Gel Electrophoresis Patents (Class 204/456)
  • Patent number: 7198703
    Abstract: A multielevational cover for assembling a fluid retaining chamber on a face of an electrophoresis cassette is presented. The cover comprises a cassette-containing member, at least one chamber-defining member, and sealing means, typically sealing means that are capable of reversible attachment. Also presented are methods for contacting cassette-immobilized gels to desired fluids by assembling a fluid retaining chamber upon the cassette using the covers of the present invention.
    Type: Grant
    Filed: June 16, 2004
    Date of Patent: April 3, 2007
    Assignee: Invitrogen Corporation
    Inventors: Regina D. Rooney, Bradley S. Scott, Thomas R. Jackson, Joseph W. Amshey
  • Patent number: 7175750
    Abstract: The present invention relates to a method for determining the presence of a mutation in a first sample comprising first nucleotides. The reference sample comprising reference nucleotides. The first sample and a reference sample are subjected to electrophoresis in the presence of at least one intercalating dye. During electrophoresis the temperature of the first sample and the reference sample is changed by an amount sufficient to change an electrophoretic mobility of at least one of the first or reference nucleotides. Fluorescence intensity data are obtained. The fluorescence intensity data are indicative of the presence of the first and reference nucleotides. At least one of the first sample or reference samples comprises products resulting from a polymerase chain reaction (PCR), the products not having been desalted prior to electrophoresis.
    Type: Grant
    Filed: November 5, 2002
    Date of Patent: February 13, 2007
    Assignee: SpectruMedix LLC
    Inventors: Zhiyong Guo, Zhaowei Liu, Qingbo Li
  • Patent number: 7153405
    Abstract: A gel electrophoresis cassette (33) is disclosed which includes two plates (34, 35) and at least one seal (36) which separates these plates. The seal (36) is annular; it may be positioned essentially in the region of the outer edge of the plates (34, 35). For performing an electrophoresis in a second dimension following an isoelectric focusing in an first dimension, one of the plates (34, 35) includes a recess (37) for inserting a strip holder (1) having a base plate (4), which has a carrier surface (2) on which an IEF strip (3) is accommodated. The base plate (4) includes at least one stop (5) offset to a lower level in relation to the carrier surface (2) and a sealing surface (6). The strip holder (1) is insertable into this recess (37) in such a way that the stop (5) of the base plate (4) is applied to the outer surface of the plate (34, 35) and the sealing surface (6) presses tightly against the inner surface (38) of the recess (37).
    Type: Grant
    Filed: April 9, 2003
    Date of Patent: December 26, 2006
    Assignee: Tecan Trading AG
    Inventors: Nikolaus Ingenhoven, Remo Hoechli, Marcel Rutishauser, Anton Posch
  • Patent number: 7153403
    Abstract: A protein marker pellet for use in a gel electrophoresis system includes one or more protein markers including a protein of known molecular weight with ionic components to provide electrical conductance, and a non-protein, gel-forming material having a porosity sufficient to allow the one or more protein markers to migrate out of the protein marker pellet under the influence of an electrical field at the same rate as the ionic components.
    Type: Grant
    Filed: April 15, 2003
    Date of Patent: December 26, 2006
    Assignee: PageGel, Inc.
    Inventors: William F. Alpenfels, Patricia Marilu Vilalta
  • Patent number: 7141153
    Abstract: pK-matched buffers, each containing two effective buffering components: one weak base and one weak acid which have similar pKa at 25° C. (within 0.3 pK units). On agarose gels, the buffers in various concentrations were tested for separation of double-stranded DNA fragments with various DNA markers, agarose gel concentrations, and field strengths. Mobility was inversely proportional to the logarithm of molecular weight. The buffers provided high resolution without smearing at more dilute concentration than is possible with standard TAE (Tris/Acetate, pH 8.0) or TBE (Tris/Borate, pH 8.3) buffers. The buffers were also tested in 7M urea denaturing LongRanger™ sequencing gels and in non-denaturing polyacrylamide SSCP gels. The pK-matched buffers provide good separation and high resolution, at a broad range of potential pH values.
    Type: Grant
    Filed: May 20, 2003
    Date of Patent: November 28, 2006
    Assignee: City of Hope
    Inventors: Qiang Liu, Steve S. Sommer
  • Patent number: 7122308
    Abstract: Methods and kits for assessing the susceptibility of a patient to antidepressant-induced mania are described. The method involves testing a sample from a patient for the presence of the s variant of the 5HTTLPR polymorphism in the 5HTT gene. The presence of this s variant indicates that the patient is more susceptible to antidepressant-induced mania.
