0.5M in THF) (1.37 mL, 0.687 mmol) and xantphos pd g3 (0.011 g, 0.012 mmol) was added to the reaction mixture. The overall reaction mixture was allowed to stir under an inert (N2) atmosphere at rt for 30 min. The reaction mixture was quenched with sat. aq. NH4Cl and the mixture was diluted with EtOAc. The layers were separated and the aqueous layer was extracted with EtOAc. The combined organic extracts were dried over MgSO4, filtered and concentrated in vacuo. The crude material was absorbed onto a plug of silica gel and purified by chromatography through a Interchim (25 micron) silica-gel column (25 grams), eluting with a gradient of 0-40% EtOAc in CH2CL2, to provide tert-butyl (2R,5S)-4-(6-chloro-1-(6-cyclopropyl-2-isopropyl-4-methylpyridin-3-yl)-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.235 g, 0.355 mmol, 90% yield) as tan solid. 1H NMR (400 MHz, DMSO-d6) δ 8.42 (d, J=6.22 Hz, 1H) 7.48-7.56 (m, 1H) 7.20-7.35 (m, 3H) 7.04 (d, J=5.80 Hz, 1H) 4.81 (br s, 1H) 4.36 (br s, 1H) 4.00-4.16 (m, 1H) 3.85 (br s, 1H) 3.69 (br d, J=13.48 Hz, 1H) 3.43-3.59 (m, 1H) 2.54-2.64 (m, 1H) 1.99-2.05 (m, 1H) 1.87 (d, J=12.44 Hz, 3H) 1.44 (s, 9H) 1.30-1.38 (m, 3H) 1.11-1.20 (m, 4H) 0.86-1.02 (m, 9H). m/z (ESI, +ve ion): 661.2 (M+H)+.
Step 2. 4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-1-(6-cyclopropyl-2-isopropyl-4-methylpyridin-3-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-oneTo a 100-mL round-bottomed flask was added tert-butyl (2R,5S)-4-(6-chloro-1-(6-cyclopropyl-2-isopropyl-4-methylpyridin-3-yl)-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.230 g, 0.348 mmol) and trifluoroacetic acid (0.25 mL, 3.48 mmol) in 1,2-dichloroethane (3.48 mL). The reaction mixture was stirred and heated at 60° C. for 30 min, while under an inert (N2) atmosphere. The reaction mixture was concentrated in vacuo. This material was carried directly into the next step of the synthesis, without further purification.
The previous residue was diluted with 1,2-dichloroethane (3.48 mL), then the reaction mixture was cooled to 0° C. with a wet ice bath. Then n,n′-diisopropylethylamine (0.72 mL, 4.17 mmol) was added to the reaction mixture and stirred 2 min. Then acryloyl chloride (0.31 mL, 0.348 mmol) was added to the mixture dropwise and stirred under an inert (N2) atmosphere for 10 min. The mixture was diluted with EtOAc and sat. aq. NaHCO3, then the layers were separated. The aqueous layer was extracted with EtOAc, then the combined organic extracts were dried over MgSO4, filtered and concentrated in vacuo. The crude material was absorbed onto a plug of silica gel and purified by chromatography through a Interchim (15 micron) silica-gel column (40 grams), eluting with a gradient of 0-5% MeOH/DCM. The racemic mixture of atropisomers were separated by SFC; (Column: IC, 5 μm, 21×250 mm, F=80 mL/min, 40% MeOH/60% Carbon dioxide) This afforded Peak 1: 4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-1-(6-cyclopropyl-2-isopropyl-4-methylpyridin-3-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-one (0.060 g, 0.098 mmol, 28.0% yield) as off-white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.44 (d, J=3.11 Hz. 1H) 7.49-7.56 (m, 1H) 7.21-7.35 (m, 3H) 7.04 (s, 1H) 6.83 (td, J=16.90, 10.57 Hz, 1H) 6.19 (dd, J=16.59, 2.07 Hz, 1H) 5.72-5.78 (m, 1H) 4.84 (br s, 1H) 4.77 (br s, 1H) 4.10-4.20 (m, 1H) 3.79-3.92 (m, 2H) 3.45-3.53 (m, 1H) 2.55-2.65 (m, 1H) 1.90-2.05 (m, 1H) 1.87 (s, 3H) 1.29-1.36 (m, 3H) 1.24 (br d, J=6.63 Hz, 1H) 1.17 (d, J=6.63 Hz, 2H) 0.98-1.03 (m, 3H) 0.91 (br d, J=6.63 Hz, 7H). m/z (ESI, +ve ion): 615.2 (M+H)+.
Example 164-2 (Peak 2)The racemic mixture of atropisomers were separated by SFC; (Column: IC, 5 μm, 21×250 mm, F=80 mL/min, 40% MeOH/60% Carbon dioxide) This afforded Peak 2: 4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-1-(6-cyclopropyl-2-isopropyl-4-methylpyridin-3-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-one (0.055 g, 0.089 mmol, 25.7% yield) as off-white solid.
Example 165-1 (Peak 1) 4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-7-(2-fluorophenyl)-1-(2-isopropyl-4,6-dimethylpyridin-3-yl)pyrido[2,3-d]pyrimidin-2(1H)-oneTo a 50-mL round-bottomed flask was added tert-butyl (2R,5S)-4-(1-(6-bromo-2-isopropyl-4-methylpyridin-3-yl)-6-chloro-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.250 g, 0.357 mmol, Intermediate 202) and sodium carbonate (0.114 g, 1.071 mmol) in 1,4-dioxane (1.0 mL). The reaction mixture was degassed by bubbling argon (gas) into the mixture for 5 min. Then xantphos pd g3 (0.034 g, 0.036 mmol), water (0.2 mL) and methylboronic acid (1.069 g, 17.86 mmol) was added to the reaction mixture. The overall reaction mixture was stirred and heated at 100° C. for 2 h. The reaction mixture was cooled to rt, then the mixture was diluted with sat. aq. NaHCO3 and EtOAc. The layers were separated and the aqueous layer was extracted with EtOAc. The combined organic extracts were dried over MgSO4, filtered and concentrated in vacuo. The crude material was absorbed onto a plug of silica gel and purified by chromatography through a Interchim (25 micron) silica-gel column (25 grams), eluting with a gradient of 0-100% EtOAc in CH2CL2, to provide tert-butyl (2R,5S)-4-(6-chloro-7-(2-fluorophenyl)-1-(2-isopropyl-4,6-dimethylpyridin-3-yl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.100 g, 0.157 mmol, 44.1% yield) as light-yellow solid. m/z (ESI, +ve ion): 635.2 (M+H)+.
Step 2. 4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-1-chloro-7-(2-fluorophenyl)-1-(2-isopropyl-4,6-dimethylpyridin-3-yl)pyrido[2,3-d]pyrimidin-2(1H)-oneTo a 100-mL round-bottomed flask was added tert-butyl (2R,5S)-4-(6-chloro-7-(2-fluorophenyl)-1-(2-isopropyl-4,6-dimethylpyridin-3-yl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.100 g, 0.157 mmol) and trifluoroacetic acid (0.1 mL, 1.574 mmol) in 1,2-dichloroethane (1.5 mL). The reaction mixture was stirred and heated at 60° C. for 30 min, while under an inert (N2) atmosphere. The reaction mixture was concentrated in vacuo. This material was carried directly into the next step of the synthesis, without further purification.
The previous residue was diluted with 1,2-dichlormethane (1.5 mL), then cooled the reaction mixture to 0° C. with a wet ice bath. Then n,n′-diisopropylethylamine (0.3 mL, 1.889 mmol) was added to the reaction mixture and stirred 2 min. Then acryloyl chloride (0.14 mL, 0.157 mmol) was added to the mixture dropwise and stirred under an inert (N2) atmosphere for 10 min. The mixture was diluted with EtOAc and sat. aq. NaHCO3, then the layers were separated. The aqueous layer was extracted with EtOAc, then the combined organic extracts were dried over MgSO4, filtered and concentrated in vacuo. The crude material was absorbed onto a plug of silica gel and purified by chromatography through a Interchim (15 micron) silica-gel column (40 grams), eluting with a gradient of 0-5% MeOH/DCM. The racemic mixture was separated by SFC; (Column, IA, 5 μm, 21×250 mm, F=80 mL/min, 15% Isopropanol/85% Carbon dioxide) This afforded the separated Atropisomers, as Peak 1 (M) 4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-7-(2-fluorophenyl)-1-(2-isopropyl-4,6-dimethylpyridin-3-yl)pyrido[2,3-d]pyrimidin-2(1H)-one (0.030 g, 0.051 mmol, 32.3% yield) as white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.38 (d, J=3.11 Hz, 1H) 7.42-7.48 (m, 1H) 7.14-7.27 (m, 3H) 6.96 (s, 1H) 6.76 (td, J=16.79, 10.37 Hz, 1H) 6.12 (dd, J=16.69, 1.76 Hz, 1H) 5.65-5.71 (m, 1H) 4.78 (br s, 1H) 4.70 (br s, 1H) 4.03-4.14 (m, 1H) 3.73-3.87 (m, 2H) 2.55-2.62 (m, 1H) 2.32-2.38 (m, 3H) 1.81 (s, 3H) 1.26 (t, J=6.63 Hz, 3H) 1.18 (br d, J=6.63 Hz, 2H) 1.11 (br d, J=6.84 Hz, 2H) 0.98 (d, J=6.63 Hz, 3H) 0.88 (d, J=6.63 Hz, 3H). m/z (ESI, +ve ion): 589.1 (M+H)+.
Example 165-2 (Peak 2)The racemic mixture was separated by SFC; (Column, IA, 5 μm, 21×250 mm, F=80 mL/min, 15% Isopropanol/85% Carbon dioxide) This afforded Peak 2 (P) 4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-7-(2-fluorophenyl)-1-(2-isopropyl-4,6-dimethylpyridin-3-yl)pyrido[2,3-d]pyrimidin-2(1H)-one (0.035 g, 0.059 mmol, 37.7% yield) as white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.47 (s, 1H) 7.48-7.56 (m, 1H) 7.22-7.34 (m, 3H) 7.04 (s, 1H) 6.83 (ddd, J=16.59, 13.89, 10.57 Hz, 1H) 6.19 (dd, J=16.69, 2.18 Hz, 1H) 5.71-5.78 (m, 1H) 4.86 (br s, 1H) 4.76 (br s, 1H) 4.08-4.20 (m, 1H) 3.79-3.96 (m, 2H) 2.61-2.70 (m, 1H) 2.39-2.45 (m, 3H) 1.91 (s, 3H) 1.33 (br t, J=6.32 Hz, 3H) 1.23 (br d, J=6.43 Hz, 2H) 1.16 (br d, J=6.84 Hz, 2H) 1.04 (d, J=6.63 Hz, 3H) 0.92 (d, J=6.63 Hz, 3H). m/z (ESI, +ve ion): 589.1 (M+H)+.
Example 166-1 (Peak 1) 6-Chloro-4-[(2S,5R)-2,5-dimethyl-4-prop-2-enoyl-piperazin-1-yl]-1-(6-ethyl-2-isopropyl-4-methyl-3-pyridyl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2-oneTo a 100-mL round-bottomed flask was added tert-butyl (2R,5S)-4-(1-(6-bromo-2-isopropyl-4-methylpyridin-3-yl)-6-chloro-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.230 g, 0.329 mmol, Intermediate 202) in tetrahydrofuran (1.6 mL). The reaction mixture was degassed by bubbling argon (gas) into the mixture for 5 min. Then triethylaluminum (LOM in THF) (0.8 mL, 0.821 mmol) and tetrakis (0.038 g, 0.033 mmol) was added to the reaction mixture. The mixture was stirred and heated at 60° C. for 16 h, while under an inert (N2) atmosphere. The reaction was quench with sat. aq. NaHCO3 and diluted with mixture with EtOAc and brine. The layers were separated and the aqueous layer was extracted with EtOAc. The combined organic extracts were dried over MgSO4, filtered and concentrated in vacuo. The crude material (0.250 g) was carried into the next step of the synthesis, without further purification. m/z (ESI, +ve ion): 649.3 (M+H)+.
Step 2. 4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-1-(6-ethyl-2-isopropyl-4-methylpyridin-3-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-oneTo a 100-mL round-bottomed flask was added tert-butyl (2R,5S)-4-(6-chloro-1-(6-ethyl-2-isopropyl-4-methylpyridin-3-yl)-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.213 g, 0.328 mmol) and trifluoroacetic acid (0.2 mL, 3.28 mmol) in 1,2-dichloroethane (1.5 mL). The reaction mixture was stirred and heated at 60° C. for 30 min, while under an inert (N2) atmosphere. The reaction mixture was concentrated in vacuo. This material was carried directly into the next step of the synthesis, without further purification.
The previous residue was diluted with 1,2-dichloroethane (1.5 mL), then the reaction mixture was cooled to 0° C. with a wet ice bath. Then n,n′-diisopropylethylamine (0.6 mL, 3.94 mmol) was added to the reaction mixture and stirred 2 min. Then acryloyl chloride (0.29 mL, 0.328 mmol) was added to the mixture dropwise and stirred under an inert (N2) atmosphere for 10 min. The mixture was diluted with EtOAc and sat. aq. NaHCO3. then the layers were separated. The aqueous layer was extracted with EtOAc, then the combined organic extracts were dried over MgSO4, filtered and concentrated in vacuo. The crude material was absorbed onto a plug of silica gel and purified by chromatography through an Interchim (15 micron) silica-gel column (40 grams), eluting with a gradient of 0-5% MeOH/DCM. The racemates were separated by SFC; (Column, IA, 5 μm, 21×250 mm, F=80 mL/min, 15% MeOH/85: Carbon dioxide). This afforded the separated Atropisomers as Peak 1: 4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-1-(6-ethyl-2-isopropyl-4-methylpyridin-3-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-one (0.040 g, 0.066 mmol, 20.21% yield) as off-white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.46 (d, J=2.90 Hz, 1H) 7.47-7.57 (m, 1H) 7.20-7.35 (m, 3H) 7.05 (s, 1H) 6.78-6.90 (m, 1H) 6.20 (dd, J=16.59, 1.87 Hz, 1H) 5.72-5.79 (m, 1H) 4.86 (br s, 1H) 4.77 (br s, 1H) 4.10-4.22 (m, 1H) 3.80-3.95 (m, 2H) 3.50 (br d, J=10.37 Hz, 1H) 2.55-2.75 (m, 3H) 1.90 (s, 3H) 1.34 (br t, J=6.74 Hz, 3H) 1.16-1.29 (m, 6H) 1.06 (d, J=6.63 Hz, 3H) 0.97 (d, J=6.63 Hz, 3H). m/z (ESI, +ve ion): 603.2 (M+H)+.
Example 166-2 (Peak 2)The racemates were separated by SFC; (Column, IA, 5 μm, 21×250 mm, F=80 mL/min, 15% MeOH/85: Carbon dioxide). This afforded the separated Atropisomers as Peak 2: 4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-1-(6-ethyl-2-isopropyl-4-methylpyridin-3-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-one (0.030 g, 0.050 mmol, 15.16% yield) as off-white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.48 (s, 1H) 7.49-7.56 (m, 1H) 7.22-7.35 (m, 3H) 7.06 (s, 1H) 6.78-6.89 (m, 1H) 6.20 (dd, J=16.59, 2.07 Hz, 1H) 5.73-5.79 (m, 1H) 4.87 (br s, 1H) 4.76 (br s, 1H) 4.14 (br d, J=13.06 Hz, 1H) 3.81-3.96 (m, 2H) 3.40-3.53 (m, 1H) 2.62-2.74 (m, 3H) 1.89-1.97 (m, 3H) 1.34 (br t, J=6.22 Hz, 3H) 1.16-1.27 (m, 6H) 1.05 (d, J=6.84 Hz, 3H) 0.94 (d, J=6.63 Hz, 3H). m/z (ESI, +ve ion): 603.2 (M+H)+.
Example 167 6-Chloro-1-(4,6-diisopropyl-2-methyl-pyrimidin-5-yl)-4-[(2S,5R)-2,5-dimethyl-4-prop-2-enoyl-piperazin-1-yl]-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2-oneTo a 100-mL round-bottomed flask was added tert-butyl (2R,5S)-4-(1-(2-bromo-4,6-diisopropylpyrimidin-5-yl)-6-chloro-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.300 g, 0.411 mmol, Intermediate 232) and sodium carbonate (0.131 g, 1.234 mmol) in 1,4-dioxane (1.6 mL). The reaction mixture was degassed by bubbling argon (gas) into the mixture for 5 min. Then xantphos pd g3 (0.020 g, 0.021 mmol), water (0.4 mL) and methylboronic acid (1.2 mL, 20.57 mmol) was added into the reaction mixture. The overall reaction mixture was stirred and heated at 80° C. for 8 h. The reaction mixture was cooled to rt, then the mixture was diluted with sat. aq. NaHCO3 and EtOAc. The layers were separated and the aqueous layer was extracted with EtOAc. The combined organic extracts were dried over MgSO4, filtered and concentrated in vacuo. The crude material was absorbed onto a plug of silica gel and purified by chromatography through a Interchim (25 micron) silica-gel column (25 grams), eluting with a gradient of 0-50% EtOAc in CH2CL2, to provide tert-butyl (2R,5S)-4-(6-chloro-1-(4,6-diisopropyl-2-methylpyrimidin-5-yl)-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.207 g, 0.312 mmol, 76% yield) as light-yellow solid. m/z (ESI, +ve ion): 664.2 (M+H)+.
Step 2. 4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-1-(4,6-diisopropyl-2-methylpyrimidin-5-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-oneTo a 100-mL round-bottomed flask was added tert-butyl (2R,5S)-4-(6-chloro-1-(4,6-diisopropyl-2-methylpyrimidin-5-yl)-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.200 g, 0.301 mmol) and trifluoroacetic acid (0.2 mL, 3.01 mmol) in 1,2-dichloroethane (3.0 mL). The reaction mixture was stirred and heated at 60° C. for 30 min, while under an inert (N2) atmosphere. The reaction mixture was concentrated in vacuo. This material was carried directly into the next step of the synthesis, without further purification.
The previous residue was diluted with 1,2-dichloroethane (3.0 mL), then the reaction mixture was cooled to 0° C. with a wet ice bath. Then n,n′-diisopropylethylamine (0.6 mL, 3.61 mmol) was added into the reaction mixture and stirred 2 min. Then acryloyl chloride (0.2 mL, 0.301 mmol) was added into the mixture dropwise and stirred under an inert (N2) atmosphere for 10 min. The mixture was diluted with EtOAc and sat. aq. NaHCO3, then the layers were separated. The aqueous layer was extracted with EtOAc, then the combined organic extracts were dried over MgSO4, filtered and concentrated in vacuo. The crude material was absorbed onto a plug of silica gel and purified by chromatography through a Interchim (15 micron) silica-gel column (25 grams), eluting with a gradient of 0-8% MeOH/DCM. This afforded 4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-1-(4,6-diisopropyl-2-methylpyrimidin-5-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-one (0.130 g, 0.210 mmol, 69.8% yield) as off-white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.42 (d, J=4.15 Hz, 1H) 7.41-7.49 (m, 1H) 7.19-7.29 (m, 2H) 7.10-7.17 ((m, 1H) 6.77 (td, J=17.00, 10.57 Hz, 1H) 6.13 (dd, J=16.69, 1.97 Hz, 1H) 5.65-5.73 (m, 1H) 4.76-4.87 (m, 1H) 4.71 (br s, 1H) 4.03-4.22 (m, 1H) 3.65-3.87 (m, 2H) 2.50-2.69 (m, 5H) 1.16-1.38 (m, 5H) 1.12 (br d, J=6.84 Hz, 2H) 1.00 (br d, J=3.73 Hz, 3H) 0.99 (br d, J=3.73 Hz, 3H) 0.82-0.90 (m, 6H). m/z (ESI, +ve ion): 618.0 (M+H)+.
Example 168 6-Chloro-1-(2-cyclopropyl-4,6-diisopropyl-pyrimidin-5-yl)-4-[(2S,5R)-2,5-dimethyl-4-prop-2-enoyl-piperazin-1-yl]-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2-oneTo a 100-mL round-bottomed flask was added tert-butyl (2R,5S)-4-(1-(2-bromo-4,6-diisopropylpyrimidin-5-yl)-6-chloro-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.300 g, 0.411 mmol, Intermediate 232) in tetrahydrofuran (4.1 mL). The reaction mixture was degassed by bubbling argon (gas) into the mixture for 5 min. Then cyclopropylzinc bromide (0.5M in THF) (1.4 mL, 0.720 mmol) and xantphos pd g3 (0.012 g, 0.012 mmol) was added into the reaction mixture. The overall reaction mixture was allowed to stir under an inert (N2) atmosphere at rt for 30 min. The reaction mixture was quenched with sat. aq. NH4Cl and diluted the mixture with EtOAc. The layers were separated and the aqueous layer was extracted with EtOAc. The combined organic extracts were dried over MgSO4, filtered and concentrated in vacuo. The crude material was absorbed onto a plug of silica gel and purified by chromatography through a Interchim (25 micron) silica-gel column (25 grams), eluting with a gradient of 0-40% EtOAc in CH2CL2, to provide tert-butyl (2R,5S)-4-(6-chloro-1-(2-cyclopropyl-4,6-diisopropylpyrimidin-5-yl)-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.275 g, 0.398 mmol, 97% yield) as tan solid. m/z (ESI, +ve ion): 690.2 (M+H)+.
Step 2. 4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-1-(2-cyclopropyl-4,6-diisopropylpyrimidin-5-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-oneTo a 100-mL round-bottomed flask was added tert-butyl (2R,5S)-4-(6-chloro-1-(2-cyclopropyl-4,6-diisopropylpyrimidin-5-yl)-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.265 g, 0.384 mmol) and trifluoroacetic acid (0.2 mL, 3.84 mmol) in 1,2-dichloroethane (3.8 mL). The reaction mixture was stirred and heated at 60° C. for 30 min, while under an inert (N2) atmosphere. The reaction mixture was concentrated in vacuo. This material was carried directly into the next step of the synthesis, without further purification.
The previous residue was diluted with 1,2-dichloroethane (3.8 mL), then the reaction mixture was cooled to 0° C. with a wet ice bath. Then n,n′-diisopropylethylamine (0.8 mL, 4.61 mmol) was added into the reaction mixture and stirred 2 min. Then acryloyl chloride (0.3 mL, 0.384 mmol) was added into the mixture dropwise and stirred under an inert (N2) atmosphere for 10 min. The mixture was diluted with EtOAc and sat. aq. NaHCO3, then the layers were separated. The aqueous layer was extracted with EtOAc, then the combined organic extracts were dried over MgSO4, filtered and concentrated in vacuo. The crude material was absorbed onto a plug of silica gel and purified by chromatography through a Interchim (15 micron) silica-gel column (40 grams), eluting with a gradient of 0-8% MeOH/DCM. This afforded 4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-1-(2-cyclopropyl-4,6-diisopropylpyrimidin-5-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-one (0.180 g, 0.279 mmol, 72.8% yield) as off-white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.41 (d, J=3.94 Hz, 1H) 7.39-7.54 (m, 1H) 7.19-7.34 (m, 2H) 7.10-7.19 (m, 1H) 6.77 (td, J=16.90, 10.57 Hz, 1H) 6.13 (dd, J=16.59, 2.07 Hz, 1H) 5.64-5.73 (m, 1H) 4.75-4.87 (m, 1H) 4.71 (br s, 1H) 4.01-4.22 (m, 1H) 3.70-3.92 (m, 2H) 2.47-2.63 (m, 2H) 2.04-2.13 (m, 1H) 1.07-1.33 (m, 7H) 0.90-1.02 (m, 10H) 0.85 (dd, J=6.53, 3.01 Hz, 6H). m/z (ESI, +ve ion): 644.2 (M+H)+.
Example 169 6-Chloro-4-[(2S,5R)-2,5-dimethyl-4-prop-2-enoyl-piperazin-1-yl]-1-(2-ethyl-4,6-diisopropyl-pyrimidin-5-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2-oneTo a 100-mL round-bottomed flask was added tert-butyl (2R,5S)-4-(1-(2-bromo-4,6-diisopropylpyrimidin-5-yl)-6-chloro-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.200 g, 0.274 mmol, Intermediate 232) in tetrahydrofuran (1.6 mL). The reaction mixture was degassed by bubbling argon (gas) into the mixture for 5 min. Then triethylaluminum (1.0M in THF) (0.6 mL, 0.686 mmol) and tetrakis (0.032 g, 0.027 mmol) was added into the reaction mixture. The mixture was stirred and heated at 60° C. for 16 h, while under an inert (N2) atmosphere. The reaction was quench with sat. aq. NaHCO3 and diluted with mixture with EtOAc and brine. The layers were separated and the aqueous layer was extracted with EtOAc. The combined organic extracts were dried over MgSO4, filtered and concentrated in vacuo. The crude material was carried into the next step of the synthesis, without further purification. m/z (ESI, +ve ion): 678.2 (M+H)+.
Step 2. 4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-1-(2-ethyl-4,6-diisopropylpyrimidin-5-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-oneTo a 100-mL round-bottomed flask was added tert-butyl (2R,5S)-4-(6-chloro-1-(2-ethyl-4,6-diisopropylpyrimidin-5-yl)-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.036 g, 0.053 mmol) and trifluoroacetic acid (0.1 mL, 0.531 mmol) in 1,2-dichloroethane (1.5 mL). The reaction mixture was stirred and heated at 60° C. for 30 min, while under an inert (N2) atmosphere. The reaction mixture was concentrated in vacuo. This material was carried directly into the next step of the synthesis, without further purification.
