Nucleotide Patents (Class 435/89)
  • Patent number: 7329522
    Abstract: This invention relates to a novel polyphosphate: AMP phosphotransferase (PAP), a gene coding this PAP, and their use. The PAP has the following properties: (A) action: catalyzing of the following two reactions: NMP+PolyP(n)?NDP+PolyP(n-1) dNMP+POlyP(n)?dNDP+PolyP(n-1) (wherein NMP represents nucleoside monophosphate, NDP represents nucleoside diphosphate, dNMP represents deoxynucleoside monophosphate, dNDP represents deoxynucleoside diphosphate, n represents degree of polymerization of the polyphosphate which is an integer of up to 100); (B) substrate specificity: specific to AMP, GMP, IMP, dAMP, and dGMP, also acting with CMP, UMP, dCMP, and TMP; (C) molecular weight: about 55 to 56 Kd (kilodalton); and (D) specific activity: at least 70 units per 1 mg of enzyme protein.
    Type: Grant
    Filed: May 28, 2003
    Date of Patent: February 12, 2008
    Assignee: Yamasa Corporation
    Inventors: Toshikazu Shiba, Toshitada Noguchi
  • Patent number: 7326546
    Abstract: A purine-derived substance is produced by culturing a Bacillus bacterium which has an ability to produce a purine-derived substance and has enhanced activity of an enzyme of the oxidative pentosephosphate pathway. The purine-derived substance is produced in the medium or the bacterial cells, and can be collected from the medium or the bacterial cells.
    Type: Grant
    Filed: March 9, 2006
    Date of Patent: February 5, 2008
    Assignee: Ajinomoto Co., Inc.
    Inventors: Kiyoshi Matsuno, Yukiko Mori, Takayuki Asahara
  • Patent number: 7270980
    Abstract: Compounds and methods for diagnosing prostate cancer are provided. The inventive compounds include polypeptides containing at least a portion of a prostate tumor protein. The inventive polypeptides may be used to generate antibodies useful for the diagnosis and monitoring of prostate cancer. Nucleic acid sequences for preparing probes, primers, and polypeptides are also provided.
    Type: Grant
    Filed: January 15, 1999
    Date of Patent: September 18, 2007
    Assignee: Corixa Corporation
    Inventors: Jiangchun Xu, Davin C. Dillon, Jennifer Lynn Mitcham
  • Patent number: 7241587
    Abstract: The invention provides methods for producing products comprising improved host cells genetically engineered to have uncoupled productive and catabolic pathways. In particular, the present invention provides host cells having a modification in nucleic acid encoding an endogenous enzymatic activity that phosphorylates D-glucose at its 6th carbon and/or a modification of nucleic acid encoding an enzymatic activity that phosphorylates D-gluconate at its 6th carbon. Such improved host cells are used for the production of products, such as, ascorbic acid intermediates. Methods for making and using the improved host cells are provided. Nucleic acid and amino acid sequences for glucokinase and gluconokinase are provided.
    Type: Grant
    Filed: April 4, 2002
    Date of Patent: July 10, 2007
    Assignee: Genencor International, Inc.
    Inventors: Timothy C. Dodge, Fernando Valle
  • Patent number: 7238338
    Abstract: Disclosed are methods for manufacturing radiohalogen-labeled steroids, nucleosides, nucleotides and proteins, for example, pyrimidines and proteins. Methods according to the example embodiments specific to pyrimidines includes dissolving a halogenated pyrimidine to obtain an initial solution, adding bis(tributyltin) and triphenylphosphine palladium to produce a catalyzed solution, heating the catalyzed solution under conditions sufficient to induce a reaction that produces an intermediate solution including a stannylated pyrimidine compound, removing substantially all of the first solvent from the intermediate solution to obtain an intermediate composition, purifying the resulting solution to obtain a purified composition including a stannylated pyrimidine, reacting the stannylated pyrimidine compound with a radiohalogen in a buffered reaction mixture to produce the radiohalogenated pyrimidine, adding an antioxidant and extracting the radiohalogenated pyrimidine from the reaction mixture.
    Type: Grant
    Filed: June 20, 2002
    Date of Patent: July 3, 2007
    Assignee: Triumf
    Inventor: Jianming Lu
  • Patent number: 7189542
    Abstract: A method for generating a Drosophila clipped FRT (cFRT) chromosome is provided, wherein the chromosome is insensitive to a P transposase but remains functional to a yeast site-specific flippase recombinase (FLP). The method includes steps of: (a) exposing a FRT chromosome to the P transposase for occurring a local and imprecise transposition, wherein the FRT chromosome contains a P[FRT] insertion with a selection marker gene, (b) screening the P[FRT] insertion insensitive to the P transposase to obtain screened products, (c) selecting candidate products from the screened products by further examinations, and (d) exposing the candidate products by the P transposase and selecting a desired product by the further examinations to obtain the Drosophila clipped FRT (cFRT) chromosome insensitive to the P transposase but remaining functional to the yeast site-specific flippase recombinase. The cFRT2L2R chromosome can be used as the direct target in the direct P-transposon-induced mutagenesis.