    Type: Grant
    Filed: February 15, 2002
    Date of Patent: October 17, 2006
    Assignee: Centre for Addiction and Mental Health
    Inventors: Emanuela Mundo, James L. Kennedy
  • Patent number: 7122104
    Abstract: The present invention includes apparatus for simultaneous loading of multiple samples for molecular separation, including a separation area with walls wherein at least one of the walls has apertures having loading sites, a gel located within the separation area, and a plurality of wells within the gel. The apertures are connected to the plurality of wells by channels structurally configured to convey samples from the apertures to the wells. The present invention further includes apparatus for electrophoresis separation having a substantially closed electrophoresis area, an electrophoresis gel located within the electrophoresis area, and multiple rows of wells within the electrophoresis gel, wherein the rows are arranged in a stagger format.
    Type: Grant
    Filed: February 24, 2003
    Date of Patent: October 17, 2006
    Assignee: Ethrog Biotechnology, Ltd.
    Inventors: Shmuel Cabilly, Uri Yogev, Ilana Margalit
  • Patent number: 7077940
    Abstract: A strip holder (1) is disclosed for accommodating a gel strip (3) for separating molecules using gel electrophoresis. The strip holder (1) disclosed is distinguished by including a baseplate (4), at least one stop (5), which is offset to a lower level in relation to the carrier surface (2), and at least one sealing surface (6), this stop (5) being implemented to be applied to counter surfaces (7) of an electrophoresis chamber, through which offset to a lower level of the stop (5) the installation depth of the strip holder (1) carrying a gel strip (3) into this electrophoresis chamber is determined and the sealing surface (6) ensuring a sealing installation of the strip holder (1) carrying a gel strip (3) into this electrophoresis chamber. Such a chamber (15) for isoelectric focusing of molecules in gel strips (3) is distinguished by including such a strip holder (1), a frame (16), and a cover (20).
    Type: Grant
    Filed: April 2, 2003
    Date of Patent: July 18, 2006
    Assignee: Tecan Trading AG
    Inventors: Nikolaus Ingenhoven, Remo Hoechli, Marcel Rutishauser, Anton Posch
  • Patent number: 7074310
    Abstract: The invention relates to a process for sorting and separating a mixture of (n, m) type single-wall carbon nanotubes according to (n, m) type. A mixture of (n, m) type single-wall carbon nanotubes is suspended such that the single-wall carbon nanotubes are individually dispersed. The nanotube suspension can be done in a surfactant-water solution and the surfactant surrounding the nanotubes keeps the nanotube isolated and from aggregating with other nanotubes. The nanotube suspension is acidified to protonate a fraction of the nanotubes. An electric field is applied and the protonated nanotubes migrate in the electric fields at different rates dependent on their (n, m) type. Fractions of nanotubes are collected at different fractionation times. The process of protonation, applying an electric field, and fractionation is repeated at increasingly higher pH to separated the (n, m) nanotube mixture into individual (n, m) nanotube fractions.
    Type: Grant
    Filed: March 4, 2003
    Date of Patent: July 11, 2006
    Assignee: William Marsh Rice University
    Inventors: Richard E. Smalley, Robert H. Hauge, W. Carter Kittrell, Ramesh Sivarajan, Michael S. Strano, Sergei M. Bachilo, R. Bruce Weisman
  • Patent number: 7060172
    Abstract: The apparatus includes a container (20) having a base (22) and sides (32) adapted to receive a plurality of plastic gel cassettes. An inlet port (12) is positioned in the base of the container and in fluid communication with the chamber and a baffle (11) is positioned over the inlet port, such that, in use, when gel forming fluid passes through the inlet port into the chamber, the baffle substantially reduces fluid turbulence and vertical fluid movement in the vicinity of the inlet port during flow of the fluid into the chamber. Pretreatment of the plastic cassette to remove polymerisation inhibitors prior to filling the same with fluid is by exhaustive vacuum treatment, optionally with nitrogen gas purging. This can be achieved conveniently using a vacuum chamber in which one or more plastic cassettes are placed. Optionally the vacuum chamber may be the container in which the cassettes are filled with fluid. No barrier films or chemical scavengers are required.
    Type: Grant
    Filed: April 9, 1999
    Date of Patent: June 13, 2006
    Assignee: Life Therapeutics Limited
    Inventors: David Solomon, Grace Chan
  • Patent number: 7005294
    Abstract: The invention suggests a method of producing an array for the detection of components from a biological sample, wherein the detection molecules are immobilized on one or more supports, said support(s) is/are embedded and subjected to curing, the support is separated into sections, and the sections are applied on another support.
    Type: Grant
    Filed: February 27, 2002
    Date of Patent: February 28, 2006
    Assignee: Attomol Moleulare Diagnostika GmbH
    Inventor: Werner Lehmann
  • Patent number: 6995023
    Abstract: The proteins in a biological sample that is sought to be analyzed for its protein composition by an electrophoretic or chromatographic procedure are coupled to a dye in an unusually efficient manner by combining the sample with a solid dry composition containing the dye, a buffering agent, and in preferred embodiments, a denaturing agent as well. The solid and dry form of the composition prevents the dye from deteriorating or decomposing, and the combination of components in the composition allows the dye to couple to the proteins in a relatively uniform manner with no overstaining of the protein when the composition and the sample are heated together and held at an elevated temperature for a short period of time.