The previous residue was diluted with 1,2-dichloroethane (0.5 mL), then the reaction mixture was cooled to 0° C. with a wet ice bath. Then n,n′-diisopropylethylamine (0.1 mL, 0.637 mmol) was added into the reaction mixture and stirred 2 min. Then acryloyl chloride (0.1 mL, 0.053 mmol) was added into the mixture dropwise and stirred under an inert (N2) atmosphere for 10 min. The mixture was diluted with EtOAc and sat. aq. NaHCO3, then the layers were separated. The aqueous layer was extracted with EtOAc, then the combined organic extracts were dried over MgSO4, filtered and concentrated in vacuo. The crude material was absorbed onto a plug of silica gel and purified by chromatography through a Interchim (15 micron) silica-gel column (40 grams), eluting with a gradient of 0-8% MeOH/DCM. This afforded 4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-1-(2-ethyl-4,6-diisopropylpyrimidin-5-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-one (0.033 g, 0.052 mmol, 98% yield) as off-white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.48 (d, J=4.15 Hz, 1H) 7.49-7.55 (m, 1H) 7.26-7.34 (m, 2H) 7.20 (td, J=7.36, 1.66 Hz, 1H) 6.77-6.89 (m, 1H) 6.19 (dd, J=16.59, 2.28 Hz, 1H) 5.73-5.78 (m, 1H) 4.87 (br s, 1H) 4.78 (br s, 1H) 4.10-4.25 (m, 1H) 3.79-3.95 (m, 2H) 2.87 (q. J=7.67 Hz, 2H) 2.61-2.73 (m, 2H) 1.34 (t, J=5.91 Hz, 3H) 1.26-1.30 (m, 4H) 1.24 (br d, J=3.32 Hz, 3H) 1.07 (dd, J=6.74, 3.84 Hz, 6H) 0.93 (dd, J=6.63, 3.32 Hz, 6H). m/z (ESI, +ve ion): 632.2 (M+H)+.
Example 170 6-Chloro-1-[4,6-diisopropyl-2-[(4-methylpiperazin-1-yl)methyl]pyrimidin-5-yl]-4-[(2S,5R)-2,5-dimethyl-4-prop-2-enoyl-piperazin-1-yl]-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2-oneTo a 50-mL round-bottomed flask was added tert-butyl (2R,5S)-4-(3-chloro-2-(2-fluorophenyl)-8-(2-formyl-4,6-diisopropylpyrimidin-5-yl)-7-oxo-7,8-dihydro-1,6-naphthyridin-5-yl)-2,5-dimethylpiperazine-1-carboxylate (Intermediate 235, 0.265 g, 0.391 mmol) and 1-methylpiperazine (0.1 mL, 0.587 mmol) in tetrahydrofuran (3.9 mL). Then glacial acetic acid (2.3 μl, 0.039 mmol), followed by sodium cyanoborohydride (0.074 g, 1.174 mmol) was added into the reaction mixture. The overall reaction mixture was allowed to stir at rt, while under an inert (N2) atmosphere for 30 min. The reaction mixture was quenched with MeOH (1 mL) and allowed the mixture to stir 5 min. Then the mixture was diluted with EtOAc and sat. aq. NaHCO3. The layers were separated and the aqueous layer was extracted with EtOAc. The combined organic extracts were dried over MgSO4, filtered and concentrated in vacuo. The crude material (0.250 g) was carried into the next step of the synthesis, without further purification. m/z (ESI, +ve ion): 762.2 (M+H)+.
Step 2. 4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-1-(4,6-diisopropyl-2-((4-methylpiperazin-1-yl)methyl)pyrimidin-5-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-oneTo a 100-mL round-bottomed flask was added tert-butyl (2R,5S)-4-(6-chloro-1-(4,6-diisopropyl-2-((4-methylpiperazin-1-yl)methyl)pyrimidin-5-yl)-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.250 g, 0.328 mmol) and trifluoroacetic acid (0.2 mL, 3.28 mmol) in 1,2-dichloroethane (1.5 mL). The reaction mixture was stirred and heated at 60° C. for 30 min, while under an inert (N2) atmosphere. The reaction mixture was concentrated in vacuo. This material was carried directly into the next step of the synthesis, without further purification.
The previous residue was diluted with 1,2-dichloroethane (1.5 mL), then the reaction mixture was cooled to 0° C. with a wet ice bath. Then n,n′-diisopropylethylamine (0.6 mL, 3.94 mmol) was added into the reaction mixture and stirred 2 min. Then acryloyl chloride (0.2 mL, 0.328 mmol) was added into the mixture dropwise and stirred under an inert (N2) atmosphere for 10 min. The mixture was diluted with EtOAc and sat. aq. NaHCO3, then the layers were separated. The aqueous layer was extracted with EtOAc, then the combined organic extracts were dried over MgSO4. filtered and concentrated in vacuo. The crude material was absorbed onto a plug of silica gel and purified by chromatography through a Interchim (15 micron) silica-gel column (25 grams), eluting with a gradient of 0-5% MeOH/DCM. This afforded 4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-1-(4,6-diisopropyl-2-((4-methylpiperazin-1-yl)methyl)pyrimidin-5-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-one (0.050 g, 0.070 mmol, 21.29% yield) as white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.48 (d, J=4.77 Hz, 1H) 7.48-7.55 (m, 1H) 7.16-7.33 (M, 3H) 6.84 (td, J=17.31, 10.78 Hz, 1H) 6.19 (br d, J=16.59 Hz, 1H) 5.75 (br d, J=10.16 Hz, 1H) 4.88 (br s, 1H) 4.78 (br s, 1H) 4.43-4.54 (m, 1H) 4.13-4.26 (m, 1H) 3.79-3.93 (m, 2H) 3.70-3.76 (m, 2H) 3.39-3.55 (m, 1H) 2.53-2.78 (m, 6H) 2.28-2.37 (m, 3H) 2.15 (s, 3H) 1.34 (br t, J=5.49 Hz, 3H) 1.26 (br d, J=6.43 Hz, 1H) 1.19 (br d, J=6.63 Hz, 2H) 1.02-1.10 (m, 6H) 0.92 (br d, J=6.63 Hz, 6H). m/z (ESI, +ve ion): 716.3 (M+H)+.
Example 171 6-Chloro-4-[(2S,5R)-2,5-dimethyl-4-prop-2-enoyl-piperazin-1-yl]-7-(2-fluorophenyl)-1-[2-(3-furyl)-4,6-diisopropyl-pyrimidin-5-yl]pyrido[2,3-d]pyrimidin-2-oneTo a 50-mL round-bottomed flask was added tert-butyl (2R,5S)-4-(1-(2-bromo-4,6-diisopropylpyrimidin-5-yl)-6-chloro-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (Intermediate 232. 0.080 g, 0.110 mmol) and sodium carbonate (0.035 g, 0.329 mmol) in 1,4-dioxane (2.4 mL). The reaction mixture was degassed by bubbling argon (gas) into the mixture for 5 min. Then xantphos pd g3 (5.20 mg, 5.49 μmol), water (0.6 mL) and 3-furanboronic acid (0.1 mL, 0.274 mmol) was added into the reaction mixture. The overall reaction mixture was stirred and heated at 80° C. for 16 h. The reaction mixture was cooled to rt, then the mixture was diluted with sat. aq. NaHCO3 and EtOAc. The layers were separated and the aqueous layer was extracted with EtOAc. The combined organic extracts were dried over MgSO4, filtered and concentrated in vacuo. The crude material was absorbed onto a plug of silica gel and purified by chromatography through a Interchim (15 micron) silica-gel column (15 grams), eluting with a gradient of 0-25% EtOAc in CH2CL2, to provide tert-butyl (2R,5S)-4-(6-chloro-7-(2-fluorophenyl)-1-(2-(furan-3-yl)-4,6-diisopropylpyrimidin-5-yl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.070 g, 0.098 mmol, 89% yield) as tan solid. m/z (ESI, +ve ion): 716.2 (M+H)+.
Step 2. 4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-7-(2-fluorophenyl)-1-(2-(furan-3-yl)-4,6-diisopropylpyrimidin-5-yl)pyrido[2,3-d]pyrimidin-2(1H)-oneTo a 100-mL round-bottomed flask was added tert-butyl (2R,5S)-4-(6-chloro-7-(2-fluorophenyl)-1-(2-(furan-3-yl)-4,6-diisopropylpyrimidin-5-yl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.070 g, 0.098 mmol) and trifluoroacetic acid (0.1 mL, 0.977 mmol) in 1,2-dichloroethane (1.7 mL). The reaction mixture was stirred and heated at 60° C. for 20 min, while under an inert (N2) atmosphere. The reaction mixture was concentrated in vacuo. This material was carried directly into the next step of the synthesis, without further purification.
The previous residue was diluted with DCM (4 mL), then the reaction mixture was cooled to 0° C. with a wet ice bath. Then n,n′-diisopropylethylamine (0.2 mL, 1.173 mmol) was added into the reaction mixture and allowed the mixture to stir 2 min. Then acryloyl chloride (7.9 μl, 0.098 mmol) was added into the mixture dropwise over 2 min. The mixture was diluted with DCM and sat. aq. NaHCO3, then the layers were separated. The aqueous layer was extracted with DCM. The combined organic extracts were dried over MgSO4, filtered and concentrated in vacuo. The crude material was absorbed onto a plug of silica gel and purified by chromatography through a Interchim (15 micron) silica-gel column (25 grams), eluting with a gradient of 0-65% EtOAc/DCM. This afforded 4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-7-(2-fluorophenyl)-1-(2-(furan-3-yl)-4,6-diisopropylpyrimidin-5-yl)pyrido[2,3-d]pyrimidin-2(1H)-one (0.010 g, 0.015 mmol, 15.27% yield) as white solid. 1H NMR (500 MHz, DMSO-d6) δ 8.49 (d, J=6.36 Hz, 1H) 8.39 (d, J=0.78 Hz, 1H) 7.79 (t, J=1.69 Hz, 1H) 7.46-7.53 (m, 1H) 7.19-7.33 (m, 3H) 7.02 (d, J=1.17 Hz, 1H) 6.79-6.90 (m, 1H) 6.17-6.22 (m, 1H) 5.73-5.78 (m, 1H) 4.84-4.94 (m, 1H) 4.14-4.26 (m, 1H) 3.81-3.95 (m, 2H) 2.65-2.77 (m, 2H) 2.54 (s, 2H) 1.30-1.40 (m, 3H) 1.16-1.28 (m, 3H) 1.12 (br d, J=4.02 Hz, 3H) 1.11 (br d, J=4.15 Hz, 3H) 0.94-1.01 (m, 6H). m/z (ESI, +ve ion): 670.2 (M+H)+.
Example 172 6-Chloro-1-(4,6-diisopropylpyrimidin-5-yl)-4-[(2S,5R)-2,5-dimethyl-4-prop-2-enoyl-piperazin-1-yl]-7-[2-(trifluoromethyl)phenyl]pyrido[2,3-d]pyrimidin-2-oneTo a 100-mL round-bottomed flask was added 6,7-dichloro-1-(4,6-diisopropylpyrimidin-5-yl)pyrido[2,3-d]pyrimidine-2,4(1H,3H)-dione (0.300 g, 0.761 mmol, Intermediate 205) and potassium acetate (0.224 g, 2.283 mmol) in 1,4-dioxane (3.8 mL). The reaction mixture was deoxygenated by bubbling (N2) gas into the mixture 5 min. Then (1,1′-bis(diphenylphosphino) ferrocene) dichloropalladium (0.056 g, 0.076 mmol) was added into the reaction mixture. The reaction mixture was stirred and heated at 80° C. for 10 min. Then a solution of (2-(trifluoromethyl)phenyl)boronic acid (0.217 g, 1.141 mmol) in 1,4-dioxane (1 mL) was added into the mixture, followed by water (0.1 mL). The resulting reaction mixture was heated and stirred at 95° C. for 16 h. The reaction mixture was allowed to cool to ambient temperature, then the reaction mixture was diluted with sat. aq. NH4Cl and EtOAc. The aqueous layer was extracted with EtOAc and brine. The combined organic extracts were dried over MgSO4, filtered and concentrated in vacuo. The crude material was absorbed onto a plug of silica gel and purified by chromatography through a Redi-Sep pre-packed silica gel column (40 g), eluting with a gradient of 0-30% EtOAc in CH2CL2, to provide 6-chloro-1-(4,6-diisopropylpyrimidin-5-yl)-7-(2-(trifluoromethyl)phenyl)pyrido[2,3-d]pyrimidine-2,4(1H,3H)-dione (0.163 g, 0.323 mmol, 42.5% yield) as white solid. m/z (ESI, +ve ion): 504.1 (M+H)+.
Step 2. 4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-1-(4,6-diisopropylpyrimidin-5-yl)-7-(2-(trifluoromethyl)phenyl)pyrido[2,3-d]pyrimidin-2(1H)-oneTo a 100-mL round-bottomed flask was added 6-chloro-1-(4,6-diisopropylpyrimidin-5-yl)-7-(2-(trifluoromethyl)phenyl)pyrido[2,3-d]pyrimidine-2,4(1H,3H)-dione (0.150 g, 0.298 mmol) and n,n-diisopropylethylamine (0.1 mL, 0.387 mmol) in acetonitrile (1.4 mL). Then phosphorous oxychloride (0.1 mL, 0.357 mmol) was added into the reaction mixture, then the mixture was heated and stirred at 80° C. for 30 min, while under an inert (N2) atmosphere. Another aliquot of n,n-diisopropylethylamine (0.1 mL, 0.387 mmol) and phosphorous oxychloride (0.1 mL, 0.357 mmol) was added into the mixture, then allowed the mixture to stir an additional 10 min. The reaction mixture was removed from the heat bath and allowed to cool to rt.
The reaction mixture was cooled to 0° C. with a wet ice/water bath. Then DIPEA (3 mL) was added dropwise into the reaction mixture. Then a solution of 1-((2R,5S)-2,5-dimethylpiperazin-1-yl)prop-2-en-1-one (0.233 g, 0.595 mmol, Intermediate 160) in MeCN (10 mL) was added dropwise into the reaction mixture. The ice bath was removed and the mixture was allowed to warm to rt over 20 min. More DIPEA (3 mL) and 1-((2R,5S)-2,5-dimethylpiperazin-1-yl)prop-2-en-1-one (0.233 g, 0.595 mmol, Intermediate 160) was added into the reaction mixture and stirred an additional 10 min. The reaction mixture was diluted with EtOAc and sat. aq. NH4Cl. The aqueous layer was extracted with EtOAc. The combined organic extracts were dried over MgSO4, filtered and concentrated in vacuo. The crude material was absorbed onto a plug of silica gel and purified by chromatography through a Interchim (25 micron) silica-gel column (80 grams), eluting with a gradient of 0-80% EtOAc in CH2CL2, to provide 4-((2S,5R)-4-acryloyl-2,5-<dimethylpiperazin-1-yl)-6-chloro-1-(4,6-diisopropylpyrimidin-5-yl)-7-(2-(trifluoromethyl)phenyl)pyrido[2,3-d]pyrimidin-2(1H)-one (0.020 g, 0.031 mmol, 10.27% yield) as white solid. 1H NMR (500 MHz, DMSO-d6) δ 9.02 (s, 1H) 8.60 (br s, 1H) 7.81 (d, J=7.78 Hz, 1H) 7.77 (t, J=7.56 Hz, 1H) 7.66-7.71 (m, 1H) 7.35 (br s, 1H) 6.82 (br dd, J=16.67, 10.45 Hz, 1H) 6.19 (dd, J=16.67, 2.27 Hz, 1H) 5.74-5.78 (m, 1H) 4.64-5.02 (m, 2H) 4.09 (br d, J=5.32 Hz, 1H) 4.04 (br s, 1H) 3.88 (br s, 2H) 2.64-2.83 (m, 2H) 1.30-1.38 (m, 3H) 1.21-1.30 (m, 2H) 1.19 (br s, 1H) 1.07 (br s, 6H) 0.92 (br s, 6H). m/z (ESI, +ve ion): 654.2 (M+H)+.
Example 173-1 (Peak 1) 6-Chloro-4-[(2S,5R)-2,5-dimethyl-4-prop-2-enoyl-piperazin-1-yl]-7-(2-fluorophenyl)-1-(6-isopropenyl-2-isopropyl-4-methyl-3-pyridyl)pyrido[2,3-d]pyrimidin-2-oneTo a 50-mL round-bottomed flask was added tert-butyl (2R,5S)-4-(1-(6-bromo-2-isopropyl-4-methylpyridin-3-yl)-6-chloro-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.420 g, 0.600 mmol, Intermediate 202) and sodium carbonate (0.191 g, 1.800 mmol) in 1,4-dioxane (2.4 mL). The reaction mixture was degassed by bubbling argon (gas) into the mixture for 5 min. Then xantphos pd g3 (0.028 g, 0.030 mmol), water (0.6 mL) and 2-isopropenyl boronic acid pinacol ester (0.2 mL, 1.500 mmol) was added into the reaction mixture. The overall reaction mixture was stirred and heated at 100° C. for 16 h. The reaction mixture was cooled to rt, then the mixture was diluted with sat. aq. NaHCO3 and EtOAc. The layers were separated and the aqueous layer was extracted with EtOAc. The combined organic extracts were dried over MgSO4, filtered and concentrated in vacuo. The crude material was absorbed onto a plug of silica gel and purified by chromatography through a Interchim (25 micron) silica-gel column (40 grams), eluting with a gradient of 0-20% EtOAc in CH2CL2, to provide tert-butyl (2R,5S)-4-(6-chloro-7-(2-fluorophenyl)-1-(2-isopropyl-4-methyl-6-(prop-1-en-2-yl)pyridin-3-yl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.200 g, 0.302 mmol, 50.4% yield) as white solid. m/z (ESI, +ve ion): 661.3 (M+H)+.
Step 2. 4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-7-(2-fluorophenyl)-1-(2-isopropyl-4-methyl-6-(prop-1-en-2-yl)pyridin-3-yl)pyrido[2,3-d]pyrimidin-2(1H)-oneTo a 100-mL round-bottomed flask was added tert-butyl (2R,5S)-4-(6-chloro-7-(2-fluorophenyl)-1-(2-isopropyl-4-methyl-6-(prop-1-en-2-yl)pyridin-3-yl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.200 g, 0.302 mmol) and trifluoroacetic acid (0.2 mL, 3.02 mmol) in 1,2-dichloroethane (3.0 mL). The reaction mixture was stirred and heated at 60° C. for 30 min. while under an inert (N2) atmosphere. The reaction mixture was concentrated in vacuo. This material was carried directly into the next step of the synthesis, without further purification.
The previous residue was diluted with 1,2-dichloroethane (3.0 mL), then the reaction mixture was cooled to 0° C. with a wet ice bath. Then n,n′-diisopropylethylamine (0.6 mL, 3.63 mmol) was added into the reaction mixture and stirred 2 min. Then acryloyl chloride (0.2 mL, 0.302 mmol) was added into the mixture dropwise and stirred under an inert (N2) atmosphere for 10 min. The mixture was diluted with EtOAc and sat. aq. NaHCO3. then the layers were separated. The aqueous layer was extracted with EtOAc, then the combined organic extracts were dried over MgSO4. filtered and concentrated in vacuo. The crude material was absorbed onto a plug of silica gel and purified by chromatography through a Interchim (15 micron) silica-gel column (40 grams), eluting with a gradient of 0-6% MeOH/DCM. The racemic mixture was separated by SFC; (Column, IC, 5 μm, 21×250 mm, F=80 mL/min, 30% Isopropanol/70% Carbon dioxide). This afforded the separated Atropisomers, which were arbitrarily assigned as (Peak 1) 4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-7-(2-fluorophenyl)-1-(2-isopropyl-4-methyl-6-(prop-1-en-2-yl)pyridin-3-yl)pyrido[2,3-d]pyrimidin-2(1H)-one (0.060 g, 0.098 mmol, 32.2% yield) as white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.47 (d, J=3.52 Hz, 1H) 7.46-7.56 (m, 1H) 7.43 (s, 1H) 7.22-7.35 (m, 3H) 6.84 (td, J=16.74, 10.47 Hz, 1H) 6.20 (dd, J=16.79, 1.87 Hz, 1H) 5.97 (s, 1H) 5.73-5.79 (m, 1H) 5.30 (s, 1H) 4.86 (br s, 1H) 4.78 (br s, 1H) 4.12-4.23 (m, 1H) 3.80-4.00 (m, 2H) 2.66-2.75 (m, 1H) 2.15 (s, 3H) 1.95 (s, 3H) 1.32-1.39 (m, 3H) 1.24-1.28 (m, 2H) 1.17-1.21 (m, 2H) 1.09 (d, J=6.84 Hz, 3H) 0.99 (d, J=6.63 Hz, 3H). m/z (ESI, +ve ion): 615.2 (M+H)+.
Example 173-2 (Peak 2)The racemic mixture from example 173-1 was separated by SFC; (Column. IC, 5 μm, 21×250 mm, F=80 mL/min, 30% Isopropanol/70% Carbon dioxide). This afforded the separated Atropisomers, which were arbitrarily assigned as (Peak 2) 1H NMR (500 MHz, DMSO-d6) δ 8.48 (d, J=3.76 Hz, 1H) 7.49-7.54 (m, 1H) 7.44 (s, 1H) 7.23-7.33 (m, 3H) 6.83 (td, J=17.06, 10.51 Hz, 1H) 6.19 (br d, J=16.74 Hz, 1H) 5.96 (s, 1H) 5.73-5.78 (m, 1H) 5.29 (s, 1H) 4.83-4.91 (m, 1H) 4.76 (br s, 1H) 4.10-4.21 (m, 2H) 3.80-3.97 (m, 2H) 2.64-2.71 (m, 1H) 2.14 (s, 3H) 1.97 (s, 3H) 1.30-1.37 (m, 3H) 1.24 (d, J=6.49 Hz, 1H) 1.16 (d, J=6.75 Hz, 2H) 1.07 (d, J=6.75 Hz, 3H) 0.95 (d, J=6.75 Hz, 3H). m/z (ESI, +ve ion): 615.4 (M+H)+.
Example 174 6-Chloro-1-(4,6-diisopropylpyrimidin-5-yl)-4-[(2S,5R)-2,5-dimethyl-4-prop-2-enoyl-piperazin-1-yl]-7-(5-hydroxy-2-methyl-phenyl)pyrido[2,3-d]pyrimidin-2-oneTo a 100-mL round-bottomed flask was added 6,7-dichloro-1-(4,6-diisopropylpyrimidin-5-yl)pyrido[2,3-d]pyrimidine-2,4(1H,3H)-dione (0.400 g, 1.015 mmol, Intermediate 205) and potassium acetate (0.299 g, 3.04 mmol) in 1,4-dioxane (7.6 mL). The reaction mixture was deoxygenated by bubbling (N2) gas into the mixture 5 min. Then PdCl2(dppf) (0.074 g, 0.101 mmol) was added into the reaction mixture. The mixture was stirred and heated at 105° C. for 10 min. Then a solution of (5-methoxy-2-methylphenyl)boronic acid (0.3 mL, 2.029 mmol) in 1,4-dioxane (1 mL) was added into the mixture, followed by water (1.9 mL). The resulting reaction mixture was heated and stirred at 105° C. for 3 h. The reaction mixture was allowed to cool to ambient temperature, then diluted the mixture with sat. aq. NH4Cl and EtOAc. The aqueous layer was extracted with EtOAc and brine. The combined organic extracts were dried over MgSO4. filtered and concentrated in vacuo. The crude material was absorbed onto a plug of silica gel and purified by chromatography through a Redi-Sep pre-packed silica gel column (40 g), eluting with a gradient of 0-20% EtOAc in CH2CL2, to provide 6-chloro-1-(4,6-diisopropylpyrimidin-5-yl)-7-(5-methoxy-2-methylphenyl)pyrido[2,3-d]pyrimidine-2,4(1H,3H)-dione (0.450 g, 0.938 mmol, 92% yield) as tan solid. 1H NMR (400 MHz, DMSO-d6) δ 12.28 (s, 1H) 9.07 (s, 1H) 8.57 (s, 1H) 7.16 (d, J=8.50 Hz, 1H) 6.85-6.93 (m, 1H) 6.51 (d, J=2.70 Hz, 1H) 3.63-3.67 (m, 3H) 2.98 (quin, J=6.63 Hz, 2H) 1.85 (s, 3H) 1.09 (d, J=6.63 Hz, 6H) 0.95 (d, J=6.63 Hz, 6H). m/z (ESI, +ve ion): 480.1 (M+H)+.
Step 2. 4-((2S,5R)-4-((11-Boraneyl)carbonyl)-2,5-dimethylpiperazin-1-yl)-6-chloro-1-(4,6-diisopropylpyrimidin-5-yl)-7-(5-methoxy-2-methylphenyl)pyrido[2,3-d]pyrimidin-2(1H)-oneTo a 100-mL round-bottomed flask was added 6-chloro-1-(4,6-diisopropylpyrimidin-5-yl)-7-(5-methoxy-2-methylphenyl)pyrido[2,3-d]pyrimidine-2,4(1H,3H)-dione (0.450 g, 0.938 mmol) and n,n-diisopropylethylamine (0.2 mL, 1.219 mmol) in acetonitrile (6.2 mL). Then phosphorous oxychloride (0.1 mL, 1.125 mmol) was added into the reaction mixture, then the mixture was heated and stirred at 80° C. for 30 min, while under an inert (N2) atmosphere. The reaction mixture was removed from the heat bath and allowed to cool to rt.
The reaction mixture was cooled to 0° C. with a wet ice/water bath. Then DIPEA (2.5 mL) was added dropwise into the reaction mixture. Then a solution of (2r,5s)-1-boc-2,5-dimethylpiperazine (0.301 g, 1.406 mmol) in MeCN (4 mL) was added dropwise into the reaction mixture. The ice bath was removed and the mixture was allowed to warm to rt. The reaction mixture was diluted with DCM and sat. aq. NH4Cl. The aqueous layer was extracted with DCM. The combined organic extracts were dried over MgSO4, filtered and concentrated in vacuo. The crude material was absorbed onto a plug of silica gel and purified by chromatography through a Interchim (25 micron) silica-gel column (120 grams), eluting with a gradient of 0-10% MeOH in CH2CL2, to provide tert-butyl (2R,5S)-4-(6-chloro-1-(4,6-diisopropylpyrimidin-5-yl)-7-(5-methoxy-2-methylphenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.600 g, 0.887 mmol, 95% yield) as tan solid. m/z (ESI, +ve ion): 676.3 (M+H)+.