    Type: Grant
    Filed: October 21, 2002
    Date of Patent: February 7, 2006
    Assignee: Bio-Rad Laboratories, Inc.
    Inventors: Mingde Zhu, Lee Olech
  • Patent number: 6991714
    Abstract: A sample taking apparatus comprises a plurality of separation tools (10) (for example, punching capillaries) on a holding device (20), wherein the separation tools (10) are each provided with actuating means (30) for separate control thereof. In a sample taking method (for example, for punching samples from separation gels), successively removed samples are deposited in parallel onto a target substrate.
    Type: Grant
    Filed: March 26, 1999
    Date of Patent: January 31, 2006
    Assignee: Max-Planck-Gesellschaft zur Foederung der Wissenschaften e.V.
    Inventors: Christine Gauss, Martin Horn, Markus Kalkum, Holger Eickhoff
  • Patent number: 6986836
    Abstract: An electrophoresis gel is prepared with indicia incorporated into the gel itself rather than on a label or backing that is adhered to the gel. According to one method, the indicia are applied by first coating a solid surface that will be used as one internal surface of a gel mold with a solution of a water-permeable polymer, allowing the coating to dry, imprinting indicia in ink on the dry coating, and then forming the gel over the coating. In a variation on this method, the indicia are applied to a sheet which is then placed against the mold surface, the sheet being either a liner that is separable from the gel yet coated with the polymer or a sheet of the polymer itself. Alternatively, the indicia are printed directly on the mold surface without first coating the surface. This is achieved by using as a printing composition a mixture of an ink and a solution of a water-permeable polymer, then forming the gel over the imprinted indicia.
    Type: Grant
    Filed: April 3, 2003
    Date of Patent: January 17, 2006
    Assignee: Bio-Rad Laboratories, Inc.
    Inventors: Cory M. Panattoni, Donald E. Gueffroy, Roger S. Provost
  • Patent number: 6982029
    Abstract: An electrophoretic system having a plurality of separation lanes is provided with an automatic color calibration feature in which each lane is separately calibrated. For each lane, a dye matrix standard is created using reference fragments which migrate either before, or after, the sample fragments being electrophoresced, during the same electrophoresis run. These dye standards are detected automatically for the purpose of determining coefficients used to identify sample fragments mixed together with the reference fragments. This allows for calibrating the dye standard matrix for each of a plurality of lanes each time the electrophoresis system is used.
    Type: Grant
    Filed: May 7, 2001
    Date of Patent: January 3, 2006
    Assignee: SpectraMedix LLC
    Inventors: Walter R. McVey, Thomas E. Kane
  • Patent number: 6974528
    Abstract: Methods, apparatus and systems are provided for efficient separation of various small and large molecules, especially biomolecules such as proteins, nucleic acids and polysaccharides. In particular, an electrophoresis apparatus is employed in a wide bore electrophoresis of samples in larger amounts than those in conventional capillary electrophoresis. The electrophoresis apparatus comprises: an electrophoresis chamber comprising a cathode, an anode and a housing; and a separation chamber positioned within the housing and comprising an inlet end, an outlet end, and one or more cooling capillaries positioned inside the separation chamber such that the longitudinal axis of at least one of the cooling capillaries is parallel to the direction of electric current flow from the anode to the cathode, wherein the end of the cooling capillary (or capillaries) is adapted to be coupled to a cooling device that allows cooling medium to pass through the cooling capillary.
    Type: Grant
    Filed: July 24, 2002
    Date of Patent: December 13, 2005
    Assignee: Biomics, Inc.
    Inventors: Yaoqing Diana Liu, James Jianmin Bao
  • Patent number: 6969453
    Abstract: An electrophoresis apparatus for processing compounds in small sample volumes comprising a cathode in a static cathode buffer zone or compartment, an anode in a static anode buffer zone or compartment. The cathode disposed relative to the anode so as to be adapted to generate an electric field in an electric field area therebetween upon application of a voltage potential between the cathode and anode. A removable cartridge disposed in the electric field area between the anode and the cathode. The cartridge containing a first non-isoelectric separation barrier and also a second non-isoelectric separation barrier disposed between a selected one of the cathode buffer zone and the anode buffer zone and the first barrier so as to define a first chamber having an interstitial volume of less than 5 ml therebetween.
    Type: Grant
    Filed: April 18, 2001
    Date of Patent: November 29, 2005
    Assignee: Gradipore Limited
    Inventors: David Ogle, Dennis Rylatt
  • Patent number: 6942774
    Abstract: An apparatus for rehydrating and for performing electrophoresis on a gel strip includes a tray defining a plurality of parallel troughs configured to receive gel strips. Each trough defines a centrally located rehydration area and an electrode area disposed either side of the electrode area. End walls delimit the rehydration area of the trough from the electrode area. Electrode means including contact points adapted to contact either the gel strip in the electrode areas near the first and second end of the gel or a conducting or current carrying electrode bridge material which is in contact with the gel strip in the electrode areas. The electrode means are adapted to be connected to a means for supplying an electric current for imposing an electric potential in the strip between the electrodes.
    Type: Grant
    Filed: September 8, 2000
    Date of Patent: September 13, 2005
    Assignee: Proteome Systems, Ltd.
    Inventor: Ben Herbert
  • Patent number: 6942775
    Abstract: A plugging medium is used to block the bottom opening of cassettes for vertical electrophoresis in order to facilitate filling the cassettes with separation media. Cassettes can be filled within a vertical electrophoresis system in which electrophoresis is conducted without further manipulation of the cassettes. The system includes a frame assembly mounted on a base containing a basin for plugging solution. The cassette is mounted to the frame assembly in a substantially vertical position such that a bottom opening of the empty cassette resides below the rim of the basin. The plugging solution (e.g. agarose gel) forms a plug within the bottom of the cassette to contain the separation medium.
    Type: Grant
    Filed: May 24, 2002
    Date of Patent: September 13, 2005
    Assignee: Owl Separation Systems, Inc.
    Inventor: Gregory S. Fox
  • Patent number: 6936150
    Abstract: Methods and apparatus are presented that facilitate electrophoresis of prior-cast, hydratable separation media, usefully immobilized pH gradient (IPG) strips. The method exploits the swelling of prior-cast, hydratable separation media upon rehydration to help lodge the media in an enclosing member that permits spaced electrical communication with the enclosed separation media. The electrical communication permits a voltage gradient to be established in the enclosed separation medium sufficient to effect separation of analytes therein. Cassettes, buffer cores, electrophoresis systems and kits are presented for effecting the methods of the invention.
    Type: Grant
    Filed: March 18, 2002
    Date of Patent: August 30, 2005
    Assignee: Invitrogen Corporation
    Inventors: Regina D. Rooney, Bradley S. Scott, Joseph W. Amshey, Thomas R. Jackson, Sheldon Engelhorn
  • Patent number: 6916423
    Abstract: An apparatus and method for mincing a gel includes a gel mincing tube and a mesh material. The mesh material extends across the end of the tube. To subdivide a gel using the mincing apparatus, a gel is placed upon the mesh material in the mincing tube, the mincing tube, mesh material and the gel are spun in a centrifuge, forcing the gel through the mesh material so that the gel is subdivided into generally uniform smaller fragments. The mesh material may be secured to a tube in the form of a nesting tube. The nesting tube nests within the opening of a recovery vessel. The mesh material may be placed in series with a conditionally porous membrane in the nesting tube. Centrifuging the nesting tube and the recovery vessel subdivides gel material into fragments by forcing the gel through the mesh material. The gel subsequently falls upon the membrane, and may be treated on the membrane to extract or otherwise treat analytes in the gel material.
    Type: Grant
    Filed: July 18, 2001
    Date of Patent: July 12, 2005
    Assignee: Invitrogen Corporation
    Inventors: Roumen A. Bogoev, Scott E. Whitney, Joseph W. Amshey
  • Patent number: 6905584
    Abstract: A method for separating a sample into components by two-dimensional electrophoresis uses an IPG strip, and a gel slab which are spaced apart and carried on a single generally planar support means. The planar support means is first oriented in a generally vertical plane and the first electrophoretic separation medium is oriented in a horizontal plane spaced above or below the second electrophoretic separation medium by a gap. A first dimension separation of a sample mixture in the strip is then carried out while the strip and slab are separated by a non-electrically conducting liquid which is substantially immiscible with water and is non-extractive of water preferably paraffin oil. After the first separation has been carried the support means is tilted so that the first strip is at an angle to the horizontal and the paraffin is flushed out from the gap between the strip and the slab.
    Type: Grant
    Filed: September 28, 2001
    Date of Patent: June 14, 2005
    Assignee: Proteome Systems Limited
    Inventor: Ben Herbert
  • Patent number: 6893546
    Abstract: A method for separating a chemical or biological compound present in a mixture of similar compounds by diffusion in a medium, the method comprising reacting the compounds of the mixture with a component (P) present in the medium to obtain products (Qi), wherein the reactions Ci+P?Qi are reversible and have kinetic constants k1 and k2, and applying to the medium a varying field to which the compounds are sensitive, wherein the period of the field and the concentration of component (P) in the medium are determined from the kinetic constants (k1,k2) of the compound (C) to be separated in order to establish resonance condition between said reactions and the field and for giving compound C an apparent diffusion coefficient (Da) in the medium that is maximum.