Step 3. tert-Butyl (2R,5S)-4-(6-chloro-1-(4,6-diisopropylpyrimidin-5-yl)-7-(5-hydroxy-2-methylphenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylateTo a 50-mL round-bottomed flask was added tert-butyl (2R,5S)-4-(6-chloro-1-(4,6-diisopropylpyrimidin-5-yl)-7-(5-methoxy-2-methylphenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.600 g, 0.887 mmol) in 1,2-dichloroethane (17.7 mL). Then boron tribromide (1.0M in DCM) (4.4 mL, 4.44 mmol) was added dropwise into the reaction mixture, while the mixture was under an inert (N2) atmosphere. The resulting reaction mixture was allowed to stir 30 min. The reaction mixture was quenched with the addition of MeOH (3 mL) and allowed the mixture to stir 10 min. Then the reaction mixture was diluted with DCM and sat. aq. NaHCO3. The aqueous layer was extracted with DCM and the combined organic extracts were dried over MgSO4, filtered and concentrated in vacuo. This afforded tert-butyl (2R,5S)-4-(6-chloro-1-(4,6-diisopropylpyrimidin-5-yl)-7-(5-hydroxy-2-methylphenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate as tan solid. The crude mixture (0.499 grams) was carried into the next step of the synthesis, without further purification. m/z (ESI, +ve ion): 562.2 (M−BOC+H)+.
Step 4. 4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-1-(4,6-diisopropylpyrimidin-5-yl)-7-(5-hydroxy-2-methylphenyl)pyrido[2,3-d]pyrimidin-2(1H)-oneTo a 100-mL round-bottomed flask was added 6-chloro-1-(4,6-diisopropylpyrimidin-5-yl)-4-((2S,5R)-2,5-dimethylpiperazin-1-yl)-7-(5-hydroxy-2-methylphenyl)pyrido[2,3-d]pyrimidin-2(1H)-one (0.499 g, 0.888 mmol) and n,n′-diisopropylethylamine (0.2 mL, 1.332 mmol) in 1,2-dichloroethane (4.4 mL). Then acryloyl chloride (1.1M in DCM) (0.8 mL, 0.888 mmol) was added slowly into the reaction mixture. The overall reaction mixture was allowed to stir under an inert (N2) atmosphere 10 min. The reaction mixture was quenched with sat. aq. NH4Cl, then diluted the mixture with DCM and water. The layers were separated and the aqueous layer was extracted with DCM. The combined organic extracts were dried over MgSO4, filtered and concentrated in vacuo. The crude material was absorbed onto a plug of silica gel and purified by chromatography through a Redi-Sep pre-packed silica gel column (80 g), eluting with a gradient of 0-8% MeOH/DCM, to provide 4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-1-(4,6-diisopropylpyrimidin-5-yl)-7-(5-hydroxy-2-methylphenyl)pyrido[2,3-d]pyrimidin-2(1H)-one (0.175 g, 0.284 mmol, 32.0% yield) as off-white solid. 1H NMR (400 MHz, DMSO-d6) δ 9.40 (s, 1H) 9.04 (s, 1H) 8.45 (d, J=3.32 Hz, 1H) 7.02 (d, J=8.29 Hz, 1H) 6.84 (td, J=16.64, 10.68 Hz, 1H) 6.70 (dd, J=8.29, 2.49 Hz, 1H) 6.40 (d, J=2.49 Hz, 1H) 6.19 (dd, J=16.59, 2.07 Hz, 1H) 5.75 (br dd, J=10.68, 3.42 Hz, 1H) 4.87 (br s, 1H) 4.13-4.25 (m, 1H) 3.79-3.94 (m, 2H) 3.16-3.18 (m, 1H) 2.63-2.79 (m, 2H) 1.82 (s, 3H) 1.34 (br t, J=5.80 Hz, 3H) 1.25 (br d, J=6.63 Hz, 2H) 1.18 (br d, J=6.63 Hz, 2H) 1.08 (dd, J=6.32, 4.66 Hz, 6H) 0.95 (br t, J=5.70 Hz, 6H). m/z (ESI, +ve ion): 616.2 (M+H)+.
Example 175-1 (Peak 1) 1-[6-(Azetidin-1-yl)-2-isopropyl-4-methyl-3-pyridyl]-6-chloro-4-[(2S,5R)-2,5-dimethyl-4-prop-2-enoyl-piperazin-1-yl]-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2-oneTo a 50-mL round-bottomed flask was added 1-(6-bromo-2-isopropyl-4-methylpyridin-3-yl)-6-chloro-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidine-2,4(1H,3H)-dione (0.350 g, 0.695 mmol, Intermediate 236) and azetidine (0.3 mL, 6.95 mmol) in 1,4-dioxane (2.8 mL). The reaction mixture was stirred and heated at 70° C. while under an inert (N2) atmosphere overnight. The mixture was allowed to cool to ambient temperature, then diluted the mixture with EtOAc and water. The aqueous layer was extracted with EtOAc (3×) and the combined organic extracts were dried over MgSO4, filtered and concentrated in vacuo. The crude material was absorbed onto a plug of silica gel and purified by chromatography through a Redi-Sep pre-packed silica gel column (40 g), eluting with a gradient of 0-10% EtOAc in CH2CL2, to provide 1-(6-(azetidin-1-yl)-2-isopropyl-4-methylpyridin-3-yl)-6-chloro-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidine-2,4(1H,3H)-dione (0.240 g, 0.500 mmol, 72.0% yield) as yellow solid. 1H NMR (400 MHz, DMSO-d6) δ 12.12 (s, 1H) 8.53 (s, 1H) 7.43-7.56 (m, 1H) 7.19-7.38 (m, 3H) 6.10 (s, 1H) 3.85-4.04 (m, 4H) 2.68-2.74 (m, 1H) 2.23-2.32 (m, 2H) 1.88 (s, 3H) 1.03 (d, J=6.84 Hz, 3H) 0.88 (d, J=6.63 Hz, 3H). m/z (ESI, +ve ion): 480.0 (M+H)+.
Step 2. tert-Butyl (2R,5S)-4-(1-(6-(azetidin-1-yl)-2-isopropyl-4-methylpyridin-3-yl)-6-chloro-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylateTo a 100-mL round-bottomed flask was added 1-(6-(azetidin-1-yl)-2-isopropyl-4-methylpyridin-3-yl)-6-chloro-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidine-2,4(1H,3H)-dione (0.480 g, 1.000 mmol) and n,n-diisopropylethylamine (0.2 ml, 1.300 mmol) in acetonitrile (6.6 ml). Then phosphorous oxychloride (0.1 ml, 1.200 mmol) was added into the reaction mixture, then the mixture was heated and stirred at 80° C. for 30 min, while under an inert (N2) atmosphere. The reaction mixture was removed from the heat bath and allowed to cool to it.
The reaction mixture was cooled to 0° C. with a wet ice/water bath. Then DIPEA (2.5 mL) was added dropwise into the reaction mixture. Then a solution of (2r,5s)-1-boc-2,5-dimethylpiperazine (0.322 g, 1.500 mmol) in MeCN (4 mL) was added dropwise into the reaction mixture. The ice bath was removed and the mixture was allowed to warm to rt. The reaction mixture was diluted with DCM and sat. aq. NH4Cl. The aqueous layer was extracted with DCM. The combined organic extracts were dried over MgSO4, filtered and concentrated in vacuo. The crude material was absorbed onto a plug of silica gel and purified by chromatography through a Interchim (25 micron) silica-gel column (120 grams). eluting with a gradient of 0-30% EtOAc in CH2CL2, to provide tert-butyl (2R,5S)-4-(1-(6-(azetidin-1-yl)-2-isopropyl-4-methylpyridin-3-yl)-6-chloro-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.385 g, 0.569 mmol, 56.9% yield) as yellow solid. m/z (ESI, +ve ion): 676.2 (M+H)+.
Step 3. 4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-1-(6-(azetidin-1-yl)-2-isopropyl-4-methylpyridin-3-yl)-6-chloro-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-oneTo a 100-mL round-bottomed flask was added tert-butyl (2R,5S)-4-(1-(6-(azetidin-1-yl)-2-isopropyl-4-methylpyridin-3-yl)-6-chloro-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.381 g, 0.563 mmol) and trifluoroacetic acid (0.4 mL, 5.63 mmol) in 1,2-dichloroethane (3.0 mL). The reaction mixture was stirred and heated at 60° C. for 30 min. while under an inert (N2) atmosphere. The reaction mixture was concentrated in vacuo. This material was carried directly into the next step of the synthesis, without further purification.
The previous residue was diluted with 1,2-dichloroethane (3.0 mL), then the reaction mixture was cooled to 0° C. with a wet ice bath. Then n,n′-diisopropylethylamine (1.1 mL, 6.76 mmol) was added into the reaction mixture and stirred 2 min. Then acryloyl chloride (0.5 mL, 0.563 mmol) was added into the mixture dropwise and stirred under an inert (N2) atmosphere for 10 min. The mixture was diluted with EtOAc and sat. aq. NaHCO3, then the layers were separated. The aqueous layer was extracted with EtOAc, then the combined organic extracts were dried over MgSO4, filtered and concentrated in vacuo. The crude material was absorbed onto a plug of silica gel and purified by chromatography through a Interchim (15 micron) silica-gel column (40 grams), eluting with a gradient of 0-6% MeOH/DCM. The racemates were separated by SFC; (Column, ID, 5 μm, 21×250 mm, F=60 mL/min, 40% EtOH/60%: Carbon dioxide). This afforded the separated Atropisomers as Peak 1: 4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-1-(6-(azetidin-1-yl)-2-isopropyl-4-methylpyridin-3-yl)-6-chloro-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-one (0.118 g, 0.187 mmol, 33.2% yield) as light-yellow solid. 1H NMR (400 MHz, DMSO-d6) δ 8.44 (s, 1H) 7.43-7.60 (m, 1H) 7.23-7.38 (m, 3H) 6.82 (dt, J=16.53, 11.32 Hz, 1H) 6.11-6.22 (m, 2H) 5.75 (dt, J=12.75, 2.23 Hz, 1H) 4.84 (br s, 1H) 4.41-4.65 (m, 1H) 4.11 (br t, J=13.16 Hz, 2H) 3.90-3.94 (m, 4H) 3.79-3.87 (m, 1H) 2.28 (quin, J=7.31 Hz, 2H) 1.77-1.86 (m, 3H) 1.31 (br t, J=7.05 Hz, 3H) 1.22 (br d, J=6.63 Hz, 2H) 1.10-1.15 (m, 3H) 1.00 (d, J=6.63 Hz, 3H) 0.87 (d, J=6.63 Hz, 3H). m/z (ESI, +ve ion): 630.2 (M+H)+.
Example 175-2 (Peak 2)The racemates were separated by SFC; (Column, ID, 5 μm, 21×250 mm, F=60 mL/min, 40% EtOH/60%: Carbon dioxide). This afforded the separated Atropisomers as Peak 2: 4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-1-(6-(azetidin-1-yl)-2-isopropyl-4-methylpyridin-3-yl)-6-chloro-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-one (0.120 g, 0.190 mmol, 33.8% yield) as light-yellow solid. 1H NMR (400 MHz, DMSO-d6) δ 8.42 (s, 1H) 7.43-7.61 (m, 1H) 7.20-7.39 (m, 3H) 6.83 (td, J=16.27, 10.57 Hz, 1H) 6.19 (br d, J=16.38 Hz, 1H) 6.11 (s, 1H) 5.74 (br d, J=9.95 Hz, 1H) 4.82 (br s, 1H) 4.54-4.67 (m, 1H) 4.12 (br t, J=12.96 Hz, 2H) 3.89-3.95 (m, 4H) 3.85 (br s, 1H) 2.28 (quin, J=7.20 Hz, 2H) 1.79 (s, 3H) 1.31 (br t, J=7.05 Hz, 3H) 1.24 (br d, J=6.01 Hz, 2H) 1.10-1.15 (m, 3H) 0.99-1.03 (m, 3H) 0.90 (br d, J=6.43 Hz, 3H). m/z (ESI, +ve ion): 630.2 (M+H)+.
Example 176-1 (Peak 1) 6-Chloro-1-(2,6-diisopropyl-4-methyl-3-pyridyl)-4-[(2S,5R)-2,5-dimethyl-4-prop-2-enoyl-piperazin-1-yl]-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2-oneTo a 50-mL round-bottomed flask was added tert-butyl (2R,5S)-4-(1-(6-bromo-2-isopropyl-4-methylpyridin-3-yl)-6-chloro-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.400 g, 0.571 mmol, Intermediate 202) in tetrahydrofuran (2.8 mL). The reaction mixture was degassed by bubbling argon (gas) into the mixture for 5 min. Then 2-propylzinc bromide (1.0M in THF) (3.0 mL, 3.03 mmol) and xantphos pd g3 (0.016 g, 0.017 mmol) was added into the reaction mixture. The overall reaction mixture was allowed to stir under an inert (N2) atmosphere at rt for 16 h. The reaction mixture was quenched with sat. aq. NH4Cl and diluted the mixture with EtOAc. The layers were separated and the aqueous layer was extracted with EtOAc. The combined organic extracts were dried over MgSO4, filtered and concentrated in vacuo. The crude material was absorbed onto a plug of silica gel and purified by chromatography through a Interchim (25 micron) silica-gel column (25 grams), eluting with a gradient of 0-40% EtOAc in CH2CL2, to provide tert-butyl (2R,5S)-4-(6-chloro-1-(2,6-diisopropyl-4-methylpyridin-3-yl)-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.253 g, 0.381 mmol, 66.8% yield) as tan solid. m/z (ESI, +ve ion): 663.2 (M+H)+.
Step 2. 4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-1-(2,6-diisopropyl-4-methylpyridin-3-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-oneTo a 100-mL round-bottomed flask was added tert-butyl (2R,5S)-4-(6-chloro-1-(2,6-diisopropyl-4-methylpyridin-3-yl)-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.253 g, 0.381 mmol) and trifluoroacetic acid (0.2 mL, 3.81 mmol) in 1,2-dichloroethane (3.8 mL). The reaction mixture was stirred and heated at 60° C. for 30 min, while under an inert (N2) atmosphere. The reaction mixture was concentrated in vacuo. This material was carried directly into the next step of the synthesis, without further purification.
The previous residue was diluted with 1,2-dichloroethane (3.8 mL), then the reaction mixture was cooled to 0° C. with a wet ice bath. Then n,n′-diisopropylethylamine (0.8 mL, 4.58 mmol) was added into the reaction mixture and stirred 2 min. Then acryloyl chloride (0.3 mL, 0.381 mmol) was added into the mixture dropwise and stirred under an inert (N2) atmosphere for 10 min. The mixture was diluted with EtOAc and sat. aq. NaHCO3, then the layers were separated. The aqueous layer was extracted with EtOAc, then the combined organic extracts were dried over MgSO4, filtered and concentrated in vacuo. The crude material was absorbed onto a plug of silica gel and purified by chromatography through a Interchim (15 micron) silica-gel column (40 grams), eluting with a gradient of 0-6% MeOH/DCM. The racemates were separated by SFC; (Column, Chiralpak AD-H, 5 μm, 2×25 cm, F=80 mL/min, 25% Isopropanol/75%: Carbon dioxide). This afforded the separated Atropisomers as Peak 1: 4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-1-(2,6-diisopropyl-4-methylpyridin-3-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-one (0.070 g, 0.113 mmol, 29.7% yield) as white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.46 (d, J=2.90 Hz, 1H) 7.48-7.55 (m, 1H) 7.20-7.34 (m, 3H) 7.05 (s, 1H) 6.83 (td, J=16.74, 10.47 Hz, 1H) 6.19 (dd, J=16.69, 2.18 Hz, 1H) 5.72-5.78 (m, 1H) 4.85 (br s, 1H) 4.77 (br s, 1H) 4.42-4.52 (m, 1H) 4.09-4.19 (m, 1H) 3.80-3.93 (m, 2H) 2.96 (quin, J=6.89 Hz, 1H) 2.61-2.69 (m, 1H) 1.91 (s, 3H) 1.33 (t, J=6.95 Hz, 3H) 1.15-1.28 (m, 9H) 1.06 (d, J=6.63 Hz, 3H) 0.97 (d, J=6.63 Hz, 3H). m/z (ESI, +ve ion): 617.2 (M+H)+.
Example 176-2 (Peak 2)The racemates were separated by SFC; (Column. Chiralpak AD-H, 5 μm, 2×25 cm, F=80 mL/min, 25% Isopropanol/75%: Carbon dioxide). This afforded the separated Atropisomers as Peak 2: 4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-1-(2,6-diisopropyl-4-methylpyridin-3-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-one (0.054 g, 0.087 mmol, 22.94% yield) as white solid. 1H NMR (400 MHz, DMSO-d6) δ ppm 8.42-8.50 (m, 1H) 7.46-7.56 (m, 1H) 7.20-7.35 (m, 3H) 7.06 (s, 1H) 6.77-6.89 (m, 1H) 6.19 (dd, J=16.69, 2.18 Hz, 1H) 5.71-5.79 (m, 1H) 4.86 (br s, 1H) 4.76 (br s, 1H) 4.43-4.52 (m, 1H) 4.08-4.21 (m, 1H) 3.75-3.96 (m, 2H) 2.96 (spt, J=6.91 Hz, 1H) 2.61-2.68 (m, 1H) 1.93 (s, 3H) 1.33 (br t, J=6.22 Hz, 3H) 1.24 (dd, J=6.84, 1.04 Hz, 7H) 1.16 (br d, J=6.63 Hz, 2H) 1.02-1.08 (m, 3H) 0.94 (d, J=6.84 Hz, 3H). m/z (ESI, +ve ion): 617.2 (M+H)+.
Example 177-1 (Peak 1) 6-Chloro-4-[(2S,5R)-2,5-dimethyl-4-prop-2-enoyl-piperazin-1-yl]-7-(2-fluorophenyl)-1-(2-isopropyl-4-methyl-6-vinyl-3-pyridyl)pyrido[2,3-d]pyrimidin-2-oneTo a 50-mL round-bottomed flask was added tert-butyl (2R,5S)-4-(1-(6-bromo-2-isopropyl-4-methylpyridin-3-yl)-6-chloro-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.420 g, 0.600 mmol, Intermediate 202) and sodium carbonate (0.191 g, 1.800 mmol) in 1,4-dioxane (2.4 mL). The reaction mixture was degassed by bubbling argon (gas) into the mixture for 5 min. Then xantphos pd g3 (0.028 g, 0.030 mmol), water (0.6 mL) and vinylboronic acid pinacol ester (0.2 mL, 1.500 mmol) was added into the reaction mixture. The overall reaction mixture % as stirred and heated at 100° C. for 16 h. The reaction mixture was cooled to rt, then the mixture was diluted with sat. aq. NaHCO3 and EtOAc. The layers were separated and the aqueous layer was extracted with EtOAc. The combined organic extracts were dried over MgSO4, filtered and concentrated in vacuo. The crude material was absorbed onto a plug of silica gel and purified by chromatography through a Interchim (25 micron) silica-gel column (25 grams), eluting with a gradient of 0-30% EtOAc in CH2CL2, to provide tert-butyl (2R,5S)-4-(6-chloro-7-(2-fluorophenyl)-1-(2-isopropyl-4-methyl-6-vinylpyridin-3-yl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.290 g, 0.448 mmol, 74.7% yield) as tan solid. m/z (ESI, +ve ion): 647.2 (M+H)+.
Step 2. 4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-7-(2-fluorophenyl)-1-(2-isopropyl-4-methyl-6-vinylpyridin-3-yl)pyrido[2,3-d]pyrimidin-2(1H)-oneTo a 100-mL round-bottomed flask was added tert-butyl (2R,5S)-4-(6-chloro-7-(2-fluorophenyl)-1-(2-isopropyl-4-methyl-6-vinylpyridin-3-yl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.290 g, 0.448 mmol) and trifluoroacetic acid (0.3 mL, 4.48 mmol) in 1,2-dichloroethane (2.0 mL). The reaction mixture was stirred and heated at 60° C. for 10 min, while under an inert (N2) atmosphere. The reaction mixture was concentrated in vacuo. This material was carried directly into the next step of the synthesis, without further purification.
The previous residue was diluted with 1,2-dichloroethane (2.2 mL), then the reaction mixture was cooled to 0° C. with a wet ice bath. Then n,n′-diisopropylethylamine (0.9 mL, 5.38 mmol) was added into the reaction mixture and stirred 2 min. Then acryloyl chloride (0.4 mL, 0.448 mmol) was added into the mixture dropwise and stirred under an inert (N2) atmosphere for 10 min. The mixture was diluted with EtOAc and sat. aq. NaHCO3, then the layers were separated. The aqueous layer was extracted with EtOAc, then the combined organic extracts were dried over MgSO4, filtered and concentrated in vacuo. The crude material was absorbed onto a plug of silica gel and purified by chromatography through a Interchim (15 micron) silica-gel column (40 grams), eluting with a gradient of 0-6% MeOH/DCM. The racemates were separated by SFC; (Column, AD, 5 μm, 20×250 mm, F=70 mL/min, 20% Isopropanol/80%: Carbon dioxide). This afforded the separated Atropisomers as Peak 1: 4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-7-(2-fluorophenyl)-1-(2-isopropyl-4-methyl-6-vinylpyridin-3-yl)pyrido[2,3-d]pyrimidin-2(1H)-one (0.050 g, 0.083 mmol, 18.56% yield) as white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.47 (d, J=3.73 Hz, 1H) 7.49-7.55 (m, 1H) 7.22-7.34 (m, 4H) 6.73-6.90 (m, 2H) 6.17-6.27 (m, 2H) 5.73-5.79 (m, 1H) 5.46 (d, J=11.40 Hz, 1H) 4.87 (br s, 1H) 4.78 (br s, 1H) 4.13-4.22 (m, 1H) 3.81-3.93 (m, 2H) 2.66-2.75 (m, 1H) 1.94 (s, 3H) 1.34 (t, J=6.53 Hz, 3H) 1.26 (br d, 1=6.63 Hz, 2H) 1.19 (br d, J=6.63 Hz, 2H) 1.08 (d, J=6.63 Hz, 3H) 0.98 (d, J=6.63 Hz, 3H). m/z (ESI, +ve ion): 601.2 (M+H)+.
Example 177-2 (Peak 2)The racemates were separated by SFC; (Column. AD, 5 μm, 20×250 mm, F=70 mL/min, 20% Isopropanol/80%: Carbon dioxide). This afforded the separated Atropisomers as Peak 2: 4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-7-(2-fluorophenyl)-1-(2-isopropyl-4-methyl-6-vinylpyridin-3-yl)pyrido[2,3-d]pyrimidin-2(1H)-one (0.060 g, 0.100 mmol, 22.28% yield) as white solid. 1H NMR (500 MHz, DMSO-d6) δ ppm 8.48 (d, J=3.89 Hz, 1H) 7.49-7.54 (m, 1H) 7.23-7.33 (m, 4H) 6.73-6.88 (m, 2H) 6.21 (t, J=18.13 Hz, 2H) 5.73-5.78 (m, 1H) 5.44-5.48 (m, 1H) 4.82-4.91 (m, 1H) 4.76 (br s, 1H) 4.11-4.21 (m, 1H) 3.80-3.96 (m, 2H) 3.41-3.58 (m, 1H) 2.64-2.70 (m, 1H) 1.95 (s, 3H) 1.30-1.37 (m, 3H) 1.24 (d, J=6.75 Hz, 1H) 1.16 (d, J=6.75 Hz, 2H) 1.06 (d, J=6.75 Hz, 3H) 0.95 (d, J=6.75 Hz, 3H). m/z (ESI, +ve ion): 601.2 (M+H)+.
Example 1784-((2S,5R)-4-(4-(Dimethylamino)but-2-ynoyl)-2,5-dimethylpiperazin-1-yl)-6-fluoro-7-(2-fluorophenyl)-1-(2-isopropyl-4-methylpyridin-3-yl)pyrido[2,3-d]pyrimidin-2(1H)-one (Example 119-2, 64 mg, 0.10 mmol) in methanol (1.7 mL) was treated with Lindlar catalyst (5.6 mg, 0.021 mmol) and purged with hydrogen 4×30 psi and then allowed to stir under 30 psi hydrogen overnight. Added more Lindlar catalyst (5.6 mg, 0.021 mmol) and stirred under 35 psi for 24 h to get full conversion. The reaction mixture was filtered through a plug of celite, washed with MeOH, and concentrated to dryness on the rotavan. Purification of the crude by chromatography on silica gel using an ISCO Combiflash RF (12 g RediSep Gold column, using a gradient of 0-100% 3:1 EtOAc/EtOH in heptane, then switch to 20% MeOH in DCM, afforded 4-((2S,5R)-4-((Z)-4-(dimethylamino)but-2-enoyl)-2,5-dimethylpiperazin-1-yl)-6-fluoro-7-(2-fluorophenyl)-1-(2-isopropyl-4-methylpyridin-3-yl)pyrido[2,3-d]pyrimidin-2(1H)-one (5.5 mg, 8.9 μmol, 8.6% yield) as off-white solid. m/z (ESI, +ve ion): 616.4 (M+H)+. 1H NMR (400 MHz, CHLOROFORM-d) δ 8.52 (d, J=4.77 Hz, 1H), 7.82 (dd, J=4.46, 9.02 Hz, 1H), 7.39-7.49 (m, 1H), 7.27-7.29 (m, 1H), 7.05-7.22 (m, 3H), 4.75-5.20 (m, 2H), 4.23-4.46 (m, 1H), 4.18 (br d, J=14.31 Hz, 1H), 4.06 (br d, J=14.10 Hz, 1H), 3.83-3.99 (m, 2H), 3.74 (s, 1H), 3.50 (d, J=3.11 Hz, 2H), 2.64-2.75 (m, 1H), 2.36-2.37 (d, J=4.0 Hz, 6H), 1.48 (d, J=6.63 Hz, 3H), 1.43 (dd, J=1.45, 6.84 Hz, 3H), 1.31 (d, J=6.84 Hz, 3H), 1.24 (d, J=6.84 Hz, 3H), 1.08 (dd, J=2.07, 6.63 Hz, 3H). 19F NMR (376 MHz, CHLOROFORM-d) δ −112.45 (dd, J=19.07, 41.61 Hz, 1F), −126.70 (dd, J=28.61, 41.62 Hz, 1F).