    Type: Grant
    Filed: April 24, 2002
    Date of Patent: May 17, 2005
    Assignee: Centre National de la Recherche Scientifique
    Inventors: Ludovic Jullien, Herve Lemarchand, Annie Lemarchand
  • Patent number: 6887668
    Abstract: The invention provides novel electrophoretic methods for high-resolution separation and high-sensitivity detection of nucleic acids. The methods involve the use of a high-resolution buffer and a counter-migrating high-affinity intercalating dye in an electrophoresis system to achieve superior separation and detection of nucleic acids. A kit for separation and detection of nucleic acids in a sample by electrophoresis is also provided. The kit comprises a gel buffer containing a high-resolution intercalating dye with a resolution of at least 2.0 between the 271-bp and 282-bp ?X 171 HAIII nucleic acid fragments nucleic acid fragments; and a high-affinity intercalating dye having a positive charge and DNA affinity constant of at least 106M?1.
    Type: Grant
    Filed: April 19, 2002
    Date of Patent: May 3, 2005
    Assignee: Beckman Coulter, Inc.
    Inventors: Ming-Sun Liu, Fu-Tai-A Chen
  • Patent number: 6872530
    Abstract: The present invention relates to a peptide nucleic acid probe-based method for generating data indicative of the presence of a nucleotide polymorphism, mutation, or methylated cytosine in a nucleotide containing compound. A peptide nucleic acid probe (PNAP) is subjected to temperature gradient electrophoresis in the presence of a nucleotide containing compound. The PNAP is irradiated to generate a spectroscopic signal. The spectroscopic signal is converted into data suitable for determining the presence of the nucleotide polymorphism or the mutation in the nucleotide-containing compound.
    Type: Grant
    Filed: April 24, 2002
    Date of Patent: March 29, 2005
    Assignee: SpectruMedix, LLC
    Inventor: Zhaowei Liu
  • Patent number: 6866760
    Abstract: A two-phase electrophoretic medium comprises a continuous phase and a discontinuous phase. The discontinuous phase comprises a plurality of droplets, each of which comprises a suspending fluid and at least one particle disposed within the suspending fluid and capable of moving through the fluid upon application of an electric field to the electrophoretic medium. The continuous phase surrounds and encapsulates the discontinuous phase. The discontinuous phase comprises at least about 40 percent by volume of the electrophoretic medium.
    Type: Grant
    Filed: February 28, 2002
    Date of Patent: March 15, 2005
    Assignee: E Ink Corporation
    Inventors: Richard J. Paolini Jr., David D. Miller, Barrett Comiskey
  • Patent number: 6855554
    Abstract: Systematic comparisons of breast ductal fluid samples obtained by nipple aspiration from women with unilateral breast cancer revealed significant differences in ductal fluid protein expression between the breast with cancer and the breast without cancer in each patient. This study demonstrates that breast ductal fluid contains over 1000 separate protein species and suggests that ductal fluids from breast cancer patients may be useful for high-throughput biomarker discovery.
    Type: Grant
    Filed: September 5, 2002
    Date of Patent: February 15, 2005
    Assignee: Board of Regents, The University of Texas Systems
    Inventors: Herbert A. Fritsche, Henry M. Kuerer
  • Patent number: 6846399
    Abstract: A polymer material useful as the porous dielectric medium for microfluidic devices generally and electrokinetic pumps in particular. The polymer material is produced from an inverse (water-in-oil) emulsion that creates a 3-dimensional network characterized by small pores and high internal volume, characteristics that are particularly desirable for the dielectric medium for electrokinetic pumps. Further, the material can be cast-to-shape inside a microchannel. The use of bifunctional monomers provides for charge density within the polymer structure sufficient to support electroosmotic flow. The 3-dimensional polymeric material can also be covalently bound to the channel walls thereby making it suitable for high-pressure applications.
    Type: Grant
    Filed: February 28, 2001
    Date of Patent: January 25, 2005
    Assignee: Sandia National Laboratories
    Inventors: Timothy J. Shepodd, Leroy Whinnery, Jr., William R. Even, Jr.
  • Patent number: 6844159
    Abstract: A method for determining improved innate immunity, disease resistance or performance in animals is disclosed. The method involves assays for a genetic differences in the NRAMP1 gene of the animal which is associated with superior disease resistance. Novel NRAMP1 sequence, assays, and compositions for identifying the presence of absence of these alleles are provided.
    Type: Grant
    Filed: May 31, 2002
    Date of Patent: January 18, 2005
    Assignees: Iowa State University Research Foundation, Inc., Pig Inprovement Company UK Limited, The United States of America as represented by the Secretary of Agriculture
    Inventors: Christopher K. Tuggle, Lena Marklund, Thomas J. Stabel, Martha A. Mellencamp, Amber Stumbaugh
  • Patent number: 6841055
    Abstract: A method of preparing an electrophoretic support comprising washing of at least a portion of the surface of a silicon-containing support member supporting an electrophoretic matrix with a weak alkali solution and supporting of said matrix by said support member; an electrophoretic gel comprising a polyacrylamide polymer obtained by polymerizing acrylamide or a derivative thereof in the presence of two or more polar organic solvents; a method of electrophoresis employing a gel prepared by said preparation method; and a method of electrophoresis employing said electrophoretic gel.
    Type: Grant
    Filed: May 11, 2001
    Date of Patent: January 11, 2005
    Assignee: Riken
    Inventor: Yoshihide Hayashizaki
  • Patent number: 6835537
    Abstract: A method for normalizing the intensity of G bands in sequencing methods which utilize dITP is presented. The use of dITP normally results in decreased intensities of G bands which occur after A bands, i.e., in the sequence AG. It has been discovered that the use of ddITP in place of ddGTP or in conjunction with ddGTP helps to normalize the intensity of the G bands following A bands. This aids in preventing errors in reading sequencing chromatograms and allows for extended reads of sequencing chromatograms as compared to methods which utilize dITP without the use of ddITP.
    Type: Grant
    Filed: November 27, 2000
    Date of Patent: December 28, 2004
    Assignee: Myriad Genetics, Inc.
    Inventors: Nadeem Tusneem, Dmitry Pruss, Min-Jui Richard Shen, Satish K. Bhatnagar
  • Publication number: 20040256233
    Abstract: A device for two-dimensional electrophoresis includes a cassette comprising two opposing plates. The two opposing plates form a first elongated portion for receiving a first elongated electrophoretic separation medium and a second portion extending away from the first portion. A second electrophoretic separation medium is on the second portion and between the two opposing plates. A dialysis membrane extends across the second electrophoretic separation medium.
    Type: Application
    Filed: June 17, 2003
    Publication date: December 23, 2004
    Inventor: Bryan Aaron Yonish
  • Patent number: 6833060
    Abstract: The present invention relates generally to the electrophoretic separation of biomolecules, including but not limited to proteins, peptides, DNA and RNA. The methods of this invention are particularly useful when applied to two-dimensional gel electrophoresis.
    Type: Grant
    Filed: May 7, 2001
    Date of Patent: December 21, 2004
    Assignee: University of Louisville Research Foundation, Inc.
    Inventors: George Harding, Elias Klein, Jon Klein
  • Publication number: 20040251135
    Abstract: Various traveling wave grids and electrophoretic systems, and electrode assemblies using such grids, are disclosed. A configuration in which a voltage potential is used to load a biomolecule sample against a grid is disclosed. A unique strategy of using multiple, reconfigurable grids in such systems is also described. The strategy involves initially conducting a broad protein separation and then selectively tailoring one or more grids, and conducting one or more secondary processing operations. Related strategies and specific methods are additionally disclosed for separating samples of biomolecules and components thereof using the noted systems, assemblies, and grids.
    Type: Application
    Filed: June 12, 2003
    Publication date: December 16, 2004
    Applicant: PALO ALTO RESEARCH CENTER INCORPORATED
    Inventors: Meng H. Lean, Huangpin Ben Hsieh, John S. Fitch, Armin R. Volkel, Bryan Preas, Scott Elrod, Richard H. Bruce, Eric Peeters, Frank Torres, Michael Chabinyc
  • Publication number: 20040251139
    Abstract: An electrophoretic cell configuration and related method are disclosed that employ oppositely directed traveling electrical waves. The waves travel across the cell and samples undergoing separation. Various strategies are used to selectively direct the movement and arrangement of the samples and resulting sample patterns.
    Type: Application
    Filed: June 12, 2003
    Publication date: December 16, 2004
    Applicant: PALO ALTO RESEARCH CENTER INCORPORATED
    Inventors: Meng H. Lean, Huangpin Ben Hsieh, John S. Fitch, Armin R. Volkel, Bryan Preas, Scott Elrod, Richard H. Bruce, Eric Peeters, Frank Torres, Michael Chabinyc
  • Publication number: 20040251136
    Abstract: Various gel electrophoretic assemblies and techniques are disclosed for providing unique isoelectric focusing (IEF) strategies. Several particular systems, assemblies and methods are provided that significantly reduce processing time, enable the use of reduced operating voltages, and produce analytical results with improved resolution.
    Type: Application
    Filed: June 12, 2003
    Publication date: December 16, 2004
    Applicant: PALO ALTO RESEARCH CENTER INCORPORATED
    Inventors: Meng H. Lean, Huangpin Ben Hsieh, John S. Fitch, Armin R. Volkel, Bryan Preas, Scott Elrod, Richard H. Bruce, Eric Peeters, Frank Torres, Michael Chabinyc
  • Patent number: 6830670
    Abstract: A medium comprises an electrolyte wherein is dissolved at least an assembly of block copolymers characterized in that the block copolymers: are present in the electrolyte at a concentration level to provide the medium with the property of reversibly passing from a state of viscosity V1, obtained at a temperature T1, to a viscosity state V2 greater by at least 100% than V1, obtained at a temperature T2, and comprise in their structure at least: two non-contiguous polymeric segments having in the electrolyte a lower critical solubility temperature (LCST) and having an average number of atoms along their skeleton more than 50; and a polymeric segment soluble in the electrolyte at temperatures T1 and T2. The invention also concerns the use of the medium for separating analytes.