Example 179 4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-7-(2-fluorophenyl)-1-(5-isopropyl-2,3-dimethylpyridin-4-yl)pyrido[2,3-d]pyrimidin-2(1H)-oneA 50-mL round-bottomed flask was charged with 2,5-dichloro-6-(2-fluorophenyl)nicotinamide (Intermediate 99B, 0.45 g, 1.58 mmol) and tetrahydrofuran (5 ml). Oxalyl dichloride (0.95 ml, 1.9 mmol) was added and the mixture was stirred at 65° C. for 1 h. 5-Isopropyl-2,3-dimethylpyridin-4-amine (Intermediate 189, 0.28 g, 1.7 mmol) dissolved in 2 mL of THF was then added, followed by N,N-diisopropylethylamine (0.69 ml, 3.9 mmol). The reaction mixture was stirred at rt for 30 mins and then heated at 65° C. for 30 min. The reaction mixture was partitioned between water (30 mL) and EtOAc (50 mL). The aqueous phase was extracted with EtOAc (50 mL). The combined organic phases were dried and concentrated to give a tan solid.
To the residue 2,5-dichloro-6-(2-fluorophenyl)-N-((5-isopropyl-2,3-dimethylpyridin-4-yl)carbamoyl)nicotinamide (0.73 g, 1.54 mmol, 97% yield) dissolved in THF (10 mL) was added sodium tert-butoxide (0.30 g, 3.2 mmol). The resulting suspension was stirred for 5 h then diluted with water and extracted with EtOAc (2×). The combined organic phases were dried (Na2SO4), concentrated and the residue purified by chromatography on silica gel eluting with EtOAc in heptane (30%-50%) to afford 6-chloro-7-(2-fluorophenyl)-1-(5-isopropyl-2,3-dimethylpyridin-4-yl)pyrido[2,3-d]pyrimidine-2,4(1H,3H)-dione (0.16 g, 0.36 mmol, 23% yield) as white solid. m/z (ESI, +ve ion): 439.1 (M+H)+.
Steps 3&4. tert-Butyl (2R,5S)-4-(6-chloro-7-(2-fluorophenyl)-1-(5-isopropyl-2,3-dimethylpyridin-4-yl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylatePhosphoryl trichloride (40 ul, 0.43 mmol) was added dropwise to a solution of 6-chloro-7-(2-fluorophenyl)-1-(5-isopropyl-2,3-dimethylpyridin-4-yl)pyrido[2,3-d]pyrimidine-2,4(1H,3H)-dione (0.16 g, 0.36 mmol) and N-ethyl-N-isopropylpropan-2-amine (0.087 ml, 0.50 mmol) in CH3CN (1.2 mL) under N2. This mixture was then heated to 80° C. for 1 h. Added more POCl3 (10 uL, 0.1 mmol, 0.3 eq) and stirred at 80° C. for another hour. The reaction mixture was cooled to 0° C. and N-ethyl-N-isopropylpropan-2-amine (0.17 ml, 1.0 mmol) was added followed by tert-butyl (2R,5S)-2,5-dimethylpiperazine-1-carboxylate (Astatech, 0.084 g, 0.39 mmol). This mixture was stirred at rt over 30 min. and then was poured into cold saturated NaHCO3 solution and stirred vigorously for 10 min. The mixture was extracted with EtOAc, the combined organics were dried over Na2SO4, filtered, concentrated and purified by chromatography on silica gel using 0-40% 3:1 EtOAc/EtOH in heptane to afford tert-butyl (2R,5S)-4-(6-chloro-7-(2-fluorophenyl)-1-(5-isopropyl-2,3-dimethylpyridin-4-yl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.125 g, 0.197 mmol, 55.0% yield) as light-yellow solid. m/z (ESI, +ve ion): 635.2 (M+H)+.
Step 5&6. 6-Chloro-4-[(2S,5R)-2,5-dimethyl-4-prop-2-enoyl-piperazin-1-yl]-7-(2-fluorophenyl)-1-(5-isopropyl-2,3-dimethyl-4-pyridyl)pyrido[2,3-d]pyrimidin-2-oneTo tert-butyl (2R,5S)-4-(6-chloro-7-(2-fluorophenyl)-1-(5-isopropyl-2,3-dimethylpyridin-4-yl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (125 mg, 0.197 mmol) dissolved in dichloromethane (1 ml) was added trifluoroacetic acid (0.33 ml, 4.4 mmol). The reaction mixture was stirred at RT for 1 h then concentrated in vacuo and the residue was re-dissolved in dichloromethane (1 mL) and 1,1′-dimethyltriethylamine (0.10 ml, 0.59 mmol) was added followed by dropwise addition of acryloyl chloride (0.018 ml, 0.22 mmol) at 0° C. The reaction was stirred at 0° C. for 30 min. The reaction mixture was purified by chromatography on silica gel using a RediSep Gold (24 g Gold) column. eluting with a gradient of 0% to 50% 3:1 EtOAc/EtOH in hetane, to give 4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-7-(2-fluorophenyl)-1-(5-isopropyl-2,3-dimethylpyridin-4-yl)pyrido[2,3-d]pyrimidin-2(1H)-one (54 mg, 0.046 mmol, 46% yield) as white solid. m/z (ESI, +ve ion): 589.1 (M+H)+.
Example 179-1SFC conditions: Sample from above was purified via preparative SFC using an (R,R) Whelk-01 (250×21 mm, 5u) column, a mobile phase of 30% MeOH/CO2 at 100 bar and at a flowrate of 80 g/min to generate 18 mg of peak 1 with an ce of >99% (chemical purity 99.74%) and 9 mg of peak 2 with an ee of 99.34% (chemical purity 99.61%).
6-Chloro-4-[(2S,5R)-2,5-dimethyl-4-prop-2-enoyl-piperazin-1-yl]-7-(2-fluorophenyl)-1-(5-isopropyl-2,3-dimethyl-4-pyridyl)pyrido[2,3-d]pyrimidin-2-one (3380251, M Isomer)1H NMR (400 MHz, CHLOROFORM-d) δ 8.42 (s, 1H), 8.10 (s, 1H), 7.36-7.49 (m, 1H), 7.07-7.19 (m, 3H), 6.51-6.73 (m, 1H), 6.40 (br t, J=14.82 Hz, 1H), 5.75-5.87 (m, 1H), 4.87-5.24 (m, 2H), 4.22-4.54 (m, 1H), 3.80-4.10 (m, 2H), 3.72 (br d, J=13.89 Hz, 1H), 3.45-3.77 (m, 1H), 3.43-3.56 (m, 1H), 2.52 (s, 3H), 1.89-1.99 (m, 3H), 1.40-1.48 (m, 3H), 1.32 (br d, J=6.84 Hz, 3H), 1.22 (d, J=6.84 Hz, 3H), 1.08 (d, J=6.84 Hz, 3H). 19F NMR (376 MHz, CHLOROFORM-d) δ −112.70-112.47 (m, 1F). m/z (ESI, +ve ion): 589.1 (M+H)+.
Example 179-2 6-Chloro-4-[(2S,5R)-2,5-dimethyl-4-prop-2-enoyl-piperazin-1-yl]-7-(2-fluorophenyl)-1-(5-isopropyl-2,3-dimethyl-4-pyridyl)pyrido[2,3-d]pyrimidin-2-one (3380252, P Isomer)1H NMR (400 MHz, CHLOROFORM-d) δ 8.40 (s, 1H), 8.04-8.13 (m, 1H), 7.37-7.47 (m, 1H), 7.05-7.20 (m, 3H), 6.48-6.73 (M, 1H), 6.40 (br t, J=15.03 Hz, 1H), 5.73-5.88 (m, 1H), 4.84-5.26 (m, 2H), 4.21-4.56 (m, 1H), 3.40-4.11 (m, 3H), 2.53 (s, 3H), 1.88-1.98 (m, 3H), 1.38-1.50 (m, 3H), 1.30 (br d, J=6.84 Hz, 3H), 1.21 (d, J=6.84 Hz, 3H), 1.04 (d, J=6.84 Hz, 3H). 19F NMR (376 MHz, CHLOROFORM-d) δ −112.75-−112.67 (m, 1F). m/z (ESI, +ve ion): 589.1 (M+H)+.
Example 180To a solution of 4-(4-acryloylpiperazin-1-yl)-6-chloro-7-(2-fluorophenyl)-1-(2-methoxy-2-methylpropyl)pyrido[2,3-d]pyrimidin-2(1H)-one (24 mg, 0.048 mmol) in 1,1-dichloroethane (240 μl) was added boron tribromide, 1.0 m solution in methylene chloride (53 μl, 0.053 mmol) at 0° C. The reaction mixture was stirred at 0° C. for 15 min (no change), then heated to 60° C. and stirred for 5 h. The crude product was purified by ISCO chromatography through a Redi-Sep pre-packed silica gel column (column size: 24 g, flow rate: 20 mL/min, eluent: 0-80% 3:1 EtOAc/EtOH in heptane for 35 min) to give 4-(4-acryloylpiperazin-1-yl)-6-chloro-7-(2-fluorophenyl)-1-(2-hydroxy-2-methylpropyl)pyrido[2,3-d]pyrimidin-2(1H)-one (5.8 mg, 0.012 mmol, 25% yield) as off-white solid. m/z (ESI, +ve ion): 486.2 (M+H)+. 1H NMR (400 MHz, CHLOROFORM-d) δ 8.07 (s, 1H), 7.43-7.56 (m, 2H), 7.26-7.35 (m, 2H), 6.57 (dd, J=10.57, 16.59 Hz, 1H), 6.36 (dd, J=1.66, 16.79 Hz, 1H), 5.77 (dd, J=1.87. 10.57 Hz, 1H), 4.51 (s, 2H), 3.92-3.98 (m, 4H), 3.59-3.70 (m, 1H), 3.02-3.12 (m, 1H), 1.40 (d, J=6.84 Hz, 6H), 1.24 (s, 6H). 19F NMR (376 MHz, CHLOROFORM-d) δ −112.83 (s, 1F).
Example 181 1-(4-(3-Chloro-2-(2-fluorophenyl)-8-(2-isopropylphenyl)-7-(morpholinomethyl)-1,6-naphthyridin-5-yl)piperazin-1-yl)prop-2-en-1-oneA mixture of methyl 3,5-dichloro-2-(2-fluorophenyl)-7-(methoxymethyl)-1,6-naphthyridine-8-carboxylate (1.50 g, 3.80 mmol, Intermediate 85A), tert-butyl piperazine-1-carboxylate (2.83 g, 15.18 mmol, Aldrich), potassium carbonate (10.49 g, 76 mmol, Aldrich) and sodium sulfate (10.78 g, 76 mmol) in CH3CN (30 mL) was heated at 85 C for 2 h. The reaction went to completion, brought to rt, washed with water and extracted with EtOAc. The combined organics were dried over Na2SO4, filtered, concentrated and purified by chromatography on silica gel using 0-50% EtOAc in heptane to afford methyl 5-(4-(tert-butoxycarbonyl)piperazin-1-yl)-3-chloro-2-(2-fluorophenyl)-7-(methoxymethyl)-1,6-naphthyridine-8-carboxylate (1.09 g, 2.000 mmol, 52.7% yield) as a yellow solid. m/z (ESI, +ve ion): 545.2 (M+H)+.
Step 2. tert-Butyl 4-(8-bromo-3-chloro-2-(2-fluorophenyl)-7-(methoxymethyl)-1,6-naphthyridin-5-yl)piperazine-1-carboxylateTo a solution of methyl 5-(4-(tert-butoxycarbonyl)piperazin-1-yl)-3-chloro-2-(2-fluorophenyl)-7-(methoxymethyl)-1,6-naphthyridine-8-carboxylate (1.09 g, 2.000 mmol) in EtOH (15 mL) was added KOH (2.469 g, 44.0 mmol, Aldrich) and the resulting mixture was heated at 85 C for 20 min. The reaction went to completion and concentrated to afford 5-(4-(tert-butoxycarbonyl)piperazin-1-yl)-3-chloro-2-(2-fluorophenyl)-7-(methoxymethyl)-1,6-naphthyridine-8-carboxylic acid to be used as is. m/z (ESI, +ve ion): 531.2 (M+H)+.
To 5-(4-(tert-butoxycarbonyl)piperazin-1-yl)-3-chloro-2-(2-fluorophenyl)-7-(methoxymethyl)-1,6-naphthyridine-8-carboxylic acid was added CH3CH (30 mL) and water (15 mL) followed by the addition of LiOH (6.56 g, 274 mmol, Aldrich) and NBS (7.12 g, 40.0 mmol, Aldrich) at rt and the resulting mixture was stirred for 7 min. The reaction went to completion, washed with sat. NaHCO3 and extracted with DCM. The combined organics were dried over Na2SO4, filtered, concentrated and purified by chromatography on silica gel using 0-50% EtOAc in heptane to afford tert-butyl 4-(8-bromo-3-chloro-2-(2-fluorophenyl)-7-(methoxymethyl)-1,6-naphthyridin-5-yl)piperazine-1-carboxylate (1.0 g, 1.767 mmol, 88% yield) as a yellow solid. m/z (ESI, +ve ion): 567.2 (M+H)+.
Step 3. tert-Butyl 4-(3-chloro-2-(2-fluorophenyl)-8-(2-isopropylphenyl)-7-(methoxymethyl)-1,6-naphthyridin-5-yl)piperazine-1-carboxylateA mixture of tert-butyl 4-(8-bromo-3-chloro-2-(2-fluorophenyl)-7-(methoxymethyl)-1,6-naphthyridin-5-yl)piperazine-1-carboxylate (1.0 g, 1.767 mmol), cesium carbonate (2.303 g, 7.07 mmol, Aldrich), (1,1′-bis(diphenylphosphino) ferrocene) dichloropalladium (0.078 ml, 0.106 mmol, Aldrich) and [2-(1-methylethyl)phenyl]-boronic acid (0.870 ml, 5.30 mmol, Combi-Blocks) was purged with N2 followed by the addition of 1,4-dioxane/water (4/0.4 mL) and the resulting mixture was heated at 85 C for 1 h. The reaction went to completion, brought to rt, washed with sat. NaHCO3 and extracted with EtOAC. The combined organics were purified on silica gel using 0-50% EtOAc in heptane to afford tert-butyl 4-(3-chloro-2-(2-fluorophenyl)-8-(2-isopropylphenyl)-7-(methoxymethyl)-1,6-naphthyridin-5-yl)piperazine-1-carboxylate (0.701 g, 1.158 mmol, 65.5% yield) as a yellow-greenish oil. m/z (ESI, +ve ion): 604.6 (M+H)+.
Step 4. (3-Chloro-2-(2-fluorophenyl)-8-(2-isopropylphenyl)-5-(piperazin-1-yl)-1,6-naphthyridin-7-yl)methanolTo a solution of tert-butyl 4-(3-chloro-2-(2-fluorophenyl)-8-(2-isopropylphenyl)-7-(methoxymethyl)-1,6-naphthyridin-5-yl)piperazine-1-carboxylate (0.701 g, 1.158 mmol) in DCM (20 mL) at OC was added bbr3 (5.79 ml, 5.79 mmol, Aldrich) dropwise. After complete addition, the ice bath was removed and the resulting suspension was stirred at rt for 2 h. The reaction was brought to OC, carefully basified with sat. NaHCO3 and extracted with DCM. The combined organics were purified on silica gel using 0-10% MeOH in DCM to afford (3-chloro-2-(2-fluorophenyl)-8-(2-isopropylphenyl)-5-(piperazin-1-yl)-1,6-naphthyridin-7-yl)methanol (0.23 g, 0.468 mmol, 40.4% yield) as a yellow solid. m/z (ESI, +ve ion): 490.6 (M+H)+.
Step 5. 3-Chloro-2-(2-fluorophenyl)-8-(2-isopropylphenyl)-5-(piperazin-1-yl)-1,6-naphthyridine-7-carbaldehydeTo a suspension of (3-chloro-2-(2-fluorophenyl)-8-(2-isopropylphenyl)-5-(piperazin-1-yl)-1,6-naphthyridin-7-yl)methanol (0.23 g, 0.468 mmol, 40.4% yield) in DCM (20 mL) was added Dess-martinperiodinane (0.737 g, 1.738 mmol, Aldrich) and the resulting mixture was stirred at rt for 2 h. The reaction went to completion, washed with sat. NaHCO3, extracted with DCM and concentrated to afford 3-chloro-2-(2-fluorophenyl)-8-(2-isopropylphenyl)-5-(piperazin-1-yl)-1,6-naphthyridine-7-carbaldehyde as a yellow solid to be used as is. m/z (ESI, +ve ion): 488.6 (M+H)+.
Step 6. 1-(4-(3-Chloro-2-(2-fluorophenyl)-8-(2-isopropylphenyl)-7-(morpholinomethyl)-1,6-naphthyridin-5-yl)piperazin-1-yl)prop-2-en-1-oneTo a solution of 3-chloro-2-(2-fluorophenyl)-8-(2-isopropylphenyl)-5-(piperazin-1-yl)-1,6-naphthyridine-7-carbaldehyde (0.22 g, 0.450 mmol) in chloroform (15 mL) were added morpholine (0.078 ml, 0.900 mmol, Aldrich) and acetic acid (0.026 ml, 0.450 mmol, Aldrich) and the resulting mixture was stirred at rt for 10 min then sodium triacetoxyborohydride (0.381 g, 1.800 mmol, Aldrich) was added and the stirring continued for 1 h more. The reaction went to completion, brought to OC and carefully basified with sat. NaHCO3. The mixture was extracted with DCM, dried over Na2SO4, filtered and concentrated and purified by chromatography to afford 4-((3-chloro-2-(2-fluorophenyl)-8-(2-isopropylphenyl)-5-(piperazin-1-yl)-1,6-naphthyridin-7-yl)methyl)morpholine (0.050 g, 0.089 mmol, 19.84% yield) as a light solid. m/z (ESI, +ve ion): 560 (M+H)+.
4-((3-chloro-2-(2-fluorophenyl)-8-(2-isopropylphenyl)-5-(piperazin-1-yl)-1,6-naphthyridin-7-yl)methyl)morpholine (0.050 g, 0.089 mmol, 19.84% yield) was dissolved in DCM (5 mL) followed by the addition of acryloyl chloride (8.94 μl, 0.110 mmol, Aldrich) and the resulting mixture was stirred at rt for 30 min. The reaction went to completion, washed with sat. NaHCO3, extracted with DCM and purified by chromatography on silica gel using 0-10% MeOH in DCM to afford 1-(4-(3-chloro-2-(2-fluorophenyl)-8-(2-isopropylphenyl)-7-(morpholinomethyl)-1,6-naphthyridin-5-yl)piperazin-1-yl)prop-2-en-1-one (0.039 g, 0.064 mmol, 14.11% yield) as a yellow solid. m/z (ESI, +ve ion): 613.6 (M+H)+. 1H NMR (CHLOROFORM-d) δ: 8.38-8.45 (m, 1H), 7.31-7.47 (m, 4H), 7.01-7.19 (m, 4H), 6.62-6.76 (m, 1H), 6.33-6.44 (m, 1H), 5.72-5.83 (m, 1H), 3.84-4.08 (m, 7H), 3.62-3.74 (m, 4H), 3.50-3.60 (m, 3H), 3.38-3.47 (m, 1H), 2.38-2.66 (m, 4H), 1.04-1.12 (m, 3H), 0.93-0.99 (m, 3H).
Example 182 4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-1-(6-(azetidin-1-yl)-2,4-diisopropylpyridin-3-yl)-6-chloro-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-oneTo a solution of 6-bromo-2,4-diisopropylpyridin-3-amine (0.217 g, 0.844 mmol, Intermediate 196) and DIEA (0.309 ml, 1.772 mmol, Aldrich) in THF (10 mL) at rt was added dropwise phosgene solution, 15% in toluene (0.662 ml, 0.928 mmol, Aldrich) and the resulting mixture was stirred at rt for 10 min then the mixture was brought to 0 C and solid tert-butyl (2R,5S)-4-((2,5-dichloro-64-(2-fluorophenyl)pyridin-3-yl)(imino)methyl)-2,5-dimethylpiperazine-1-carboxylate (0.487 g, 1.013 mmol, Intermediate 165) was added in three portions. The ice-bath was removed and after stirring for 15 min at rt tert-butyl (2R,5S)-4-((((6-bromo-2,4-diisopropylpyridin-3-yl)carbamoyl)imino)(2,5-dichloro-6-(2-fluorophenyl)pyridin-3-yl)methyl)-2,5-dimethylpiperazine-1-carboxylate was observed. m/z (ESI, +ve ion): 764.4 (M+H)+.
Step 2. tert-Butyl (2R,5S)-4-(1-(6-bromo-2,4-diisopropylpyridin-3-yl)-6-chloro-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylateThen sodium tert-butoxide (0.243 g, 2.53 mmol, Aldrich) was added and the resulting mixture was stirred at rt for 20 min. The reaction went to completion, washed with water, extracted with EtOAc and purified by chromatography on silica gel using 0-40% EtOAc in heptane to afford tert-butyl (2R,5S)-4-(1-(6-bromo-2,4-diisopropylpyridin-3-yl)-6-chloro-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.213 g, 0.293 mmol, 34.7% yield) as a light yellow solid. m/z (ESI, +ve ion): 728.4 (M+H)+.
Step 3. tert-Butyl (2R,5S)-4-(1-(6-(azetidin-1-yl)-2,4-diisopropylpyridin-3-yl)-6-chloro-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylateA mixture of tert-butyl (2R,5S)-4-(1-(6-bromo-2,4-diisopopylpyridin-3-yl)-6-chloro-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.085 g, 0.117 mmol), 1,1′-bis(diphenylphosphino)ferrocene (5.18 mg, 9.34 μmol, Strem), palladium (ii) acetate (1.048 mg, 4.67 μmol. Strem) and sodium tert-butoxide (0.017 g, 0.175 mmol, Aldrich) was purged with N2 followed by the addition of azetidine (7.33 μl, 0.128 mmol, Combi-Blocks) and toluene (4 mL). The resulting mixture was heated at 90 C for 17 h. The starting material was consumed and desired mass was observed with other peaks. The reaction was brought to rt, quenched with sat. NaHCO3 and extracted with EtOAc. The combined organics were purified by HPLC to afford tert-butyl (2R,5S)-4-(1-(6-(azetidin-1-yl)-2,4-diisopropylpyridin-3-yl)-6-chloro-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.035 g, 0.050 mmol, 42.6% yield) as a light yellow solid. m/z (ESI, +ve ion): 703.4 (M+H)+.
Step 4. 4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-1-(6-(azetidin-1-yl)-2,4-diisopropylpyridin-3-yl)-6-chloro-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-oneTo a solution of tert-butyl (2R,5S)-4-(1-(6-(azetidin-1-yl)-2,4-diisopropylpyridin-3-yl)-6-chloro-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.035 g, 0.050 mmol) in DCM (3 mL) was added tfa (2.0 mL, 26.0 mmol) and the resulting mixture was stirred at rt for 30 min. The reaction went to completion, concentrated and used as is in the next step. 1-(6-(azetidin-1-yl)-2,4-diisopropylpyridin-3-yl)-6-chloro-4-((2S,5R)-2,5-dimethylpiperazin-1-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-one. m/z (ESI, +ve ion): 603.4 (M+H)+.
1-(6-(azetidin-1-yl)-2,4-diisopropylpyridin-3-yl)-6-chloro-4-((2S,5R)-2,5-dimethylpiperazin-1-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-one was dissolved in DCM (3 mL) then acryloyl chloride (4.04 μl, 0.050 mmol, Aldrich) was added at rt. The reaction was stirred at rt for 15 min, washed with sat. NaHCO3 and extracted with DCM. The combined organics were purified by chromatography on silica gel using 0-5% MeOH in DCM to afford 4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-1-(6-(azetidin-1-yl)-2,4-diisopropylpyridin-3-yl)-6-chloro-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(H)-one as a light yellow solid. m/z (ESI, +ve ion): 657.4 (M+H)+. 1H NMR (400 MHz, DMSO-d6) δ 7.94-8.04 (m, 1H), 7.69-7.78 (m, 1H), 7.38-7.48 (m, 1H), 7.20-7.28 (m, 2H), 7.11-7.19 (m, 1H), 6.97-7.11 (m, 1H), 6.16 (br d, J=16.8 Hz, 1H), 5.71-5.75 (m, 1H), 4.64-5.00 (m, 1H), 4.17-4.38 (m, 1H), 3.79-3.93 (m, 1H), 3.57-3.75 (m, 2H), 3.40-3.55 (m, 1H), 3.14-3.28 (m, 2H), 2.96-3.15 (m, 2H), 1.24 (br dd, J=10.9, 6.7 Hz, 6H), 1.16 (br s, 5H), 1.02-1.11 (m, 4H), 0.89-1.00 (m, 7H).
The racemic mixture was separated under the following conditions: SFC. IE (5 um, 21×250 mm two in series, total 50 cm) F=65 ml, 35%; ethanol, 65% carbon dioxide, Back pressure=90 bar.
Example 182-1 4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-1-(6-(azetidin-1-yl)-2,4-diisopropylpyridin-3-yl)-6-chloro-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-onem/z (ESI, +ve ion): 657.6 (M+H)+
1H NMR (400 MHz, DMSO-d6) δ 8.44 (s, 1H), 7.48-7.58 (m, 1H), 7.26-7.38 (m, 2H), 7.16-7.24 (m, 1H), 6.75-6.90 (m, 1H), 6.19 (dd, J=16.6, 2.3 Hz, 1H), 6.10 (s, 1H), 5.71-5.80 (m, 1H), 4.72-4.94 (m, 2H), 4.50 (br d, J=2.7 Hz, 1H), 4.08-4.19 (m, 1H), 3.89-3.99 (m, 4H), 3.83-3.88 (m, 1H), 2.26-2.33 (m, 2H), 1.29-1.36 (m, 3H), 1.22-1.27 (m, 4H), 1.00-1.07 (m, 7H), 0.88 (dd, J=6.4, 4.8 Hz, 7H).