    Type: Grant
    Filed: October 1, 2001
    Date of Patent: December 14, 2004
    Assignees: Institut Curie, Centre National de la Recherche Scientifique (C.N.R.S.), Universite Pierre et Marie Curie-Paris VI
    Inventors: Jean-Louis Viovy, Dominique Hourdet, Jan Sudor
  • Publication number: 20040245103
    Abstract: The present invention relates to an electrophoretic device in the form of a casing having inside sealed spaces isolated by an electrophoretic carrier, wherein the device comprises at least one liquid injection/discharge opening, communicable with the outside, on the outer wall of said sealed spaces, and an electrophoretic method and a specimen detection method using the device. Additionally, the present invention relates to an electrophoresis apparatus having a structure for sandwiching the electrophoretic carrier between a pair of electrodes, and having a space capable of holding liquid between the sandwiched electrophoretic carrier and the respective electrodes, and to an electrophoretic method using the same device.
    Type: Application
    Filed: March 26, 2004
    Publication date: December 9, 2004
    Inventors: Teruta Ishimaru, Chiho Itou, Tadanobu Ikeda, Takashi Akita, Osamu Maehara, Haruko Miyauchi
  • Patent number: 6821402
    Abstract: The invention relates to methods, compositions, and systems for calibrating a fluorescent polynucleotide separation apparatus. One aspect of the invention is multiple color calibration standards and their use. A multiple color calibration standard is a mixture of at least two polynucleotides of different length, wherein each of the polynucleotides is labeled with a spectrally distinct fluorescent dye. Another aspect of the invention is to produce total emission temporal profiles of multiple color calibration standards for use in calibrating fluorescent polynucleotide separation apparatus. The peaks corresponding to the fluorescently labeled polynucleotides in the total emission temporal profile may be detected using a peak detector that is driven by changes in the slopes of the total emission temporal profile.
    Type: Grant
    Filed: September 16, 1998
    Date of Patent: November 23, 2004
    Assignee: Applera Corporation
    Inventors: Muhammad A. Sharaf, Maria C. Roque-Biewer
  • Publication number: 20040222096
    Abstract: A method for separating a sample into components by two-dimensional electrophoresis uses an IPG strip, and a gel slab which are spaced apart and carried on a single generally planar support means. The planar support means is first oriented in a generally vertical plane and the first electrophoretic separation medium is oriented in a horizontal plane spaced above or below the second electrophoretic separation medium by a gap. A first dimension separation of a sample mixture in the strip is then carried out while the strip and slab are separated by a non-electrically conducting liquid which is substantially immiscible with water and is non-extractive of water preferably paraffin oil. After the first separation has been carried the support means is tilted so that the first strip is at an angle to the horizontal and the paraffin is flushed out from the gap between the strip and the slab.
    Type: Application
    Filed: April 29, 2004
    Publication date: November 11, 2004
    Inventor: Ben Herbert
  • Patent number: 6816259
    Abstract: A system for automated excision of one or more samples from a sample media, including by using a device for electronically capturing one or more traits of samples in the media, using a microprocessor linked to the device to analyze the captured traits by comparison to reference databases, identifying samples of interest at location coordinates in the sample media, and automatically excising and processing the samples through the use of a novel robotic excision tool.
    Type: Grant
    Filed: January 17, 2002
    Date of Patent: November 9, 2004
    Inventors: Kevin Auton, Paul Thomas Ryan, David Byatt
  • Patent number: 6812033
    Abstract: The invention provides a method for identifying patients with normal NCEP lipid levels who are in need of treatment for cardiovascular disease comprising measuring one or more LDL or HDL particle subclass levels and identifying abnormal LDL or HDL subclass levels.
    Type: Grant
    Filed: April 12, 2002
    Date of Patent: November 2, 2004
    Assignee: Berkeley HeartLab, Inc.
    Inventors: David Shewmake, Frank Ruderman, Christopher Boggess
  • Patent number: 6800184
    Abstract: A system for separating biomolecules by electrophoretic separation including a first separation barrier having a defined molecular mass cut-off disposed in the first electric field area, a first restriction barrier disposed between a first cathode zone and a first separation barrier so as to define a first interstitial volume therebetween, a second restriction barrier disposed between the first anode zone and the first separation barrier so as to define a second interstitial volume therebetween, and a pumping means to provide a sample constituent in a selected one of the first interstitial and second interstitial volumes wherein upon application of the first voltage potential, a selected separation product is removed from the sample constituent through the first separation barrier and provided to the other of the first and second interstitial volumes.
    Type: Grant
    Filed: April 18, 2001
    Date of Patent: October 5, 2004
    Assignee: Gradipore, Limited
    Inventors: Brendon Francis Conlan, Andrew Mark Gilbert, Chenicheri Hariharan Nair, Lucy Jane Ryan, Dennis Brian Rylatt, Theresa Marie Thomas
  • Publication number: 20040188256
    Abstract: An apparatus for reverse iontophoresis has a base, an electrode provided on the base, an electrolytic gel provided on the electrode adapted for contacting a first part of a specimen, and for extracting a molecule from a first part of the specimen, a sensor chip placed underneath the electrolytic gel and having a pigment membrane containing a pigment that changes color by reaction with the molecule, a light source irradiating light on the pigment membrane, and a light sensor receiving a reflection of the light from the pigment membrane
    Type: Application
    Filed: October 23, 2003
    Publication date: September 30, 2004
    Applicant: Kabushiki Kaisha Toshiba
    Inventor: Mitsuhiro Nishio
  • Patent number: 6789022
    Abstract: Disclosed is a method for detecting and quantifying clustered damages in DNA. In this method, a first aliquot of the DNA to be tested for clustered damages with one or more lesion-specific cleaving reagents under conditions appropriate for cleavage of the DNA to produce single-strand nicks in the DNA at sites of damage lesions. The number average molecular length (Ln) of double stranded DNA is then quantitatively determined for the treated DNA. The number average molecular length (Ln) of double stranded DNA is also quantitatively determined for a second, untreated aliquot of the DNA. The frequency of clustered damages (&PHgr;c) in the DNA is then calculated.
    Type: Grant
    Filed: April 18, 2001
    Date of Patent: September 7, 2004
    Assignee: Brookhaven Science Associates LLC
    Inventor: Betsy M. Sutherland
  • Publication number: 20040168919
    Abstract: An electrophoresis instrument for analyzing multiple samples having a loading system. The loading system having a carriage moveable between an external station and a sampling station. The carriage having at least one tray upon the carriage. The sampling station being adapted for sampling the tray by an array of capillary tubes.
    Type: Application
    Filed: February 27, 2003
    Publication date: September 2, 2004
    Applicant: CombiSep, Inc.
    Inventors: Thomas J. Kurt, Kevin C. Kennedy
  • Patent number: 6761810
    Abstract: An automated assembly for performing first dimension electrophoresis is described herein that includes a supply magazine, an electrophoresis tank and an automated transferring device that robotically transfers biological samples from sample vials retained in the supply magazine, and delivers the biological samples one by one to tube gels supported in a rack within the electrophoresis tank. The transferring device is configured to move in three dimensions with respect to the supply magazine and the rack for flexible sample delivery.
    Type: Grant
    Filed: March 9, 2001
    Date of Patent: July 13, 2004
    Assignee: Large Scale Proteomics Corp.
    Inventors: Andrew McGrath, N. Leigh Anderson, Jack Goodman
  • Patent number: 6758974
    Abstract: An apparatus and method for mincing a gel includes a gel mincing tube and a mesh material. The mesh material extends across the end of the tube. To subdivide a gel using the mincing apparatus, a gel is placed upon the mesh material in the mincing tube, the mincing tube, mesh material and the gel are spun in a centrifuge, forcing the gel through the mesh material so that the gel is subdivided into generally uniform smaller fragments. The mesh material may be secured to a tube in the form of a nesting tube. The nesting tube nests within the opening of a recovery vessel. The mesh material may be placed in series with a conditionally porous membrane in the nesting tube. Centrifuging the nesting tube and the recovery vessel subdivides gel material into fragments by forcing the gel through the mesh material. The gel subsequently falls upon the membrane, and may be treated on the membrane to extract or otherwise treat analytes in the gel material.
    Type: Grant
    Filed: July 18, 2001
    Date of Patent: July 6, 2004
    Assignee: Invitrogen Corporation
    Inventors: Roumen A. Bogoev, Scott E. Whitney, Joseph W. Amshey
  • Publication number: 20040101973
    Abstract: The invention relates to a medium for analytic and preparative electrophoresis comprising a content of acids and bases of different pKS values. Said medium contains at least two acids, whose pKS values (&Dgr;pKS) of adjacent acids are no greater than 1.0 but preferably range from 0.8 to 0.5, and contains at least two bases, whose pKS values range from approximately 1.5 to 11, whereby the difference of the pKS values (&Dgr;pKS) of adjacent bases is no greater than 1.0 but preferably ranges from 0.8 to 0.5.
    Type: Application
    Filed: April 1, 2003
    Publication date: May 27, 2004
    Inventor: Gerhard Weber
  • Patent number: RE39293
    Abstract: A method for separating components from plasma, the method comprising (I) separating the plasma into a first and second component, the first component comprising an albumin/?-1-antirypsin pool and the second component comprising plasma containing components having a molecular mass greater than albumin; (II) treating the second component to form an immunoglobulins concentrate containing immunoglobulins substantially free from components having a molecular mass less than immunoglobulins; (III) treating the immunoglobulins concentrate to remove components having a molecular mass greater than immunoglobulins; and (IV) separating albumin and ?-1-antitrypsin from the albumin/?-1-antitrypsin pool.
    Type: Grant
    Filed: August 1, 2003
    Date of Patent: September 19, 2006
    Assignee: Life Therapeutics Limited
    Inventors: Andrew Mark Gilbert, Brendon Conlan, Chenicheri Hariharam Nair