Example 182-2 4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-1-(6-(azetidin-1-yl)-2,4-diisopropylpyridin-3-yl)-6-chloro-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-onem/z (ESI, +ve ion): 657.6 (M+H)+
1H NMR (400 MHz, DMSO-d6) δ 8.45 (s, 1H), 7.49-7.57 (m, 1H), 7.28-7.38 (m, 2H), 7.17-7.25 (m, 1H), 6.76-6.92 (m, 1H), 6.19 (dd, J=16.7, 2.2 Hz, 1H), 6.11 (s, 1H), 5.72-5.79 (m, 1H), 4.70-4.91 (m, 2H), 4.41-4.51 (m, 1H), 4.08-4.18 (m, 1H), 3.89-3.99 (m, 4H), 3.82-3.88 (m, 1H), 2.24-2.32 (m, 2H), 1.28-1.35 (m, 3H), 1.25 (s, 4H), 0.99-1.07 (m, 7H), 0.91 (d, J=6.8 Hz, 3H), 0.86 (br d, J=6.6 Hz, 4H).
Example 183-1 (S)-4-(4-Acryloyl-2-methylpiperazin-1-yl)-1-(6-amino-2-isopropyl-4-methylpyridin-3-yl)-6-chloro-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-one (First Eluting Compound) Example 183-2 (S)-4-(4-Acryloyl-2-methylpiperazin-1-yl)-1-(6-amino-2-isopropyl-4-methylpyridin-3-yl)-6-chloro-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-one (Second Eluting Compound)To a solution of 2,5,6-trichloronicotinamide (187 mg, 0.831 mmol, intermediate P) in 1,2-dichlomethane (10 mL) under N2 was added. oxalyl chloride, 2.0 M solution in methylene chloride (0.457 mL, 0.914 mmol). The resulting mixture was then stirred at 80° C. for 1 hour. Then, the mixture was cooled to room temperature and a solution of 6-isopropyl-N2,N2-bis(4-methoxybenzyl)-4-methylpyridine-2,5-diamine (337 mg, 0.831 mmol, intermediate I-33) in MeCN (5 mL) was added. The resulting mixture was then stirred at room temperature for 1 hour. Then, the mixture was quenched with saturated NH4Cl (5 mL) and was then diluted with saturated NaHCO3 (25 mL). The mixture was then extracted with EtOAc (2×100 mL). The combined organic extracts were then dried over MgSO4 and concentrated under reduced pressure. Chromatographic purification of the residue (silica gel, 0%-100% EtOAc:EtOH (3:1)/heptane) provided N-((6-(bis(4-methoxybenzyl)amino)-2-isopropyl-4-methylpyridin-3-yl)carbamoyl)-2,5,6-trichloronicotinamide as a yellow solid which was used in the next step without purification requirement. m/z (ESI, +ve ion) 656.0 (M+H)+.
Step 2: 1-(6-(Bis(4-methoxybenzyl)amino)-2-isopropyl-4-methylpyridin-3-yl)-6,7-dichloropyrido[2,3-d]pyrimidine-2,4(1H,3H)-dioneTo a solution of N-((6-(bis(4-methoxybenzyl)amino)-2-isopropyl-4-methylpyridin-3-yl)carbamoyl)-2,5,6-trichloronicotinamide (546 mg, 0.831 mmol) in tetrahydrofuran (15 mL) at 0° C. under N2 was added potassium bis(trimethylsilyl)amide, 1M solution in tetrahydrofuran (1.66 mL, 1.66 mmol) dropwise. After addition, the mixture was then stirred at 0° C. for 30 mins. Then, the mixture was quenched with saturated NH4Cl (5 mL) and was then diluted with saturated NaHCO3 (16 mL). The mixture was then extracted with EtOAc (2×100 mL). The combined organic extracts were then dried over MgSO4 and concentrated under reduced pressure. Chromatographic purification of the residue (silica gel, 0%-100% EtOAc:EtOH (3:1)/heptane) provided 1-(6-(bis(4-methoxybenzyl)amino)-2-isopropyl-4-methylpyridin-3-yl)-6,7-dichloropyrido[2,3-d]pyrimidine-2,4(1H,3H)-dione (476 mg, 0.767 mmol, 92% yield) as a yellow solid. m/z (ESI, +ve ion) 620.0 (M+H)
Step 3: tert-Butyl (S)-4-(1-(6-(bis(4-methoxybenzyl)amino)-2-isopropyl-4-methylpyridin-3-yl)-6,7-dichloro-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-3-methylpiperazine-1-carboxylateTo a solution of 1-(6-(bis(4-methoxybenzyl)amino)-2-isopropyl-4-methylpyridin-3-yl)-6,7-dichloropyrido[2,3-d]pyrimidine-2,4(1H,3H)-dione (471 mg, 0.759 mmol) in acetonitrile (8 mL) was added 1,1′-dimethyltriethylamine (0.464 mL, 2.66 mmol) and phosphorus oxide chloride (0.177 mL, 1.90 mmol). The resulting mixture was then stirred at 70° C. under N2 for 30 mins. Then, the mixture was cooled to room temperature and a solution of (3s)-1-(tert-butoxycarbonyl)-3-methylpiperazine (0.304 mL, 1.52 mmol, Ark Pharm, Inc., Arlington Heights, IL, USA) and 1,1′-dimethyltriethylamine (0.464 mL, 2.66 mmol) in MeCN (4 mL) was added. The resulting mixture was then stirred at room temperature under N2 for 30 mins. The mixture was then diluted with water (20 mL) and was then extracted with EtOAc (2×50 mL). The combined organic extracts were then dried over MgSO4 and concentrated under reduced pressure. Chromatographic purification of the residue (silica gel, 0%-80% EtOAc:EtOH (3:1)/heptane) provided tert-butyl (S)-4-(1-(6-(bis(4-methoxybenzyl)amino)-2-isopropyl-4-methylpyridin-3-yl)-6,7-dichloro-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-3-methylpiperazine-1-carboxylate as a yellow solid which was used in the next step without purification requirement. m/z (ESI, +ve ion) 746.0 (M+H)+.
Step 4: tert-Butyl (S)-4-(1-(6-(bis(4-methoxybenzyl)amino)-2-isopropyl-4-methylpyridin-3-yl)-6-chloro-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-3-methylpiperazine-1-carboxylateTo a solution of tert-butyl (S)-4-(1-(6-(bis(4-methoxybenzyl)amino)-2-isopropyl-4-methylpyridin-3-yl)-6,7-dichloro-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-3-methylpiperazine-1-carboxylate (609 mg, 0.759 mmol) in 1,4-dioxane (7 mL) was added (2-fluorophenyl)boranediol (0.212 mL, 1.52 mmol, Combi-Blocks Inc., San Diego, CA, USA), (1,1′-bis(diphenylphosphino) ferrocene) dichloropalladium (0.056 mL, 0.076 mmol), and potassium acetate (0.237 mL, 3.79 mmol). The resulting mixture was then stirred at 80° C. under N2 for 1 hour. Then, the mixture was diluted with saturated NaHCO3 (10 mL) and was then extracted with EtOAc (2×50 mL). The combined organic extracts were then dried over MgSO4 and concentrated under reduced pressure. Chromatographic purification of the residue (silica gel, 0%-100% EtOAc:EtOH (3:1)/heptane) provided tert-butyl (S)-4-(1-(6-(bis(4-methoxybenzyl)amino)-2-isopropyl-4-methylpyridin-3-yl)-6-chloro-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-3-methylpiperazine-1-carboxylate (654 mg, 0.758 mmol, 100% yield) as a yellow solid. m/z (ESI, +ve ion) 862.2 (M+H)+.
Step 5: (S)-4-(4-Acryloyl-2-methylpiperazin-1-yl)-1-(6-amino-2-isopropyl-4-methylpyridin-3-yl)-6-chloro-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-one Step 5-1: (S)-1-(6-(Bis(4-methoxybenzyl)amino)-2-isopropyl-4-methylpyridin-3-yl)-6-chloro-7-(2-fluorophenyl)-4-(2-methylpiperazin-1-yl)pyrido[2,3-d]pyrimidin-2(1H)-one trifluoracetic acidTo a solution of tert-butyl (S)-4-(1-(6-(bis(4-methoxybenzyl)amino)-2-isopropyl-4-methylpyridin-3-yl)-6-chloro-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-3-methylpiperazine-1-carboxylate (654 mg, 0.758 mmol) in dichloromethane (5 mL) was added trifluoroacetic acid (1.130 mL, 15.17 mmol). The resulting mixture was then stirred at room temperature for 1 hour. Then, the mixture was concentrated and dried in vacuo provided (S)-1-(6-(bis(4-methoxybenzyl)amino)-2-isopropyl-4-methylpyridin-3-yl)-6-chloro-7-(2-fluorophenyl)-4-(2-methylpiperazin-1-yl)pyrido[2,3-d]pyrimidin-2(H)-one trifluoroacetic acid which was used in the next step without purification requirement. m/z (ESI, +ve ion) 762.2 (M+H)+.
Step 5-2: (S)-4-(4-Acryloyl-2-methylpiperazin-1-yl)-1-(6-(bis(4-methoxybenzyl)amino)-2-isopropyl-4-methylpyridin-3-yl)-6-chloro-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-oneTo a solution of (S)-1-(6-(bis(4-methoxybenzyl)amino)-2-isopropyl-4-methylpyridin-3-yl)-6-chloro-7-(2-fluorophenyl)-4-(2-methylpiperazin-1-yl)pyrido[2,3-d]pyrimidin-2(1H)-one trifluoroacetic acid in dichloromethane (7 mL) at 0° C. under N2 was added potassium carbonate (0.230 mL, 3.79 mmol), 1,1′-dimethyltriethylamine (1.986 mL, 11.37 mmol), and a solution of 2-propenoyl chloride (0.062 mL, 0.758 mmol) in DCM (0.3 mL). The resulting mixture was then stirred at 0° C. for 15 mins. The mixture was then quenched with saturated NaHCO3 (10 mL) and was then extracted with EtOAc (2×30 mL). The combined organic extracts were then dried over MgSO4 and concentrated under reduced pressure. Chromatographic purification of the residue (silica gel, 0%-100% EtOAc:EtOH (3:1)/heptane) provided (S)-4-(4-acryloyl-2-methylpiperazin-1-yl)-1-(6-(bis(4-methoxybenzyl)amino)-2-isopropyl-4-methylpyridin-3-yl)-6-chloro-7-(2-fluorophenyl)pyrido[2,3<d]pyrimidin-2(1H)-one which was used in the next step without purification requirement. m/z (ESI, +ve ion) 816.5 (M+H)+.
Step 5-3: (S)-4-(4-Acryloyl-2-methylpiperazin-1-yl)-1-(6-amino-2-isopropyl-4-methylpyridin-3-yl)-6-chloro-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-oneA solution of (S)-4-(4-acryloyl-2-methylpiperazin-1-yl)-1-(6-(bis(4-methoxybenzyl)amino)-2-isopropyl-4-methylpyridin-3-yl)-6-chloro-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-one (568 mg, 0.696 mmol) in trifluoroacetic acid (3.6 mL, 48.7 mmol) was subjected to a microwave irradiation at 100° C. for 10 mins. Then, the mixture was concentrated under reduced pressure. Then, the residue was dissolved in DCM (20 mL) and saturated NaHCO3 (50 mL) was added slowly at 0° C. After addition, the mixture was then stirred at room temperature for 5 mins. The organic layer was collected, dried over MgSO4. and concentrated under reduced pressure. Chromatographic purification of the residue (silica gel, 0%-10% NH3 2M in MeOH/DCM) provided (S)-4-(4-acryloyl-2-methylpiperazin-1-yl)-1-(6-amino-2-isopropyl-4-methylpyridin-3-yl)-6-chloro-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-one (165 mg, 0.143 mmol, 41.2% yield) as a yellow solid. m/z (ESI, +ve ion) 576.0 (M+H)+. 1H NMR (DMSO-d6) δ: 8.40 (br s, 1H), 7.48-7.60 (m, 1H), 7.22-7.36 (m, 3H), 6.78-6.93 (m, 1H), 6.15-6.25 (m, 2H), 5.70-5.84 (m, 3H), 4.79-5.03 (m, 1H), 4.22-4.49 (m, 2H), 3.96-4.19 (m, 1H), 3.40-3.83 (m, 2H), 3.01-3.29 (m, 2H), 1.73 (s, 3H), 1.29-1.35 (m, 3H), 0.99 (d, J=6.8 Hz, 3H), 0.86-0.89 (m, 3H).
Step 6: (S)-4-(4-Acryloyl-2-methylpiperazin-1-yl)-1-(6-amino-2-isopropyl-4-methylpyridin-3-yl)-6-chloro-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-one (First Eluting Atropisomer, 3371969) and (S)-4-(4-acryloyl-2-methylpiperazin-1-yl)-1-(6-amino-2-isopropyl-4-methylpyridin-3-yl)-6-chloro-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-one (Second Eluting Atropisomer)An atropisomeric mixture of (S)-4-(4-acryloyl-2-methylpiperazin-1-yl)-1-(6-amino-2-isopropyl-4-methylpyridin-3-yl)-6-chloro-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-one (155 mg) was separated by preparative Thar 200 SFC method, column: AS (150×30 mm, 5u), mobile phase: 80:20 (A:B) with A: Liquid CO2 and B: methanol (NH3), flow rate: 180 g/min; column/oven temp.: ambient temperature provided (S)-4-(4-acryloyl-2-methylpiperazin-1-yl)-1-(6-amino-2-isopropyl-4-methylpyridin-3-yl)-6-chloro-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-one (61 mgs, first eluting atropisomer, 3371969) as a yellow solid. m/z (ESI, +ve ion) 576.0 (M+H)+. 1H NMR (DMSO-d6) δ : 8.41 (br d, J=3.7 Hz, 1H), 7.48-7.58 (m, 1H), 7.21-7.36 (m, 3H), 6.78-6.94 (m, 1H), 6.16-6.25 (m, 2H), 5.76-5.80 (m, 2H), 5.73-5.76 (m, 1H), 4.83-5.00 (m, 1H), 4.21-4.49 (m, 2H), 3.97-4.19 (m, 1H), 3.38-3.83 (m, 2H), 3.00-3.30 (m, 2H), 1.72 (s, 3H), 1.31 (d, J=6.6 Hz, 3H), 0.99 (d, J=6.6 Hz, 3H), 0.87 (d, J=6.6 Hz, 3H). 19F NMR (DMSO-d6) δ: −114.13 (s, 1F) and (S)-4-(4-acryloyl-2-methylpiperazin-1-yl)-1-(6-amino-2-isopropyl-4-methylpyridin-3-yl)-6-chloro-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-one (63 mgs, second eluting atropisomer, 3371970) as a yellow solid. m/z (ESI, +ve ion) 576.0 (M+H)+. 1H NMR (DMSO-d6) δ : 8.39 (br d, J=4.8 Hz, 1H), 7.48-7.58 (m, 1H), 7.22-7.36 (m, 3H), 6.77-6.93 (m, 1H), 6.15-6.26 (m, 2H), 5.76-5.79 (m, 2H), 5.74-5.76 (m, 1H), 4.89 (br s, 1H), 4.21-4.45 (m, 2H), 3.96-4.19 (m, 1H), 3.40-3.81 (m, 2H), 2.99-3.30 (m, 2H), 1.73 (s, 3H), 1.32 (d, J=6.6 Hz, 3H), 0.99 (d, J=6.6 Hz, 3H), 0.87 (d, J=6.6 Hz, 3H). 19F NMR (DMSO-d6) δ: −114.09 (s, 1F)
Example 184 4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-7-(2-amino-6-fluorophenyl)-1-(4-((dimethylamino)methyl)-2-isopropyl-6-methylphenyl)-6-fluoropyrido[2,3-d]pyrimidin-2(1H)-oneTo a solution of 2,6-dichloro-5-fluoronicotinamide (998 mg, 4.78 mmol, intermediate S) in tetrahydrofuran (15 mL) was added oxalyl chloride, 2.0M in DCM (2.45 mL, 4.89 mmol) dropwise. The resulting mixture was then stirred at 65° C. under N2 for 3 hours. Then, the mixture was cooled to room temperature and was then concentrated under reduced pressure to afford a light-yellow syrup which was redissolved in tetrahydrofuran (15 mL). Then, 4-(((tert-butyldiphenylsilyl)oxy)methyl)-2-isopropyl-6-methylaniline (2.12 g, 5.08 mmol, intermediate 1-37) in tetrahydrofuran (15 mL) was added to the solution. The resulting mixture was then stirred at room temperature for 30 min. Then, the mixture was concentrated under reduced pressure provided N4((4-(((tert-butyldiphenylsilyl)oxy)methyl)-2-isopropyl-6-methylphenyl)carbamoyl)-2,6-dichloro-5-fluoronicotinamide which was used in the next step without purification requirement. m/z (ESI, +ve ion) 652.2 (M+H).
Step 2: 1-(4-(((tert-Butyldiphenylsilyl)oxy)methyl)-2-isopropyl-6-methylphenyl)-7-chloro-6-fluoropyrido[2,3-d]pyrimidine-2,4(1H,3H)-dioneTo a stirred solution of crude N-((4-(((tert-butyldiphenylsilyl)oxy)methyl)-2-isopropyl-6-methylphenyl)carbamoyl)-2,6-dichloro-5-fluoronicotinamide (2.9 g, 4.44 mmol) in tetrahydrofuran (16.0 mL) at 0° C. was added potassium bis(trimethylsilyl)amide (8.89 mL, 8.89 mmol). After the mixture was stirred at room temperature for 2 hours, an additional potassium bis(trimethylsilyl)amide (1.0 mL, 1.0 mmol) was added. After 30 mins, an additional potassium bis(trimethylsilyl)amide (1.0 mL, 1.0 mmol) was added. The resulting mixture was then stirred at room temperature for 15 min. The reaction was quenched by saturated NH4Cl (75 mL) and diluted with EtOAc (50 mL). The mixture was then extracted with EtOAc (1×30 mL). The organic layer was collected, dried over MgSO4, and concentrated under reduced pressure. Chromatographic purification of the residue (silica gel, 0%-40% EtOAc/heptane) provided 1-(4-(((tert-butyldiphenylsilyl)oxy)methyl)-2-isopropyl-6-methylphenyl)-7-chloro-6-fluoropyrido[2,3-d]pyrimidine-2,4(1H,3H)-dione (2.365 g, 3.84 mmol, 86% yield) as a light-yellow solid. m/z (ESI, +ve ion) 616.0 (M+H)+. 1H NMR (400 MHz, DMSO-d6) δ 0.% (d, J=6.8 Hz, 3H), 1.05 (d, J=6.8 Hz, 3H), 1.08 (s, 9H), 1.96 (s, 3H), 2.67 (sept, J=6.8 Hz, 1H), 4.84 (s, 2H), 7.12 (s, 1H), 7.34 (s, 1H), 7.40-7.53 (m, 6H), 7.69 (dd, J=6.2, 1.2 Hz, 4H), 8.46 (d, J=7.5 Hz, 1H), 12.18 (br s, 1H).
Step 3: tert-Butyl (2R,5S)-4-(1-(4-(((tert-butyldiphenylsilyl)oxy)methyl)-2-isopropyl-6-methylphenyl)-7-chloro-6-fluoro-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylateTo a solution of 1-(4-(((tert-butyldiphenylsilyl)oxy)methyl)-2-isopropyl-6-methylphenyl)-7-chloro-6-fluoropyrido[2,3-d]pyrimidine-2,4(1H,3H)-dione (2.37 g, 3.84 mmol) in acetonitrile (20 mL) under N2 was DIPEA (1.00 mL, 5.76 mmol) and POCl3 (0.537 mL, 5.76 mmol) at room temperature. The resulting mixture was then stirred at 60° C. for 1 hour 20 mins. The mixture was then cooled to room temperature and was concentrated under reduced pressure. The crude mixture was then dissolved in dichloromethane (20 mL) and was cooled to 0° C. Then, DIPEA (3.34 mL, 19.19 mmol) was added, followed by tert-butyl (2R,5S)-2,5-dimethylpiperazine-1-carboxylate (1.65 g, 7.68 mmol, eNovation Chemicals LLC, Bridgewater, NJ, USA). The resulting mixture was then stirred at room temperature for 2.5 hours. Then, the mixture was diluted with water (150 mL) and EtOAc (50 mL). The mixture was then extracted with EtOAc (2×30 mL). The combined organic extracts were then dried over MgSO4 and concentrated under reduced pressure. Chromatographic purification of the residue (silica gel, 0%-50% EtOAc/heptane) provided tert-butyl (2R,5S)-4-(1-(4-(((tert-butyldiphenylsilyl)oxy)methyl)-2-isopropyl-6-methylphenyl)-7-chloro-6-fluoro-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (2.78 g, 3.42 mmol, 89% yield) as a tan foam. m/z (ESI, +ve ion) 812.1 (M+H)+. 1H NMR (400 MHz, DMSO-d6) δ 0.96 (dd, J=13.5, 6.8 Hz, 3H), 1.02 (dd, J=6.8, 3.4 Hz, 3H), 1.08 (s, 9H), 1.10-1.13 (m, 2H), 1.28 (br dd, J=10.2, 6.6 Hz, 3H), 1.44 (s, 9H), 1.87 (s, 3H), 2.34-2.47 (m, 1H), 3.42-3.59 (m, 1H), 3.62-3.71 (m, 1H), 3.76-3.88 (m, 1H), 3.89-4.09 (m, 1H), 4.13-4.25 (m, 1H), 4.26-4.39 (m, 1H), 4.74-4.80 (m, 1H), 4.83 (s, 2H), 7.11 (br d, J=6.4 Hz, 1H), 7.31 (br d, J=10.0 Hz, 1H), 7.42-7.54 (m, 6H), 7.65-7.75 (m, 4H), 8.35 (dd, J=12.9, 8.3 Hz, 1H).
Step 4: tert-Butyl (2R,5S)-4-(7-(2-amino-6-fluorophenyl)-1-(4-(((tert-butyldiphenylsilyl)oxy)methyl)-2-isopropyl-6-methylphenyl)-6-fluoro-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylateA solution of tert-butyl (2R,5S)-4-(1-(4-(((tert-butyldiphenylsilyl)oxy)methyl)-2-isopropyl-6-methylphenyl)-7-chloro-6-fluoro-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (450 mg, 0.554 mmol), (2-amino-6-fluorophenyl)boronic acid (129 mg, 0.831 mmol, Aces Pharma, Princeton, NJ, USA), potassium carbonate (383 mg, 2.77 mmol), tetrakis(triphenylphosphine)palladium(0) (64.0 mg, 0.055 mmol) in dioxane (4.4 mL) and water (1.1 mL) was deoxygenated by bubbling nitrogen gas through the solvents for 10 mins. Then, the mixture was stirred at 90° C. overnight. Then, the mixture was cooled to room temperature and was concentrated under reduced pressure. Chromatographic purification of the residue (silica gel, 0%-100% EtOAc/heptane) provided tert-butyl (2R,5S)-4-(7-(2-amino-6-fluorophenyl)-1-(4-(((tert-butyldiphenylsilyl)oxy)methyl)-2-isopropyl-6-methylphenyl)-6-fluoro-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (513.4 mg, 0.579 mmol, 94% yield) as a goldenrod-colored. m/z (ESI, +ve ion) 887.1 (M+H)+.
Step 5: 2-Methyl-2-propanyl (2R,5S)-4-(7-(2-(bis(((2-methyl-2-propanyl)oxy)carbonyl)amino)-6-fluorophenyl)-6-fluoro-1-(2-methyl-4-((((2-methyl-2-propanyl)(diphenyl)silyl)oxy)methyl)-6-(2-propanyl)phenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethyl-1-piperazinecarboxylateTo a solution of tert-butyl (2R,5S)-4-(7-(2-amino-6-fluorophenyl)-1-(4-(((tert-butyldiphenylsilyl)oxy)methyl)-2-isopropyl-6-methylphenyl)-6-fluoro-2-oxo-1,2-dihydropyrido[2,3d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (490 mg, 0.552 mmol) in dichloromethane (4 mL) was added di-tert-butyl dicarbonate (241 mg, 1.11 mmol), 4-dimethylaminopyridine (135 mg, 1.11 mmol), and triethylamine (0.155 mL, 1.11 mmol). The resulting mixture was then stirred at room temperature for 4.5 hours. Then, the mixture was concentrated under reduced pressure. Chromatographic purification of the residue (silica gel, 0%-100% EtOAc/heptane) provided 2-methyl-2-propanyl (2R,5S)-4-(7-(2-(bis(((2-methyl-2-propanyl)oxy)carbonyl)amino)-6-fluorophenyl)-6-fluoro-1-(2-methyl-4-((((2-methyl-2-propanyl)(diphenyl)silyl)oxy)methyl)-6-(2-propanyl)phenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethyl-1-piperazinecarboxylate (470 mg, 0.432 mmol, 78% yield) as a yellow solid. m/z (ESI, +ve ion) 1087.2 (M+H)+.
Step 6: 2-Methyl-2-propanyl (2R,4)-4-(7-(2-(bis(((2-methyl-2-propanyl)oxy)carbonyl)amino)-6-fluorophenyl)-6-fluoro-1-(4-(hydroxymethyl)-2-methyl-6-(2-propanyl)phenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethyl-1-piperazinecarboxylateTo a solution of 2-methyl-2-propanyl (2R,5S)-4-(7-(2-(bis(((2-methyl-2-propanyl)oxy)carbonyl)amino)-6-fluorophenyl)-6-fluoro-1-(2-methyl-4-((((2-methyl-2-propanyl)(diphenyl)silyl)oxy)methyl)-6-(2-propanyl)phenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethyl-1-piperazinecarboxylate (465 mg, 0.428 mmol) in tetrahydrofuran (3.5 mL) at 0° C. was added tetra-n-butylammonium fluoride IM in THF (0.428 mL, 0.428 mmol). The resulting mixture was then stirred at room temperature for 4.5 hours and was then concentrated under reduced pressure. Chromatographic purification of the residue (silica gel, 0%-100% EtOAc/heptane) provided 2-methyl-2-propanyl (2R,5S)-4-(7-(2-(bis(((2-methyl-2-propanyl)oxy)carbonyl)amino)-6-fluorophenyl)-6-fluoro-1-(4-(hydroxymethyl)-2-methyl-6-(2-propanyl)phenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethyl-1-piperazinecarboxylate (125 mg, 0.147 mmol, 34% yield) as a yellow solid. m/z (ESI, +ve ion) 749.2 (M+H)+.
Step 7: 2-Methyl-2-propanyl (2R,5S)-4-(7-(2-(bis(((2-methyl-2-propanyl)oxy)carbonyl)amino)-6-fluorophenyl)-1-(4-((dimethylamino)methyl)-2-methyl-6-(2-propanyl)phenyl)-6-fluoro-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethyl-1-piperazinecarboxylateTo a solution of 2-methyl-2-propanyl (2R,5S)-4-(7-(2-(bis(((2-methyl-2-propanyl)oxy)carbonyl)amino)-6-fluorophenyl)-6-fluoro-1-(4-(hydroxymethyl)-2-methyl-6-(2-propanyl)phenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethyl-1-piperazinecarboxylate (125 mg, 0.147 mmol) in dichloromethane (1.5 mL) at 0° C. under N2 was added triethylamine (0.062 mL, 0.442 mmol) followed by a solution of methanesulfonyl chloride (0.011 mL, 0.147 mmol) in DCM (0.2 mL). The resulting mixture was then stirred at 0° C. for 1 hour. Then, dimethylamine (2M in THF) (0.736 mL, 1.47 mmol) and triethylamine (0.062 mL, 0.442 mmol) were added. The mixture was stirred at room temperature for 30 mins. Then, the mixture was diluted with saturated NaHCO3 (5 mL) and was then extracted with EtOAc (2×20 mL). Chromatographic purification of the residue (silica gel, 0%-20% NH3 2M in MeOH/DCM) provided 2-methyl-2-propanyl (2R,5S)-4-(7-(2-(bis(((2-methyl-2-propanyl)oxy)carbonyl)amino)-6-fluorophenyl)-1-(4-((dimethylamino)methyl)-2-methyl-6-(2-propanyl)phenyl)-6-fluoro-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethyl-1-piperazinecarboxylate (98 mg, 0.112 mmol, 76% yield) as a yellow solid. m/z (ESI, +ve ion) 876.2 (M+H)+.
Step 8: 4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-7-(2-amino-6-fluorophenyl)-1-(4-((dimethylamino)methyl)-2-isopropyl-6-methylphenyl)-6-fluoropyrido[2,3-d]pyrimidin-2(1H)-one trifluoroacetic acidTo a solution of 2-methyl-2-propanyl (2R,5S)-4-(7-(2-(bis(((2-methyl-2-propanyl)oxy)carbonyl)amino)-6-fluorophenyl)-1-(4-((dimethylamino)methyl)-2-methyl-6-(2-propanyl)phenyl)-6-fluoro-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethyl-1-piperazinecarboxylate (98 mg, 0.112 mmol) in dichloromethane (1.0 mL) was added trifluoroacetic acid (0.167 mL, 2.237 mmol). The resulting mixture was then stirred at room temperature for 40 mins. Then, the mixture was concentrated and dried in vacuo. Then, the residue was dissolved in DCM (20 mL) and saturated NaHCO3 (40 mL) was added. The mixture was then stirred at room temperature for 15 mins. The organic layer was then collected and aqueous layer was extracted with EtOAc (2×20 mL). The combined organic extracts were then dried over MgSO4, concentrated, and dried in vacuo. The residue was then dissolved in dichloromethane (1 mL). The mixture was then cooled to 0° C. under N2 and triethylamine (0.015 mL, 0.106 mmol) was added followed by a solution of acryloyl chloride (8.6 μl, 0.106 mmol) in DCM (0.2 mL) dropwise. After stirring at 0° C. for 5 mins, triethylamine (0.075 mL) and potassium carbonate (0.032 mL, 0.530 mmol) were added. The mixture was then stirred for 25 mins. The mixture was then quenched with saturated NaHCO3 (5 mL) and was extracted with EtOAc (3×15 mL). The combined organic extracts were then dried over MgSO4 and concentrated. Chromatographic purification of the residue (silica gel, 0%-20% NH3 2M in MeOH/DCM) then by purified via preparative HPLC (Phenomenex Gemini C18 column, 150×30 mm, 10u, 110 A, 10-100% 0.1% TFA in MeCN/H2O) provided 4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-7-(2-amino-6-fluorophenyl)-1-(4-((dimethylamino)methyl)-2-isopropyl-6-methylphenyl)-6-fluoropyrido[2,3-d]pyrimidin-2(1H)-one (2.3 mg, 1.83 μmol, 1.7% yield), TFA salt as a yellow solid. m/z (ESI, +ve ion) 630.2 (M+H)+. 19F NMR (METHANOL-d4) δ: −76.95 (s, 1F), −128.59 (dd, J=32.5, 4.8 Hz, 1F), −130.14 (br d, J=32.1 Hz, 1F). 1H NMR (400 MHz, METHANOL-d4) δ 8.17-8.25 (m, 1H), 7.31-7.36 (m, 1H), 7.21-7.25 (m, 1H), 6.75-6.92 (m, 3H), 6.57 (td, J=2.67, 5.65 Hz, 1H), 6.30 (ddd, J=1.76, 6.69, 16.64 Hz, 1H), 5.83 (ddd, J=1.76, 6.17, 10.52 Hz, 1H), 4.87-5.15 (m, 2H), 4.19-4.59 (m, 2H), 3.89-4.11 (m, 2H), 3.83 (br s, 2H), 2.58-2.66 (m, 1H), 2.42-2.58 (m, 6H), 1.99-2.04 (m, 3H), 1.45-1.51 (m, 3H), 1.19 (dd, J=2.49, 6.84 Hz, 3H), 0.99-1.06 (m, 3H), 0.91 (br t, J=6.74 Hz, 3H).
Example 185 1-((2R,5S)-4-(6-Chloro-7-(2-fluorophenyl)-2-imino-1-(2-isopropylphenyl)-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazin-1-yl)prop-2-en-1-oneA vial was charged with tert-butyl (2R,5S)-4-((2,5-dichloro-6-(2-fluorophenyl)pyridin-3-yl)(imino)methyl)-2,5-dimethylpiperazine-1-carboxylate (Intermediate 165, 1 g, 2.1 mmol), copper(I) iodide (40 mg, 0.2 mmol), and potassium phosphate (1.1 g, 5.2 mmol). The vial was evacuated and backfilled with nitrogen. DMSO (4 ml) were added to the reaction mixture, followed by addition of 2-(methylethyl)phenylamine (365 μl, 2.7 mmol) added. The reaction mixture was heated to 80° C. After 1 hour, the reaction mixture was diluted with water and extracted with EtOAc. The organic phase was washed with 1M LiCl solution and dried over MgSO4. The filtrate was concentrated in vacuo to give the crude material. Purification by preparative SFC (Chiralcel IC column (5 μm, 21×250 mm). F=80 mL, (20% MeOH with 0.2% NEt3)/80% CO2) afforded tert-butyl (2R,5S)-4-((5-chloro-6-(2-fluorophenyl)-2-((2-isopropylphenyl)amino)pyridin-3-yl)(imino)methyl)-2,5-dimethylpiperazine-1-carboxylate. m/z (ESI, +ve ion): 580.0 (M+H)+.
Step 2: tert-Butyl (2R,5S)-4-((5-chloro-6-(2-fluorophenyl)-2-((2-isopropylphenyl)amino)pyridin-3-yl)cyanoimino)methyl)-2,5-dimethylpiperazine-1-carboxylateTriethylamine (0.2 mL, 1.5 mmol) and cyanogen bromide (3 M in DCM: 0.29 mL, 0.86 mmol) were added to a solution of tert-butyl (2R,5S)-4-((5-chloro-6-(2-fluorophenyl)-2-((2-isopropylphenyl)amino)pyridin-3-yl)(imino)methyl)-2,5-dimethylpiperazine-1-carboxylate (50 mg, 0.086 mmol) in tetrahydrofuran (1.5 mL). The reaction mixture was allowed to stir overnight. The reaction mixture was filtered and the filtrate was washed with aqueous saturated NaHCO3 solution, dried over MgSO4 and concentrated under reduced pressure. The crude product was taken onto the next step without further purification. m/z (ESI, +ve ion): 604.6 (M)+.
Step 3: 1-((2R,5S)-4-(6-Chloro-7-(2-fluorophenyl)-2-imino-1-(2-isopropylphenyl)-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazin-1-yl)prop-2-en-1-oneHydrochloric acid (5N, 0.13 mL, 0.66 mmol) was added to a solution of tert-butyl (2R,5S)-4-((5-chloro-6-(2-fluorophenyl)-2-((2-isopropylphenyl)amino)pyridin-3-yl)(cyanoimino)methyl)-2,5-dimethylpiperazine-1-carboxylate (40 mg, 0.066 mmol) in MeOH (1 mL). The reaction mixture was stirred for 10 min at rt and then heated to 72° C. for one hour. The reaction mixture was cooled to rt, neutralized with aqueous saturated NaHCO3 solution and extracted with EtOAc. The organic extract was washed with brine and dried over MgSO4. The solution was filtered and concentrated in vacuo to give the crude material. Residual solvents were removed from the crude residue by azeotropic distillation with toluene (3 mL). The residue was dissolved in DCM (2 mL) and the solution was cooled to 10° C. 1,1′-Dimethyltriethylamine (0.023 mL, 0.13 mmol) added, followed by solution of 2-propenoyl chloride (1.1 M in DCM; 0.06 mL, 0.066 mmol). After 5 min, the reaction mixture was concentrated under reduced pressure. The residue was dissolved in MeOH (1 mL) and treated with hydrochloric acid (5N, 0.3 mL). The reaction mixture was heated to 72° C. for 30 min and then neutralized with aqueous saturated NaHCO3 solution (5 mL). The reaction mixture was extracted with EtOAc and washed with brine. The organic phase was separated and dried over MgSO4. The solvent was removed under reduced pressure and the crude material was absorbed onto silica gel. Purification by silica gel chromatography (eluent: 10-100% of EtOAc/heptane, followed by 100% (3:1 EtOH in EtOAc), followed by 100% (20% (2 M NH3/MeOH) in DCM)) provided 1-((2R,5S)-4-(6-chloro-7-(2-fluorophenyl)-2-imino-1-(2-isopropylphenyl)-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazin-1-yl)prop-2-en-1-one (10 mg, 9 μmol, 13% yield). m/z (ESI, +ve ion): 559.3 (M+H)+. 1H NMR (400 MHz, DMSO-d6) δ 0.94-1.01 (m, 3H) 1.14-1.17 (m, 3H) 1.22-1.31 (m, 3H) 1.47 (br s, 3H) 2.52-2.66 (m, 1H) 3.38-4.29 (m, 4H) 4.52-5.16 (m, 2H) 5.78 (br d, J=10.37 Hz, 1H) 6.21 (dt, J=16.64, 2.15 Hz, 1H) 6.65-6.98 (m, 1H) 7.14-7.64 (m, 8H) 8.43-8.69 (m, 1H) 9.04 (br s, 1H)
Example 186 4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-7-(2-fluorophenyl)-1-(2-isopropylphenyl)pyrido[2,3-d]pyrimidin-2(1H)-oneThe synthesis of the title compound is described in Step 1 of Example 185.
Step 2: tert-Butyl (2R,5S)-4-(6-chloro-7-(2-fluorophenyl)-1-(2-isopropylphenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylateA solution of tert-butyl (2R,5S)-4-((5-chloro-6-(2-fluorophenyl)-2-((2-isopropylphenyl)amino)pyridin-3-yl)(imino)methyl)-2,5-dimethylpiperazine-1-carboxylate (0.065 g, 0.11 mmol) and 1,1′-carbonyldiimidazole (0.036 g, 0.22 mmol, Acros Organics) in 2-Me-tetrahydrofuran (1 mL) was heated to 100° C. for 12 h. The reaction mixture was cooled to rt and absorbed onto a pad of silica gel. Purification by silica gel chromatography (eluent: 10-100% of EtOAc/heptane) afforded tert-butyl (2R,5S)-4-(6-chloro-7-(2-fluorophenyl)-1-(2-isopropylphenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (25 mg, 0.04 mmol, 36% yield). m/z (ESI, +ve ion): 605.6 (M+H)+.
Step 3: 4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-7-(2-fluorophenyl)-1-(2-isopropylphenyl)pyrido[2,3-d]pyrimidin-2(1H)-oneTFA (0.1 mL) was added to a solution of tert-butyl (2R,5S)-4-(6-chloro-7-(2-fluorophenyl)-1-(2-isopropylphenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate in (1 mL) at rt. After 1 h, the reaction mixture was concentrated under reduced pressure and residual solvents were removed from the crude residue by azeotropic distillation with toluene (2 mL). The crude material was dissolved in DCM (2 mL) and the solution was cooled to 10° C., followed by the addition of 1,1′-dimethyltriethylamine (0.02 mL, 0.1 mmol) and 2-propenoyl chloride (1.1 M in DCM; 0.067 mL, 0.074 mmol). After 10 min, the reaction mixture was diluted with DCM and treated with aqueous saturated NaHCO3 (5 mL) and brine. The organic phase was separated, dried over MgSO4 and filtered. The crude material was absorbed onto silica gel and purified by silica gel chromatography (eluent: 10-100% EtOAc/heptane) to afford 4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-7-(2-fluorophenyl)-1-(2-isopropylphenyl)pyrido[2,3-d]pyrimidin-2(1H)-one (10 mg, 0.018 mmol, 36% yield). m/z (ESI, +ve ion): 560.2 (M+H)+. 1H NMR (400 MHz, DMSO-d6) δ 0.92-1.01 (m, 3H) 1.07 (d, J=6.84 Hz, 3H) 1.17-1.37 (m, 6H) 2.53-2.61 (m, 1H) 3.39-4.27 (m, 4H) 4.42-4.95 (m, 2H) 5.69-5.80 (m, 1H) 6.19 (br d, J=16.79 Hz, 1H) 6.73-6.92 (m, 1H) 7.14 (d, J=7.67 Hz, 1H) 7.18-7.37 (m, 5H) 7.38-7.44 (m, 1H) 7.46-7.55 (m, 1H) 8.35-8.47 (m, 1H)
Example 187 N-[5-[6-Chloro-4-[(2S,5R)-2,5-dimethyl-4-prop-2-enoyl-piperazin-1-yl]-7-(2-fluorophenyl)-2-oxo-pyrido[2,3-d]pyrimidin-1-yl]-4,6-diisopropyl-pyrimidin-2-yl]-N-methyl-acetamideMethylamine (2.0 M in tetrahydrofuran, 0.312 mL, 0.624 mmol) was added to a stirred solution of tert-butyl (2R,5S)-4-(1-(2-bromo-4,6-diisopropylpyrimidin-5-yl)-6-chloro-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (91 mg, 0.125 mmol, Intermediate 232) in acetonitrile (0.5 mL). The reaction mixture was stirred at room temperature for 9 h. The reaction mixture was concentrated in vacuo. The crude product was purified by silica gel chromatography (eluent 0-50% [(3:1) EtOAc/EtOH]/heptane) to provide tert-butyl (2R,5S)-4-(6-chloro-1-(4,6-diisopropyl-2-(methylamino)pyrimidin-5-yl)-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate as a yellow solid (45 mg, 0.066 mmol, 53.1% yield). 1H NMR (400 MHz, CHLOROFORM-d) δ 8.13 (1H, s) 7.45-7.52 (1H, m) 7.21-7.29 (2H, m) 7.14-7.20 (1H, m) 3.53-5.12 (7H, m) 3.05 (3H, d, 1=4.98 Hz) 2.49-2.61 (2H, m) 1.57 (9H, s) 1.44-1.54 (3H, m) 1.30-1.36 (3H, m) 1.21 (3H, dd, 1=6.34, 4.25 Hz) 1.01 (6H, br t, 1=7.26 Hz). m/z (ESI, +ve ion): 679.1 (M+H)+.
Step 2: tert-Butyl (2R,5S)-4-(6-chloro-1-(4,6-diisopropyl-2-(N-methylacetamido)pyrimidin-5-yl)-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylatetert-Butyl(2R,5S)-4-(6-chloro-1-(4,6-diisopropyl-2-(methylamino)pyrimidin-5-yl)-7-(2-fluorophenyl)-2-oxo-1.2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (154 mg, 0.227 mmol), N,N-diisopropylethylamine (0.198 mL, 1.134 mmol), and 4-(N,N-dimethylamino)-pyridine (1.385 mg, 0.011 mmol) were mixed in toluene (1 mL) in a sealed vial. Acetyl chloride (0.036 mL, 0.453 mmol) was added, and the reaction mixture was stirred at 80° C. for 18 h. The reaction mixture was diluted with EtOAc (60 mL) and washed with saturated aqueous NH4Cl (40 mL). The organic layer was separated, washed with brine (40 mL), dried over MgSO4, filtered, and concentrated in vacuo. The crude product was purified by silica gel chromatography (eluent 0-50% [(3:1) EtOAc/EtOH]/heptane) to provide tert-butyl (2R,5S)-4-(6-chloro-1-(4,6-diisopropyl-2-(N-methylacetamido)pyrimidin-5-yl)-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate as a yellow solid (135 mg, 0.187 mmol, 83% yield). 1H NMR (400 MHz, CHLOROFORM-d) δ 8.19 (1H, s) 7.47-7.54 (1H, m) 7.15-7.29 (3H, m) 3.59 (3H, s) 3.55-5.12 (6H, m) 2.73 (2H, dq. J=13.01, 6.58 Hz) 2.62 (3H, s) 1.59 (9H, s) 1.49-1.57 (3H, m) 1.32-1.39 (3H, m) 1.27 (6H, dd, J=6.63, 2.49 Hz) 1.07 (6H, t, J=6.84 Hz). m/z (ESI, +ve ion): 721.3 (M+1H).
Step 3: N-(5-(4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-7-(2-fluorophenyl)-2-oxopyrido[2,3-d]pyrimidin-1(2H)-yl)-4,6-diisopropylpyrimidin-2-yl)-N-methylacetamideTrifluoroacetic acid (0.5 mL, 6.71 mmol) was added to a stirred solution of tert-butyl (2R,5S)-4-(6-chloro-1-(4,6-diisopropyl-2-(N-methylacetamido)pyrimidin-5-yl)-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (135 mg, 0.187 mmol) in dichloromethane (1 mL). The reaction mixture was stirred at room temperature for 20 min. The reaction mixture was concentrated in vacuo to give crude N-(5-(6-chloro-4-((2S,5R)-2,5-dimethylpiperazin-1-yl)-7-(2-fluorophenyl)-2-oxopyrido[2,3-d]pyrimidin-1(2H)-yl)-4,6-diisopropylpyrimidin-2-yl)-N-methylacetamide that was used without purification assuming 100% yield.
Acryloyl chloride (1.1 M in DCM, 0.204 mL, 0.224 mmol) was added to a stirred mixture of the crude N-(5-(6-chloro-4-((2S,5R)-2,5-dimethylpiperazin-1-yl)-7-(2-fluorophenyl)-2-oxopyrido[2,3-d]pyrimidin-1(2H)-yl)-4,6-diisopropylpyrimidin-2-yl)-N-methylacetamide (116 mg, 0.187 mmol) and N,N-diisopropylethylamine (0.163 mL, 0.934 mmol) in dichloromethane (1 mL). The reaction mixture was stirred at room temperature for 45 min. The reaction mixture was diluted with DCM (50 mL) and washed with saturated aqueous NH4Cl (30 mL). The organic layer was separated, dried over MgSO4, filtered, and concentrated in vacuo. The crude product was purified by silica gel chromatography (eluent 0-100% EtOAc/heptane) to provide N-(5-(4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-7-(2-fluorophenyl)-2-oxopyrido[2,3-d]pyrimidin-1(2H)-yl)-4,6-diisopropylpyrimidin-2-yl)-N-methylacetamide as a light yellow solid (95 mg, 0.141 mmol, 75% yield). 1H NMR (400 MHz, CHLOROFORM-d) δ 8.19 (1H, s) 7.47-7.55 (1H, m) 7.16-7.28 (3H, m) 6.59-6.76 (1H, m) 6.42-6.52 (1H, m) 5.84-5.91 (1H, m) 3.59 (3H, s) 3.52-5.26 (6H, m) 2.65-2.78 (2H, m) 2.61 (3H, s) 1.47-1.58 (4H, m) 1.37-1.42 (2H, m) 1.27 (6H, dd, J=6.63, 2.28 Hz) 1.03-1.11 (6H, m). m/z (ESI, +ve ion): 675.3 (M+H)+.
Example 188 N-[5-[6-Chloro-4-[(2S,5R)-2,5-dimethyl-4-prop-2-enoyl-piperazin-1-yl]-7-(2-fluorophenyl)-2-oxo-pyrido[2,3-d]pyrimidin-1-yl]-4,6-diisopropyl-pyrimidin-2-yl]acetamide4-Methoxybenzylamine (0.283 mL, 2.147 mmol) was added to a stirred solution of tert-butyl (2R,5S)-4-(1-(2-bromo-4,6-diisopropylpyrimidin-5-yl)-6-chloro-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (313 mg, 0.429 mmol, Intermediate 232) in acetonitrile (1.5 mL). The reaction mixture was stirred at room temperature for 20 h before being warmed to 40° C. and stirred for another 7 h. The reaction mixture was concentrated in vacuo. The crude product was purified by silica gel chromatography (eluent 0-50% [(3:1) EtOAc/EtOH]/heptane) to provide tert-butyl (2R,5S)-4-(6-chloro-1-(4,6-diisopropyl-2-((4-methoxybenzyl)amino)pyrimidin-5-yl)-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate as a light yellow solid (179 mg, 0.228 mmol, 53.1% yield). 1H NMR (400 MHz, CHLOROFORM-d) 8.05 (1H, m) 7.25-7.45 (3H, m) 7.04-7.19 (3H, m) 6.79-6.93 (2H, m) 3.76 (3H, s) 3.43-5.31 (8H, m) 2.40-2.57 (2H, m) 1.48 (9H, s) 1.37-1.44 (3H, m) 1.18-1.27 (3H, m) 1.07-1.17 (6H, m) 0.88-0.99 (6H, m). m/z (ESI, +ve ion): 785.2 (M+H)+.
Step 2: tert-Butyl (2R,5S)-4-(6-chloro-1-(4,6-diisopropyl-2-(N-(4-methoxybenzyl)acetamido)pyrimidin-5-yl)-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylatetert-Butyl (2R,5S)-4-(6-chloro-1-(4,6-diisopropyl-2-((4-methoxybenzyl)amino)pyrimidin-5-yl)-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (169 mg, 0.215 mmol), N,N-diisopropylethylamine (0.188 mL, 1.076 mmol), and 4-(N,N-dimethylamino)-pyridine (2 mg, 0.016 mmol) were mixed in toluene (1 mL) in a sealed vial. Acetyl chloride (0.034 mL, 0.430 mmol) was added, and the reaction mixture was stirred at 80° C. for 16 h. The reaction mixture was diluted with EtOAc (50 mL) and washed with saturated aqueous NH4Cl (40 mL). The organic layer was separated, washed with brine (40 mL), dried over MgSO4, filtered, and concentrated in vacuo. The crude product was purified by silica gel chromatography (eluent 0-70% EtOAc/heptane) to provide tert-butyl (2R,5S)-4-(6-chloro-1-(4,6-diisopropyl-2-(N-(4-methoxybenzyl)acetamido)pyrimidin-5-yl)-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate as a light yellow solid (108 mg, 0.131 mmol, 60.7% yield). 1H NMR (400 MHz, CHLOROFORM-d) δ 8.08 (1H, s) 7.36-7.44 (1H, m) 7.33 (2H, d, J=8.71 Hz) 7.05-7.15 (3H, m) 6.69-6.73 (2H, m) 5.22 (2H, s) 3.72 (3H, s) 3.35-5.01 (6H, m) 2.55-2.67 (2H, m) 2.51 (3H, s) 1.48 (9H, s) 1.38-1.46 (3H, m) 1.20-1.28 (3H, m) 1.15 (6H, dd, J=6.63, 2.70 Hz) 0.93 (6H, t, J=7.26 Hz). m/z (ESI, +ve ion): 827.3 (M+H)+.
Step 3: N—(S (4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-7-(2-fluorophenyl)-2-oxopyrido[2,3-d]pyrimidin-1(2H)-yl)-4,6-diisopropylpyrimidin-2-yl)acetamideTrifluoroacetic acid (0.5 mL, 6.71 mmol) and trifluoromethane sulfonic acid (0.05 mL, 0.563 mmol) were added to a stirred solution of tert-butyl (2R,5S)-4-(6-chloro-1-(4,6-diisopropyl-2-(N-(4-methoxybenzyl)acetamido)pyrimidin-5-yl)-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (100 mg, 0.121 mmol) in dichloromethane (0.5 mL). The reaction mixture was stirred at room temperature for 7 h. The reaction mixture was diluted with DCM (40 mL) and washed with saturated aqueous NaHCO3 (25 mL). The organic layer was separated, dried over MgSO4, filtered, and concentrated in vacuo to give crude N-(5-(6-chloro-4-((2S,5R)-2,5-dimethylpiperazin-1-yl)-7-(2-fluorophenyl)-2-oxopyrido[2,3-d]pyrimidin-1(2H)-yl)-4,6-diisopropylpyrimidin-2-yl)acetamide that was used without purification assuming 100% yield.
Acryloyl chloride (1.1 M in DCM, 0.131 mL, 0.144 mmol) was added to a stirred solution of the crude N-(5-(6-chloro-4-((2S,5R)-2,5-dimethylpiperazin-1-yl)-7-(2-fluorophenyl)-2-oxopyrido[2,3-d]pyrimidin-1(2H)-yl)-4,6-diisopropylpyrimidin-2-yl)acetamide (73 mg, 0.120 mmol) in dichloromethane (0.5 mL). The reaction mixture was stirred at room temperature for 2 h. The reaction mixture was concentrated in vacuo. The crude product was purified by silica gel chromatography (eluent 0-50% [(3:1) EtOAc/EtOH]/heptane) to provide N-(5-(4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-7-(2-fluorophenyl)-2-oxopyrido[2,3<d]pyrimidin-1(2H)-yl)-4,6-diisopropylpyrimidin-2-yl)acetamide as a white solid (20 mg, 0.030 mmol, 25.2% yield). 1H NMR (400 MHz, CHLOROFORM-d) δ 8.17 (1H, s) 7.97 (1H, s) 7.46-7.53 (1H, m) 7.14-7.28 (3H, m) 6.57-6.74 (1H, m) 6.40-6.50 (1H, m) 5.82-5.89 (1H, m) 3.50-5.24 (6H, m) 2.59-2.73 (5H, m) 1.45-1.56 (4H, m) 1.38 (2H, br d, J=6.84 Hz) 1.23 (6H. dd, J=6.63, 2.70 Hz) 0.99-1.07 (6H, m). m/z (ESI, +ve ion): 661.2 (M+H)+.
Example 189 4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-1-(4-amino-6-isopropylpyrimidin-5-yl)-6-chloro-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-oneA mixture of tert-butyl (2R,5S)-4-(1-(4-(bis(4-methoxybenzyl)amino)-6-isopropylpyrimidin-5-yl)-6,7-dichloro-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.228 g, 0.284 mmol, Intermediate 211), (2-fluorophenyl)boronic acid (0.060 g, 0.43 mmol; Combi-Blocks, Inc., San Diego, CA), PdCl2(dppf) (0.021 g, 0.028 mmol), and potassium acetate (0.084 g, 0.85 mmol) in 1,4-dioxane (2.6 mL)/water (0.26 mL) was sparged with nitrogen then stirred at 100° C. for 1 h. The reaction mixture was diluted with EtOAc (100 mL), added to a separatory funnel, and washed with saturated, aqueous sodium bicarbonate (2×75 mL); the organic layer was separated, dried over anhydrous Na2SO4, and concentrated in vacuo. The crude product was adsorbed onto silica and was purified via automated flash chromatography (silica gel, 0-60% [(3:1) EtOAc/EtOH]/heptane) to give tert-butyl (2R,5S)-4-(1-(4-(bis(4-methoxybenzyl)amino)-6-isopropylpyrimidin-5-yl)-6-chloro-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (252 mg, 0.292 mmol, >99% yield) as a brown solid. MS (ESI, +ve) m/z: 863.1 (M+1)+.
Step 2: 4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-1-(4-amino-6-isopropylpyrimidin-5-yl)-6-chloro-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-oneA solution of tert-butyl (2R,5S)-4-(1-(4-(bis(4-methoxybenzyl)amino)-6-isopropylpyrimidin-5-yl)-6-chloro-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.252 g, 0.292 mmol) in 2,2,2-trifluoroacetic acid (3.33 g, 29.2 mmol) was stirred at RT for 15 min. The reaction mixture was concentrated.
A yellow solution of the resulting oil, acryloyl chloride (0.5 M in DCM, 0.700 mL, 0.350 mmol), and DIPEA (0.153 mL, 0.876 mmol) in dichloromethane (1.5 mL) was stirred at RT for 15 min. The reaction mixture was diluted with EtOAc (100 mL), added to a separatory funnel, and washed with saturated, aqueous sodium bicarbonate (2×75 mL); the organic layer was separated, dried over anhydrous Na2SO4, and concentrated in vacuo.
A solution of the resulting oil in 2,2,2-trifluoroacetic acid (3.33 g, 29.2 mmol) was heated in the microwave at 100° C. for 5 min, 120° C. for 10 min, then 100° C. for 30 min. The reaction mixture was concentrated. The crude product in DCM was loaded onto the column and was purified via automated flash chromatography (silica gel, 0-100% [(3:1) EtOAc/EtOH]/heptane then 0-5% [2 M ammonia in MeOH]/DCM) to give 4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-1-(4-amino-6-isopropylpyrimidin-5-yl)-6-chloro-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-one (11 mg, 0.019 mmol, 7% yield) as an off-white solid. 1H NMR (400 MHz, CDCl3) δ 8.54 (s, 1H) 8.08-8.13 (m, 1H) 7.41-7.48 (m, 1H) 7.23-7.30 (m, 1H) 7.16-7.22 (m, 1H) 7.08-7.16 (m, 1H) 6.50-6.71 (m, 1H) 6.33-6.46 (m, 1H) 5.75-5.85 (m, 1H) 4.89-5.19 (m, 2H) 4.79-4.88 (m, 2H) 4.28-4.53 (m, 1H) 3.38-4.01 (m, 3H) 2.48-2.65 (m, 1H) 1.30-1.52 (m, 6H) 1.15-1.20 (m, 3H) 0.99-1.05 (m, 3H). 19F NMR (377 MHz, CDCl3) δ −112.26-−112.15 (m, 1F). MS (ESI, +ve) m/z: 576.8 (M+1)+.
Example 189-1 4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-1-(4-amino-6-isopropylpyrimidin-5-yl)-6-chloro-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-one, Single IsomerAtropisomers of 4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-1-(4-amino-6-isopropylpyrimidin-5-yl)-6-chloro-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-one (139 mg, 0.241 mmol) were separated by chiral SFC: ID 250×21 mm, 5 μm, 45% MeOH/CO2, 70 g/min, 204 bar. This gave 4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-1-(4-amino-6-isopropylpyrimidin-5-yl)-6-chloro-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-one (58 mg, 0.10 mmol, 42% yield) (first eluting isomer) as a yellow solid. 1H NMR (400 MHz, CDCl3) δ 8.57 (s, 1H) 8.11 (s, 1H) 7.40-7.50 (m, 1H) 7.23-7.29 (m, 1H) 7.08-7.21 (m, 2H) 6.50-6.69 (m, 1H) 6.34-6.45 (m, 1H) 5.76-5.85 (m, 1H) 4.90-5.21 (m, 1H) 4.74 (s, 2H) 3.39-4.56 (m, 5H) 2.49-2.63 (m, 1H) 1.33-1.52 (m, 6H) 1.19 (d, J=6.6 Hz, 3H) 1.03 (br d, J=6.4 Hz, 3H). 19F NMR (377 MHz, CDCl3) δ −112.21-−112.13 (m, 1F). MS (ESI, +ve) m/z: 577.1 (M+1)+.
Example 189-2 4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-1-(4-amino-6-isopropylpyrimidin-5-yl)-6-chloro-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-one, Single IsomerAtropisomers of 4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-1-(4-amino-6-isopropylpyrimidin-5-yl)-6-chloro-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-one (139 mg, 0.241 mmol) were separated by chiral SFC: ID 250×21 mm, 5 μm, 45% MeOH/CO2, 70 g/min, 204 bar. This gave 4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-1-(4-amino-6-isopropylpyrimidin-5-yl)-6-chloro-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-one (58 mg, 0.10 mmol, 42% yield) (second eluting isomer) as a yellow solid. 1H NMR (400 MHz, CDCl3) δ 8.56 (s, 1H) 8.08-8.12 (m, 1H) 7.41-7.49 (m, 1H) 7.24-7.30 (m, 1H) 7.17-7.22 (m, 1H) 7.10-7.16 (m, 1H) 6.51-6.70 (m, 1H) 6.35-6.45 (m, 1H) 5.77-5.85 (m, 1H) 4.87-5.20 (m, 1H) 4.76 (br s, 2H) 3.39-4.51 (m, 5H) 2.50-2.66 (m, 1H) 1.30-1.51 (m, 6H) 1.18 (d, J=6.6 Hz, 3H) 1.01 (d, J=6.8 Hz, 3H). 19F NMR (377 MHz, CDCl3) δ −112.22-−112.11 (m, 1F). MS (ESI, +ve) m/z: 577.1 (M+1)+.
Example 190 4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-1-(4-amino-6-isopropylpyrimidin-5-yl)-6-chloro-7-(2-fluoro-6-hydroxyphenyl)pyrido[2,3-d]pyrimidin-2(1H)-oneA solution of tert-butyl (2R,5S)-4-(1-(4-(bis(4-methoxybenzyl)amino)-6-isopropylpyrimidin-5-yl)-6,7-dichloro-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.194 g, 0.241 mmol. Intermediate 211) and 2,2,2-trifluoroacetic acid (2.75 g, 24.1 mmol) in dichloromethane (1.2 mL) was stirred at RT for 15 min. The reaction mixture was concentrated.
A yellow solution of the resulting oil, acryloyl chloride (0.5 M in DCM, 0.579 mL, 0.290 mmol), and DIPEA (0.126 mL, 0.724 mmol) in dichloromethane (1.2 mL) was stirred at RT for 30 min. The reaction mixture was diluted with EtOAc (100 mL), added to a separatory funnel, and washed with saturated, aqueous sodium bicarbonate (2×75 mL); the organic layer was separated, dried over anhydrous Na2SO4, and concentrated in vacuo to give 4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-1-(4-(bis(4-methoxybenzyl)amino)-6-isopropylpyrimidin-5-yl)-6,7-dichloropyrido[2,3-d]pyrimidin-2(1H)-one (0.171 g, 0.226 mmol). MS (ESI, +ve) m/z: 756.7 (M+1)+.
Step 2: 4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-1-(4-amino-6-isopropylpyrimidin-5-yl)-6,7-dichloropyrido[2,3-d]pyrimidin-2(1H)-oneA solution of 4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-1-(4-(bis(4-methoxybenzyl)amino)-6-isopropylpyrimidin-5-yl)-6,7-dichloropyrido[2,3-d]pyrimidin-2(1H)-one (0.171 g, 0.226 mmol) and trifluoromethane sulfonic acid (0.020 mL, 0.226 mmol) in 2,2,2-trifluoroacetic acid (1.8 mL, 22.6 mmol) was stirred at RT for 30 min, 50° C. for 30 min, then 80° C. for 5 min. The reaction mixture was concentrated, diluted with EtOAc (100 mL), added to a separatory funnel, and washed with saturated, aqueous sodium bicarbonate (2×75 mL); the organic layer was separated, dried over anhydrous Na2SO4, and concentrated in vacuo to give 4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-1-(4-amino-6-isopropylpyrimidin-5-yl)-6,7-dichloropyrido[2,3-d]pyrimidin-2(1H)-one (0.100 g, 0.193 mmol). MS (ESI, +ve) m/z: 516.8 (M+1)+.
Step 3: 4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-1-(4-amino-6-isopropylpyrimidin-5-yl)-6-chloro-7-(2-fluoro-6-hydroxyphenyl)pyrido[2,3-d]pyrimidin-2(1H)-oneA mixture of 4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-1-(4-amino-6-isopropylpyrimidin-5-yl)-6,7-dichloropyrido[2,3-d]pyrimidin-2(1H)-one (0.100 g, 0.193 mmol), potassium F-phenol-trifluoroborate (0.063 g, 0.29 mmol, Intermediate Q), PdCl2(dppf) (0.014 g, 0.019 mmol), and potassium acetate (0.057 g, 0.58 mmol) in 1,4-dioxane (1.8 mL)/water (0.18 mL) was sparged with nitrogen then stirred at 100° C. for 1.5 h. The reaction mixture was diluted with EtOAc (100 mL), added to a separatory funnel, and washed with saturated, aqueous sodium bicarbonate (2×75 mL); the organic layer was separated, dried over anhydrous Na2SO4, and concentrated in vacuo. The crude product was adsorbed onto silica and was purified via automated flash chromatography (silica gel, 0-100% [(3:1) EtOAc/EtOH]/heptane: elutes slowly) to give 4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-1-(4-amino-6-isopropylpyrimidin-5-yl)-6-chloro-7-(2-fluoro-6-hydroxyphenyl)pyrido[2,3-d]pyrimidin-2(1H)-one (36 mg, 0.061 mmol, 31% yield) as a light brown solid. 1H NMR (400 MHz, CDCl3) δ 8.47-8.53 (m, 1H) 8.10-8.20 (m, 1H) 7.35-7.63 (m, 1H) 7.21-7.31 (m, 1H) 6.73-6.79 (m, 1H) 6.47-6.72 (m, 2H) 6.31-6.44 (m, 1H) 5.75-5.87 (m, 1H) 4.79-5.23 (m, 4H) 4.18-4.68 (m, 2H) 3.75-4.04 (m, 2H) 2.58-2.72 (m, 1H) 1.33-1.49 (m, 6H) 1.21-1.25 (m, 3H) 1.19 (d, J=6.6 Hz, 3H). 19F NMR (377 MHz, CDCl3) δ −111.92 (br s, 1F). MS (ESI, +ve) m/z: 592.8 (M+1)+.
Example 191-1 4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-1-(2-chloro-4-isopropyl-6-methylpyrimidin-5-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-one, Single IsomerA solution of tert-butyl (2R,5S)-4-(6-chloro-1-(2-chloro-4-isopropyl-6-methylpyrimidin-5-yl)-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.048 g, 0.073 mmol, Intermediate 215) in 2,2,2-trifluoroacetic acid (0.560 mL, 7.31 mmol) was stirred at RT for 10 min. The reaction mixture was concentrated.
A solution of the resulting oil, acryloyl chloride (0.5 M in DCM, 0.175 mL, 0.088 mmol), and DIPEA (0.051 mL, 0.292 mmol) in dichloromethane (0.7 mL) was stirred at RT for 10 min. The reaction mixture was diluted with EtOAc (100 mL), added to a separatory funnel, and washed with saturated, aqueous sodium bicarbonate (2×75 mL); the organic layer was separated, dried over anhydrous Na2SO4, and concentrated in vacuo. The crude product was adsorbed onto silica and was purified via automated flash chromatography (silica gel, 0-50% [(3:1) EtOAc/EtOH]/heptane) to give 4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-1-(2-chloro-4-isopropyl-6-methylpyrimidin-5-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-one (42 mg, 0.069 mmol, 94% yield) as alight yellow solid. 1H NMR (400 MHz, CDCl3) δ 8.13 (s, 1H) 7.42-7.50 (m, 1H) 7.17-7.24 (m, 2H) 7.09-7.17 (m, 1H) 6.51-6.71 (m, 1H) 6.36-6.45 (m, 1H) 5.75-5.85 (m, 1H) 3.43-5.24 (m, 6H) 2.63-2.77 (m, 1H) 2.20-2.27 (m, 3H) 1.29-1.53 (m, 6H) 1.22 (d, J=6.8 Hz, 3H) 1.04 (d, J=6.6 Hz, 3H). 19F NMR (377 MHz, CDCl3) δ −112.95-−112.86 (m, 1F). MS (ESI, +ve) m/z: 610.0 (M+1)+.
Example 191-2 4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-1-(2-chloro-4-isopropyl-6-methylpyrimidin-5-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-one, Single IsomerA solution of tert-butyl (2R,5S)-4-(6-chloro-1-(2-chloro-4-isopropyl-6-methylpyrimidin-5-yl)-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.103 g, 0.157 mmol, Intermediate 204) in 2,2,2-trifluoroacetic acid (1.20 mL, 15.7 mmol) was stirred at RT for 10 min. The reaction mixture was concentrated.
A solution of the resulting oil, acryloyl chloride (0.5 M in DCM, 0.345 mL, 0.173 mmol), and DIPEA (0.082 mL, 0.471 mmol) in dichloromethane (0.8 mL) was stirred at RT for 15 min. The reaction mixture was diluted with EtOAc (100 mL), added to a separatory funnel, and washed with saturated, aqueous sodium bicarbonate (2×100 mL); the organic layer was separated, dried over anhydrous Na2SO4, and concentrated in vacuo. The crude product was adsorbed onto silica and was purified via automated flash chromatography (silica gel, 0-60% [(3:1) EtOAc/EtOH]/heptane) to give 4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-1-(2-chloro-4-isopropyl-6-methylpyrimidin-5-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-one (47 mg, 0.077 mmol, 49% yield) as an off-white solid. 1H NMR (400 MHz, CDCl3) δ 8.13 (s, 1H) 7.42-7.50 (m, 1H) 7.17-7.24 (m, 2H) 7.10-7.17 (m, 1H) 6.51-6.70 (m, 1H) 6.41 (br t, J=14.7 Hz, 1H) 5.77-5.85 (m, 1H) 3.42-5.19 (m, 6H) 2.63-2.75 (m, 1H) 2.19-2.25 (m, 3H) 1.31-1.51 (m, 6H) 1.23 (d, J=6.8 Hz, 3H) 1.07 (br d, J=6.6 Hz, 3H). 19F NMR (377 MHz, CDCl3) δ −112.96-−112.83 (m, 1F). MS (ESI, +ve) m/z: 610.1 (M+1)+.
Example 192 4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-7-(2-amino-6-fluorophenyl)-1-(4-amino-6-isopropylpyrimidin-5-yl)-6-chloropyrido[2,3-d]pyrimidin-2(11H)-oneA solution of tert-butyl (2R,5S)-4-(1-(4-(bis(4-methoxybenzyl)amino)-6-isopropylpyrimidin-5-yl)-6,7-dichloro-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.723 g, 0.899 mmol, Intermediate 211) and 2,2,2-trifluoroacetic acid (10 g, 90 mmol) in dichloromethane (5 mL) was stirred at RT for 15 min. The reaction mixture was concentrated.
A yellow solution of the resulting oil, acryloyl chloride (0.5 M in DCM, 2.16 mL, 1.08 mmol), and DIPEA (0.470 mL, 2.70 mmol) in dichloromethane (5 mL) was stirred at RT for 30 min. The reaction mixture was diluted with EtOAc (100 mL), added to a separatory funnel, and washed with saturated, aqueous sodium bicarbonate (2×75 mL); the organic layer was separated, dried over anhydrous Na2SO4, and concentrated in vacuo to give 4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-1-(4-(bis(4-methoxybenzyl)amino)-6-isopropylpyrimidin-5-yl)-6,7-dichloropyrido[2,3-d]pyrimidin-2(1H)-one. MS (ESI, +ve) m/z: 756.8 (M+1)+.
Step 2: 4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-1-(4-amino-6-isopropylpyrimidin-5-yl)-6,7-dichloropyrido[2,3-d]pyrimidin-2(1H)-oneA solution of 4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-1-(4-(bis(4-methoxybenzyl)amino)-6-isopropylpyrimidin-5-yl)-6,7-dichloropyrido[2,3-d]pyrimidin-2(1)-one (0.682 g, 0.900 mmol) and trifluoromethane sulfonic acid (0.400 mL, 4.50 mmol) in 2,2,2-trifluoroacetic acid (6.9 mL, 90 mmol) was stirred at RT for 1 h. The reaction mixture was concentrated, diluted with EtOAc (100 mL), added to a separatory funnel, and washed with saturated, aqueous sodium bicarbonate (2×75 mL); the organic layer was separated, dried over anhydrous Na2SO4, and concentrated in vacuo to give 4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-1-(4-amino-6-isopropylpyrimidin-5-yl)-6,7-dichloropyrido[2,3-d]pyrimidin-2(1H)-one (0.500 g, 0.966 mmol, >99% yield) as a light yellow solid. MS (ESI, +ve) m, z: 516.8 (M+1)+.
Step 3: 4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-7-(2-amino-6-fluorophenyl)-1-(4-amino-6-isopropylpyrimidin-5-yl)-6-chloropyrido[2,3-d]pyrimidin-2(1H)-oneA mixture of 4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-1-(4-amino-6-isopropylpyrimidin-5-yl)-6,7-dichloropyrido[2,3-d]pyrimidin-2(H)-one (0.055 g, 0.11 mmol), (2-amino-6-fluorophenyl)boronic acid pinacol ester (0.038 mL, 0.16 mmol, CombiPhos Catalysts, Inc., Trenton, NJ), PdCl2(dppf) (8 mg, 11 μmol), and potassium acetate (0.031 g, 0.32 mmol) in 1,4-dioxane (1 mL)/water (0.1 mL) was sparged with nitrogen then stirred at 100° C. for 1.5 h. The reaction mixture was diluted with EtOAc (100 mL), added to a separatory funnel, and washed with saturated, aqueous sodium bicarbonate (2×75 mL); the organic layer was separated, dried over anhydrous Na2SO4, and concentrated in vacuo. The crude product was adsorbed onto silica and was purified via automated flash chromatography (silica gel, 0-10% [2 M ammonia in MeOH]/DCM then 0-100% [(3:1) EtOAc/EtOH]/heptane) to give 4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-7-(2-amino-6-fluorophenyl)-1-(4-amino-6-isopropylpyrimidin-5-yl)-6-chloropyrido[2,3-d]pyrimidin-2(H)-one (3 mg, 5.1 μmol, 5% yield) as a yellow film. 1H NMR (400 MHz, CDCl3) δ 8.54-8.61 (m, 1H) 8.13-8.22 (m, 1H) 7.11-7.19 (m, 1H) 6.35-6.72 (m, 4H) 5.77-5.86 (m, 1H) 4.80-5.23 (m, 2H) 4.67-4.79 (m, 2H) 4.17-4.57 (m, 3H) 3.78-4.07 (m, 1H) 3.74 (s, 1H) 2.50-2.79 (m, 1H) 1.38-1.53 (m, 6H) 1.20 (d, J=6.6 Hz, 3H) 0.97-1.06 (m, 3H). 19F NMR (377 MHz, CDCl3) δ −111.95 (br d, J=23.4 Hz, 1F). MS (ESI, +ve) m/z: 591.8 (M+1)+.
Example 193 4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-7-(2-fluorophenyl)-1-(4-isopropyl-2,6-dimethylpyrimidin-5-yl)pyrido[2,3-d]pyrimidin-2(1H)-one, Single IsomerA mixture of tert-butyl (2R,5S)-4-(6-chloro-1-(2-chloro-4-isopropyl-6-methylpyrimidin-5-yl)-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.103 g, 0.157 mmol, Intermediate 204), methylzinc chloride (2 M in THF, 0.094 mL, 0.188 mmol; Sigma-Aldrich, St. Louis, MO), and [1,1′-bis(diphenylphosphino)ferrocene]palladium(II) chloride (6 mg, 8 μmol) in 1,4-dioxane (0.8 mL) was sparged with nitrogen then stirred at 50° C. for 16 h. The reaction mixture was diluted with EtOAc (100 mL), added to a separatory funnel, and washed with saturated, aqueous ammonium chloride (2×75 mL); the organic layer was separated, dried over anhydrous Na2SO4, and concentrated in vacuo. The crude product was adsorbed onto silica and was purified via automated flash chromatography (silica gel, 0-50% [(3:1) EtOAc/EtOH]/heptane) to give tert-butyl (2R,5S)-4-(6-chloro-7-(2-fluorophenyl)-1-(4-isopropyl-2,6-dimethylpyrimidin-5-yl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpipemzine-1-carboxylate (41 mg, 0.064 mmol, 41% yield). 1H NMR (400 MHz, CDCl3) δ 8.11 (s, 1H) 7.39-7.47 (m, 1H) 7.15-7.23 (m, 2H) 7.09-7.14 (m, 1H) 3.41-5.10 (m, 6H) 2.70 (s, 3H) 2.18 (s, 3H) 1.51 (s, 9H) 1.45 (br s, 3H) 1.29 (d, J=6.8 Hz, 3H) 1.21 (d, J=6.8 Hz, 3H) 1.05 (d, J=6.8 Hz, 3H). 19F NMR (377 MHz, CDCl3) δ −112.70 (br s, 1F). MS (ESI, +ve) m/z: 636.2 (M+1)+.
Step 2: 4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-7-(2-fluorophenyl)-1-(4-isopropyl-2,6-dimethylpyrimidin-5-yl)pyrido[2,3-d]pyrimidin-2(1H)-oneA solution of tert-butyl (2R,5S)-4-(6-chloro-7-(2-fluorophenyl)-1-(4-isopropyl-2,6-dimethylpyrimidin-5-yl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.041 g, 0.064 mmol) in 2,2,2-trifluoroacetic acid (0.49 mL, 6.4 mmol) was stirred at RT for 10 min. The reaction mixture was concentrated.
A solution of the resulting oil, acryloyl chloride (0.5 M in DCM, 0.14 mL, 0.071 mmol), and DIPEA (0.034 mL, 0.19 mmol) in dichloromethane (0.3 mL) was stirred at RT for 15 min. The reaction mixture was diluted with EtOAc (100 mL), added to a separatory funnel, and washed with saturated, aqueous sodium bicarbonate (2×75 mL); the organic layer was separated, dried over anhydrous Na2SO4, and concentrated in vacuo. The crude product was adsorbed onto silica and was purified via automated flash chromatography (silica gel, 0-80% [(3:1) EtOAc/EtOH]/heptane) to give 4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-7-(2-fluorophenyl)-1-(4-isopropyl-2,6-dimethylpyrimidin-5-yl)pyrido[2,3-d]pyrimidin-2(1H)-one (50 mg, 0.085 mmol, >99% yield) as an off-white solid. 1H NMR (400 MHz, CDCl3) δ 8.11 (s, 1H) 7.40-7.48 (m, 1H) 7.15-7.23 (m, 2H) 7.12 (t, J=9.1 Hz, 1H) 6.51-6.70 (m, 1H) 6.33-6.45 (m, 1H) 5.76-5.84 (m, 1H) 3.44-5.19 (m, 6H) 2.70 (s, 3H) 2.61-2.69 (m, 1H) 2.19 (s, 3H) 1.30-1.51 (m, 6H) 1.27 (d, J=6.8 Hz, 3H) 1.05 (d, J=6.6 Hz, 3H). 19F NMR (377 MHz, CDCl3) δ −112.73-−112.64 (m, 1F). MS (ESI, +ve) m/z: 590.2 (M+1)+.
Example 194 4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-7-(2-fluorophenyl)-1-(4-isopropyl-6-methylpyrimidin-5-yl)pyrido[2,3-d]pyrimidin-2(1H)-oneTo a solution of 2,5,6-trichloronicotinamide (2.43 g, 10.8 mmol; Intermediate P) in THF (20 mL) was added oxalyl chloride (5.38 mL, 10.8 mmol), and the resulting mixture was stirred at 65° C. under a reflux condenser and drying tube for 2 h.
The reaction mixture was concentrated, dissolved in THF (20 mL), and cooled to 0° C.: a solution of 4-isopropyl-6-methylpyrimidin-5-amine (1.48 g, 9.79 mmol; Intermediate 1-5) in THF (10 mL) was added, and the resulting mixture was stirred at 0° C. for 1 h. The reaction was diluted with EtOAc, quenched with brine and saturated aqueous NH4Cl, extracted with EtOAc, and concentrated in vacuo. The crude product was purified via automated flash chromatography (silica gel, 0-5% MeOH/DCM) to give 2,5,6-trichloro-N-((4-isopropyl-6-methylpyrimidin-5-yl)carbamoyl)nicotinamide (3.24 g, 8.05 mmol, 82% yield) as a brown solid.
To a solution of 2,5,6-trichloro-N-((4-isopropyl-6-methylpyrimidin-5-yl)carbamoyl)nicotinamide (3.24 g, 7.95 mmol) in THF (40 mL) in a water-bath was added dropwise potassium bis(trimethylsilyl)amide (1 M in THF, 14.3 mL, 14.3 mmol). The mixture was stirred for 10 min; the water bath was removed, and the reaction mixture was stirred at RT for 30 min. The reaction mixture was quenched with saturated aqueous NH4Cl and was extracted with EtOAc. The combined organics were dried over Na2SO4, filtered, and concentrated in vacuo. The product was azeotropically dried to give 6,7-dichloro-1-(4-isopropyl-6-methylpyrimidin-5-yl)pyrido[2,3-d]pyrimidine-2,4(1H,3H)-dione. 1H NMR (DMSO-d6) δ 12.20-12.47 (m, 11H), 8.90-9.18 (m, 1H), 8.46-8.67 (m, 11H), 2.82-3.09 (m, 1H), 2.19-2.28 (m, 3H), 1.06-1.10 (m, 3H), 0.98-1.04 (m, 3H). MS (ESI, +ve) m/z: 366.0 (M+1)+.
Step 2: 6-Chloro-7-(2-fluorophenyl)-1-(4-isopropyl-6-methylpyrimidin-5-yl)pyrido[2,3-d]pyrimidine-2,4(1H,3H)-dioneA mixture of 6,7-dichloro-1-(4-isopropyl-6-methylpyrimidin-5-yl)pyrido[2,3-d]pyrimidine-2,4(1H,3H)-dione (0.350 g, 0.956 mmol), (2-fluorophenyl)boronic acid (0.201 g, 1.43 mmol; Combi-Blocks, Inc., San Diego, CA), PdCl3(dppf) (0.070 g, 0.096 mmol), and potassium acetate (0.281 g, 2.87 mmol) in 1,4-dioxane (8.7 mL)/water (0.87 mL) was sparged with nitrogen then stirred at 100° C. for 16 h. The reaction mixture was diluted with EtOAc (100 mL), added to a separatory funnel, and washed with saturated, aqueous sodium bicarbonate (2×75 mL); the organic layer was separated, dried over anhydrous Na2SO4, and concentrated in vacuo. The crude product was adsorbed onto silica and was purified via automated flash chromatography (silica gel, 0-80% EtOAc/heptane) to give 6-chloro-7-(2-fluorophenyl)-1-(4-isopropyl-6-methylpyrimidin-5-yl)pyrido[2,3-d]pyrimidine-2,4(1H,3H)-dione (200 mg, 0.470 mmol, 49% yield) as an amber oil. MS (ESI, +ve) m/z: 425.9 (M+1)+.
Step 3: tert-Butyl (2R5S)-4-(6-chloro-7-(2-fluorophenyl)-1-(4-isopropyl-6-methylpyrimidin-5-yl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylateA solution of 6-chloro-7-(2-fluorophenyl)-1-(4-isopropyl-6-methylpyrimidin-5-yl)pyrido[2,3-d]pyrimidine-2,4(1H,3H)-dione (0.200 g, 0.470 mmol), phosphoryl trichloride (0.053 mL, 0.56 mmol), and DIPEA (0.491 mL, 2.82 mmol) in acetonitrile (1.2 mL) was stirred at 80° C. for 30 min. The reaction mixture was removed from the beating block, and a solution of tert-butyl (2R,5S)-2,5-dimethylpiperazine-1-carboxylate (0.151 g, 0.704 mmol; eNovation Chemicals LLC, Bridgewater, NJ) in acetonitrile (1.2 mL) was added; the reaction mixture was stirred at RT for 1 h. The reaction mixture was diluted with EtOAc (100 mL), added to a separatory funnel, and washed with saturated, aqueous sodium bicarbonate (2-75 mL); the organic layer was separated dried over anhydrous Na2SO4, and concentrated in vacuo. The crude product was loaded onto the column and was purified via automated flash chromatography (silica gel, 0-70% [(3:1) EtOAc/EtOH]/heptane) to give tert-butyl (2R,5S)-4-(6-chloro-7-(2-fluorophenyl)-1-(4-isopropyl-6-methylpyrimidin-5-yl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (112 mg, 0.180 mmol, 38% yield) as an amber oil. 1H NMR (400 MHz, CDCl3) δ 9.03 (s, 1H) 8.12 (s, 1H) 7.39-7.47 (m, 1H) 7.14-7.20 (m, 2H) 7.07-7.14 (m, 1H) 4.81-5.05 (m, 1H) 4.31-4.81 (m, 1H) 3.78-4.23 (m, 3H) 3.44-3.66 (m, 1H) 2.68-2.80 (m, 1H) 2.25 (d, J=5.8 Hz, 3H) 1.52 (s, 9H) 1.29 (d, J=6.8 Hz, 3H) 1.21-1.28 (m, 6H) 1.06 (dd, J=11.8, 6.6 Hz, 3H). 19F NMR (376 MHz, CDCl3) δ −112.68 (br d, J=5.2 Hz, 1F). MS (ESI, +ve) m/z: 621.8 (M+1)+.
Step 4: 4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-1-chloro-7-(2-fluorophenyl)-1-(4-isopropyl-6-methylpyrimidin-5-yl)pyrido[2,3-d]pyrimidin-2(1H)-oneA solution of tert-butyl (2R,5S)-4-(6-chloro-7-(2-fluorophenyl)-1-(4-isopropyl-6-methylpyrimidin-5-yl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.112 g, 0.180 mmol) in 2,2,2-trifluoroacetic acid (1.38 mL, 18.0 mmol) was stirred at RT for 30 min. The reaction mixture was concentrated in vacuo.
A solution of the resulting oil, acryloyl chloride (0.5 M in DCM, 0.360 mL, 0.180 mmol), and DIPEA (0.125 mL, 0.720 mmol) in dichloromethane (0.9 mL) was stirred at RT for 1 h. The reaction mixture was diluted with EtOAc (100 mL), added to a separatory funnel, and washed with saturated, aqueous sodium bicarbonate (2×75 mL); the organic layer was separated. dried over anhydrous Na2SO4, and concentrated in vacuo. The crude product was adsorbed onto silica and was purified via automated flash chromatography (silica gel, 0-100% [(3:1) EtOAc/EtOH]/heptane) to give 4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-7-(2-fluorophenyl)-1-(4-isopropyl-6-methylpyrimidin-5-yl)pyrido[2,3-d]pyrimidin-2(1H)-one (97 mg, 0.17 mmol, 94% yield) as a yellow solid. 1H NMR (400 MHz, CDCl3) δ 9.03 (s, 1H) 8.13 (s, 1H) 7.39-7.48 (m, 1H) 7.07-7.21 (m, 3H) 6.50-6.71 (m, 1H) 6.41 (br t, J=14.8 Hz, 1H) 5.76-5.86 (m, 1H) 4.33-5.22 (m, 3H) 3.45-4.08 (m, 3H) 2.65-2.81 (m, 1H) 2.21-2.28 (m, 3H) 1.31-1.48 (m, 6H) 1.23 (dd, J=6.8, 3.5 Hz, 3H) 1.02-1.09 (m, 3H). 19F NMR (376 MHz, CDCl3) δ −112.71-−112.60 (m, 1F). MS (ESI, +ve) m/z: 575.8 (M+1)+.
Example 194-1 4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-7-(2-fluorophenyl)-1-(4-isopropyl-6-methylpyrimidin-5-yl)pyrido[2,3-d]pyrimidin-2(1H)-one, Single IsomerAtropisomers of 4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-7-(2-fluorophenyl)-1-(4-isopropyl-6-methylpyrimidin-5-yl)pyrido[2,3-d]pyrimidin-2(1H)-one (97 mg, 0.168 mmol) were separated by chiral SFC: Chirakpak IC, ID 250×2 mm, 5 μm, 45% methanol/CO2, 70 mL/min, 220 nm, 185 bar. This gave 4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-7-(2-fluorophenyl)-1-(4-isopropyl-6-methylpyrimidin-5-yl)pyrido[2,3-d]pyrimidin-2(1H)-one (31 mg, 0.054 mmol, 32% yield; first eluting isomer) as a light yellow solid. 1H NMR (400 MHz, CDCl3) δ 9.03 (s, 1H) 8.13 (s, 1H) 7.40-7.48 (m, 1H) 7.15-7.21 (m, 2H) 7.07-7.15 (m, 1H) 6.52-6.71 (m, 1H) 6.34-6.46 (m, 1H) 5.76-5.86 (m, 1H) 5.02-5.20 (m, 1H) 4.31-4.53 (m, 1H) 4.00-4.13 (m, 1H) 3.45-4.00 (m, 3H) 2.66-2.80 (m, 1H) 2.21-2.27 (m, 3H) 1.31-1.52 (m, 6) 1.24 (d, J=6.6 Hz, 3H) 1.07 (d, J=6.6 Hz, 3H). 19F NMR (377 MHz, CDCl3) δ −112.71-−112.58 (m, 1F). MS (ESI, +ve) m/z: 575.9 (M+1)+.
Example 194-2 4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-4-chloro-7-(2-fluorophenyl)-1-(4-isopropyl-6-methylpyrimidin-5-yl)pyrido[2,3-d]pyrimidin-2(1H)-one, Single IsomerAtropisomers of 4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-7-(2-fluorophenyl)-1-(4-isopropyl-6-methylpyrimidin-5-yl)pyrido[2,3-d]pyrimidin-2(1H)-one (97 mg, 0.168 mmol) were separated by chiral SFC: Chirakpak IC, ID 250×2 mm, 5 μm, 45% methanol/CO2, 70 mL/min, 220 nm, 185 bar. This gave 4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-7-(2-fluorophenyl)-1-(4-isopropyl-6-methylpyrimidin-5-yl)pyrido[2,3-d]pyrimidin-2(1H)-one (10 mg, 0.017 mmol, 10% yield; second eluting isomer) as a light yellow solid. 1H NMR (400 MHz, CDCl3) δ 9.11 (s, 1H) 8.19 (s, 1H) 7.45-7.54 (m, 1H) 7.22-7.28 (m, 2H) 7.14-7.22 (m, 1H) 6.57-6.80 (m, 1H) 6.40-6.54 (m, 1H) 5.80-5.93 (m, 1H) 5.11-5.29 (m, 1H) 4.40-4.62 (m, 1H) 3.50-4.20 (m, 4H) 2.75-2.87 (m, 1H) 2.26-2.36 (m, 3H) 1.38-1.60 (m, 7H) 1.30 (d, J=6.8 Hz, 3H) 1.12 (d, J=6.6 Hz, 3H). 19F NMR (376 MHz, CDCl3) δ −112.70-−112.61 (m, 1F). MS (ESI, +ve) m/z: 575.9 (M+1)+.
Example 195 4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-7-(2-fluorophenyl)-1-(4-isopropyl-2,6-dimethylpyrimidin-5-yl)-6-methylpyrido[2,3-d]pyrimidin-2(1H)-one, Single IsomerA mixture of tert-butyl (2R,5S)-4-(6-chloro-1-(2-chloro-4-isopropyl-6-methylpyrimidin-5-yl)-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.103 g, 0.157 mmol: Intermediate 204), methylzinc chloride (2 M in THF, 0.094 mL, 0.188 mmol: Sigma-Aldrich, St. Louis, MO), and [1,1′-bis(diphenylphosphino)ferrocene]palladium(II) chloride (6 mg, 8 μmol) in 1,4-dioxane (0.8 mL) was sparged with nitrogen then stirred at 50° C. for 16 h. The reaction mixture was diluted with EtOAc (100 mL), added to a separatory funnel, and washed with saturated, aqueous ammonium chloride (2×75 mL): the organic layer was separated, dried over anhydrous Na2SO4, and concentrated in vacuo. The crude product was adsorbed onto silica and was purified via automated flash chromatography (silica gel, 0-50% [(3:1) EtOAc/EtOH]/heptane) to give tert-butyl (2R,5S)-4-(7-(2-fluorophenyl)-1-(4-isopropyl-2,6-dimethylpyrimidin-5-yl)-6-methyl-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (30 mg, 0.049 mmol, 31% yield). 1H NMR (400 MHz, CDCl3) δ 7.92 (s, 1H) 7.36-7.44 (m, 1H) 7.06-7.21 (m, 3H) 3.47-5.05 (m, 6H) 2.75 (s, 3H) 2.28 (d, J=1.5 Hz, 3H) 2.24 (s, 3H) 1.51 (s, 9H) 1.44 (br s, 3H) 1.28 (d, J=6.8 Hz, 3H) 1.22 (d, J=6.8 Hz, 3H) 1.05 (d, J=6.8 Hz, 3H). 19F NMR (377 MHz, CDCl3) δ −114.75 (br s, 1F). MS (ESI, +ve) m/z: 616.3 (M+1)+.
Step 2: 4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-7-(2-fluorophenyl)-1-(4-isopropyl-2,6-dimethylpyrimidin-5-yl)-6-methylpyrido[2,3-d]pyrimidin-2(1H)-oneA solution of tert-butyl (2R,5S)-4-(7-(2-fluorophenyl)-1-(4-isopropyl-2,6-dimethylpyrimidin-5-yl)-6-methyl-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.030 g, 0.049 mmol) in 2,2,2-trifluoroacetic acid (0.37 mL, 4.9 mmol) was stirred at RT for 10 min. The reaction mixture was concentrated.
A solution of the resulting oil, acryloyl chloride (0.5 M in DCM, 0.11 mL, 0.054 mmol), and DIPEA (0.025 mL, 0.15 mmol) in dichloromethane (0.24 mL) was stirred at RT for 15 min. The reaction mixture was diluted with EtOAc (100 mL), added to a separatory funnel, and washed with saturated, aqueous sodium bicarbonate (2×75 mL); the organic layer was separated, dried over anhydrous Na2SO4, and concentrated in vacuo. The crude product was adsorbed onto silica and was purified via automated flash chromatography (silica gel, 0-80% [(3:1) EtOAc/EtOH]/heptane) to give 4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-7-(2-fluorophenyl)-1-(4-isopropyl-2,6-dimethylpyrimidin-5-yl)-6-methylpyrido[2,3-d]pyrimidin-2(1H)-one (10 mg, 0.018 mmol, 36% yield) as an off-white solid. 1H NMR (400 MHz, CDCl3) δ 7.86-7.94 (m, 1H) 7.36-7.44 (m, 1H) 7.07-7.21 (m, 3H) 6.51-6.72 (m, 1H) 6.33-6.47 (m, 1H) 5.74-5.84 (m, 1H) 3.46-5.24 (m, 6H) 2.70 (s, 3H) 2.64-2.69 (m, 1H) 2.29 (br s, 3H) 2.14-2.22 (m, 3H) 1.27-1.48 (m, 6H) 1.21 (d, J=6.8 Hz, 3H) 1.04 (br d, J=6.6 Hz, 3H). 19F NMR (377 MHz, CDCl3) δ −114.83-−114.51 (m, 1F). MS (ESI, +ve) me: 570.2 (M+1)+.
Example 196 4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-1-(2-(dimethylamino)-4-isopropyl-6-methylpyrimidin-5-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-one, Single IsomerA solution of tert-butyl (2R,5S)-4-(6-chloro-1-(2-chloro-4-isopropyl-6-methylpyrimidin-5-yl)-7-(2-fluorophenyl)-2-oxo-1.2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.103 g, 0.157 mmol; Intermediate 204) and dimethylamine (2 M in THF, 1.18 mL, 2.35 mmol; Sigma-Aldrich, St. Louis, MO) was stirred at 50° C. for 4 h. The reaction mixture was diluted with EtOAc (100 mL), added to a separatory funnel, and washed with saturated, aqueous ammonium chloride (2-75 mL); the organic layer was separated, dried over anhydrous Na2SO4, and concentrated in vacuo. The crude product was adsorbed onto silica and was purified via automated flash chromatography (silica gel, 0-50% [(3:1) EtOAc/EtOH]/heptane) to give tert-butyl (2R,5S)-4-(6-chloro-1-(2-(dimethylamino)-4-isopropyl-6-methylpyrimidin-5-yl)-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (101 mg, 0.152 mmol, 97% yield) as a yellow oil. 1H NMR (400 MHz, CDCl3) δ 8.06 (s, 1H) 7.39-7.47 (m, 1H) 7.15-7.25 (m, 2H) 7.12 (t, J=9.1 Hz, 1H) 3.46-5.03 (m, 6H) 2.46-2.57 (m, 1H) 2.03 (s, 3H) 1.51 (s, 9H) 1.43 (br s, 3H) 1.23-1.33 (m, 9H) 1.17 (d, J=6.6 Hz, 3H) 1.00 (d, J=6.6 Hz, 3H). 19F NMR (377 MHz, CDCl3) δ −112.86 (br s, 1F). MS (ESI, +ve) m/z: 665.2 (M+1)+.
Step 2: 4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-1-(2-(dimethylamino)-4-isopropyl-6-methylpyrimidin-5-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-oneA solution of tert-butyl (2R,5S)-4-(6-chloro-1-(2-(dimethylamino)-4-isopropyl-6-methylpyrimidin-5-yl)-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.101 g, 0.152 mmol) in 2,2,2-trifluoroacetic acid (1.16 mL, 15.2 mmol) was stirred at RT for 10 min. The reaction mixture was concentrated.
A solution of the resulting oil, acryloyl chloride (0.5 M in DCM, 0.33 mL, 0.17 mmol), and DIPEA (0.079 mL, 0.46 mmol) in dichloromethane (0.8 mL) was stirred at RT for 15 min. The reaction mixture was diluted with EtOAc (100 mL), added to a separatory funnel, and washed with saturated, aqueous sodium bicarbonate (2×75 mL); the organic layer was separated. dried over anhydrous Na2SO4, and concentrated in vacuo. The crude product was adsorbed onto silica and was purified via automated flash chromatography (silica gel, 0-80% [(3:1) EtOAc/EtOH]/heptane) to give 4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-6-chloro-1-(2-(dimethylamino)-4-isopropyl-6-methylpyrimidin-5-yl)-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-one (97 mg, 0.157 mmol, >99% yield) as a yellow solid. 1H NMR (400 MHz, CDCl3) δ 8.07 (s, 1H) 7.40-7.48 (m, 1H) 7.16-7.26 (m, 2H) 7.12 (t, J=9.1 Hz, 1H) 6.50-6.71 (m, 1H) 6.39 (br t, J=15.2 Hz, 1H) 5.74-5.86 (m, 1H) 3.45-5.20 (m, 6H) 3.19 (s, 6H) 2.43-2.55 (m, 1H) 1.99-2.06 (m, 3H) 1.29-1.46 (m, 6H) 1.17 (d, J=6.8 Hz, 3H) 1.00 (d, J=6.6 Hz, 3H). 19F NMR (377 MHz, CDCl3) δ −112.90-−112.77 (m, 1F). MS (ESI, +ve) m/z: 619.3 (M+1)+.
Example 197-1 4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-1-(2-bromo-4-isopropyl-6-methylpyrimidin-5-yl)-6-chloro-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(11H)-one, Single IsomerA solution of 1-(2-bromo-4-isopropyl-6-methylpyrimidin-5-yl)-6-chloro-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidine-2,4(1H,3H)-dione (0.556 g, 1.10 mmol; Intermediate 216), phosphoryl trichloride (0.123 mL, 1.32 mmol), DIPEA (0.768 mL, 4.41 mmol) in acetonitrile (5.5 mL) was stirred at 80° C. for 30 min.
The solution was cooled in an ice bath, then tert-butyl (2R,5S)-2,5-dimethylpiperazine-1-carboxylate (0.236 g, 1.102 mmol; eNovation Chemicals LLC, Bridgewater, NJ) was added, and the dark red solution was stirred at RT for 5 min. The reaction mixture was diluted with EtOAc (150 mL), added to a separatory funnel, and washed with saturated, aqueous sodium bicarbonate (2×100 mL); the organic layer was separated, dried over anhydrous Na2SO4, and concentrated in vacuo. The crude product was adsorbed onto silica and was purified via automated flash chromatography (silica gel, 0-80% EtOAc/heptane) to give tert-butyl (2R,5S)-4-(1-(2-bromo-4-isopropyl-6-methylpyrimidin-5-yl)-6-chloro-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (423 mg, 0.603 mmol, 55% yield) as a light yellow solid. 1H NMR (400 MHz, CDCl) δ 8.12 (s, 1H) 7.43-7.50 (m, 1H) 7.17-7.24 (m, 2H) 7.10-7.17 (m, 1H) 3.43-5.04 (m, 6H) 2.61-2.74 (m, 1H) 2.23 (s, 3H) 1.51 (s, 9H) 1.41-1.50 (m, 3H) 1.26-1.28 (m, 3H) 1.22 (d, J=6.8 Hz, 3H) 1.03 (d, J=6.6 Hz, 3H). 19F NMR (377 MHz, CDCl3) δ −112.94 (br s, 1F). MS (ESI, +ve) m/z: 702.0 (M+1)+.
Step 2: 4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-1-(2-bromo-4-isopropyl-6-methylpyrimidin-5-yl)-6-chloro-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-oneA solution of tert-butyl (2R,5S)-4-(1-(2-bromo-4-isopropyl-6-methylpyrimidin-5-yl)-6-chloro-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpipemzine-1-carboxylate (0.101 g, 0.144 mmol) in 2,2,2-trifluoroacetic acid (1.10 mL, 14.4 mmol) was stirred at RT for 10 min. The reaction mixture was concentrated.
A solution of the resulting oil, acryloyl chloride (0.5 M in DCM, 0.317 mL, 0.158 mmol), and DIPEA (0.075 mL, 0.43 mmol) in dichloromethane (0.72 mL) was stirred at RT for 15 min. The reaction mixture was diluted with EtOAc (100 mL), added to a separatory funnel, and washed with saturated, aqueous sodium bicarbonate (2×75 mL); the organic layer was separated, dried over anhydrous Na2SO4, and concentrated in vacuo. The crude product was adsorbed onto silica and was purified via automated flash chromatography (silica gel, 0-80% [(3:1) EtOAc/EtOH]/heptane) to give 4-((2S,5R)-4-acryloyl-2,5-dimethylpiperazin-1-yl)-1-(2-bromo-4-isopropyl-6-methylpyrimidin-5-yl)-6-chloro-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-one (72 mg, 0.11 mmol, 76% yield) as a light yellow solid. 1H NMR (400 MHz, CDCl3) δ 8.12 (s, 1H) 7.42-7.52 (m, 1H) 7.17-7.24 (m, 2H) 7.10-7.17 (m, 1H) 6.48-6.69 (m, 1H) 6.41 (br t, J=15.1 Hz, 1H) 5.77-5.85 (m, 1H) 3.41-5.18 (m, 6H) 2.60-2.75 (m, 1H) 2.19-2.26 (m, 3H) 1.30-1.52 (m, 6H) 1.22 (d, J=6.6 Hz, 3H) 1.04 (d, J=6.8 Hz, 3H). 19F NMR (377 MHz, CDCl3) δ −112.97-−112.88 (m, 1F). MS (ESI, +ve) m/z: 656.0 (M+1)+.
Example 197-2 4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-1-(2-bromo-4-isopropyl-6-methylpyrimidin-5-yl)-6-chloro-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-one, Single IsomerA solution of 1-(2-bromo-4-isopropyl-6-methylpyrimidin-5-yl)-6-chloro-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidine-2,4(1H,3H)-dione (0.525 g, 1.04 mmol: Intermediate 217). phosphoryl trichloride (0.116 mL, 1.25 mmol), and DIPEA (0.725 mL, 4.16 mmol) in acetonitrile (5.2 mL) was stirred at 80° C. for 30 min.
The solution was cooled in an ice bath, then tert-butyl (2R,5S)-2,5-dimethylpiperazine-1-carboxylate (0.223 g, 1.040 mmol; eNovation Chemicals LLC, Bridgewater, NJ) was added, and the dark red solution was stirred at RT for 5 min. The reaction mixture was diluted with EtOAc (150 mL), added to a separatory funnel, and washed with saturated, aqueous sodium bicarbonate (2×100 mL); the organic layer was separated, dried over anhydrous Na2SO4, and concentrated in vacuo. The crude product was adsorbed onto silica and was purified via automated flash chromatography (silica gel, 0-70% EtOAc/heptane) to give tert-butyl (2R,5S)-4-(1-(2-bromo-4-isopropyl-6-methylpyrimidin-5-yl)-6-chloro-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (317 mg, 0.452 mmol, 44% yield). 1H NMR (400 MHz, CDCl3) δ 8.13 (s, 1H) 7.43-7.51 (m, 1H) 7.18-7.24 (m, 2H) 7.11-7.18 (m, 1H) 3.42-5.05 (m, 6H) 2.68 (quin, J=6.8 Hz, 1H) 2.22 (s, 3H) 1.52 (s, 9H) 1.43-1.50 (m, 3H) 1.29 (d, J=6.6 Hz, 3H) 1.24 (d, J=6.6 Hz, 3H) 1.07 (d, J=6.8 Hz, 3H). 19F NMR (377 MHz, CDCl3) δ −112.93 (br s, 1F). MS (ESI, +ve) m/z: 702.0 (M+1)+.
Step 2: 4-((2S,5R)-4-Acryloyl-2,5-dimethylpiperazin-1-yl)-1-(2-bromo-4-isopropyl-6-methylpyrimidin-5-yl)-6-chloro-7-(2-fluorophenyl)pyrido[2,3-d]pyrimidin-2(1H)-oneA solution of tert-butyl (2R,5S)-4-(1-(2-bromo-4-isopropyl-6-methylpyrimidin-5-yl)-6-chloro-7-(2-fluorophenyl)-2-oxo-1,2-dihydropyrido[2,3-d]pyrimidin-4-yl)-2,5-dimethylpiperazine-1-carboxylate (0.043 g, 0.061 mmol) in 2,2,2-trifluoroace