    Type: Grant
    Filed: October 20, 2003
    Date of Patent: March 13, 2007
    Inventor: Tze-Bin Chou
  • Patent number: 7148042
    Abstract: A glyoxal-guanosine-group compound is prepared either by reacting glyoxal-guanine with any one of ribose-1-phosphate and 2-deoxyribose-1-phosphate in the presence of purine nucleoside phosphorylase, or by reacting glyoxal-guanine with any one selected from the group consisting of uridine, 2?-deoxyuridine and thymidine, together with phosphate ion, in the presence of purine nucleoside phosphorylase and pyrimidine nucleoside phosphorylase. The glyoxal-guanosine-group compound is then decomposed by alkali, whereby a guanosine-group compound consisting of guanosine and 2?-deoxyguanosine is prepared.
    Type: Grant
    Filed: July 8, 2003
    Date of Patent: December 12, 2006
    Assignee: Yuki Gosei Kogyo Co., Ltd.
    Inventors: Yoichi Mikami, Seiichiro Matsumoto, Yoshinori Hayashi, Toyoki Sato
  • Patent number: 7141397
    Abstract: A glyoxal-guanosine-group compound is prepared either by reacting glyoxal-guanine with any one of ribose-1-phosphate and 2-deoxyribose-1-phosphate in the presence of purine nucleoside phosphorylase, or by reacting glyoxal-guanine with any one selected from the group consisting of uridine, 2?-deoxyuridine and thymidine, together with phosphate ion, in the presence of purine nucleoside phosphorylase and pyrimidine nucleoside phosphorylase. The glyoxal-guanosine-group compound is then decomposed by alkali, whereby a guanosine-group compound consisting of guanosine and 2?-deoxyguanosine is prepared.
    Type: Grant
    Filed: July 8, 2003
    Date of Patent: November 28, 2006
    Assignee: Yuki Gosei Kogyo Co., Ltd.
    Inventors: Yoichi Mikami, Seiichiro Matsumoto, Yoshinori Hayashi, Toyoki Sato
  • Patent number: 7141396
    Abstract: A glyoxal-guanosine-group compound is prepared either by reacting glyoxal-guanine with any one of ribose-1-phosphate and 2-deoxyribose-1-phosphate in the presence of purine nucleoside phosphorylase, or by reacting glyoxal-guanine with any one selected from the group consisting of uridine, 2?-deoxyuridine and thymidine, together with phosphate ion, in the presence of purine nucleoside phosphorylase and pyrimidine nucleoside phosphorylase. The glyoxal-guanosine-group compound is then decomposed by alkali, whereby a guanosine-group compound consisting of guanosine and 2?-deoxyguanosine is prepared.
    Type: Grant
    Filed: July 8, 2003
    Date of Patent: November 28, 2006
    Assignee: Yuki Gosei Kogyo Co., Ltd.
    Inventors: Yoichi Mikami, Seiichiro Matsumoto, Yoshinori Hayashi, Toyoki Sato
  • Patent number: 7084264
    Abstract: An isolated nucleic acid comprising the nucleotide sequence of SEQ ID NO:1, or the full complementary sequence thereof. Presence of said nucleic acid in a subject predisposes the subject to an adenocarcinoma. Also disclosed are a method of diagnosing an adenocarcinoma.
    Type: Grant
    Filed: June 30, 2004
    Date of Patent: August 1, 2006
    Inventor: Chau-Ting Yeh
  • Patent number: 7038039
    Abstract: A desired isomer is selectively prepared by phosphorolyzing and isomerizing an anomer mixture of a 1-phosphorylated saccharide derivative while crystallizing one of the isomers to displace the equilibrium. Furthermore, using the action of a nucleoside phosphorylase, a nucleoside is prepared from the 1-phosphorylated saccharide derivative obtained and a base with improved stereoselectivity and a higher yield. This process is an anomer-selective process for preparing a 1-phosphorylated saccharide derivative and a nucleoside.
    Type: Grant
    Filed: February 13, 2001
    Date of Patent: May 2, 2006
    Assignee: Mitsui Chemicals, Inc.
    Inventors: Hironori Komatsu, Hirokazu Awano, Nobuyuki Fukazawa, Kiyoshi Ito, Ichirou Ikeda, Tadashi Araki, Takeshi Nakamura, Tamotsu Asano, Junya Fujiwara, Tomoyuki Ando, Katsutoshi Tsuchiya, Kyoko Maruyama, Hideki Umetani, Takahiro Yamauchi, Hitoki Miyake
  • Patent number: 6991924
    Abstract: L-arginine, citrulline and pyrimidine derivatives including orotic acid, uridine, uridine 5?-monophosphate (UMP), cytidine and cytidine 5?-monophosphate (CMP) are produced using a bacterium belonging to the genus Escherichia harboring a mutant carbamoylphosphate synthetase in which the amino acid sequence corresponding to positions from 947 to 951 in a wild type carbamoylphosphate synthetase is replaced with any one of amino acid sequences of SEQ ID NOS: 1 to 9, and feedback inhibition by uridine 5?-monophosphate in the bacterium is desensitized.
    Type: Grant
    Filed: August 2, 2002
    Date of Patent: January 31, 2006
    Assignee: Ajinomoto Co., Inc.
    Inventors: Leonid Romanovich Ptitsyn, Sergey Vasil'evich Smirnov, Irina Borisovna Altman, Anna Eugenievna Novikova, Veronika Aleksandrovna Kotliarova, Mikhail Markovich Gusyatiner, Yulia Georgievna Rostova, Tatyana Abramovna Yampolskaya
  • Patent number: 6987008
    Abstract: There is provided a mutant nucleoside-5?-phosphate producing enzyme with improved nucleoside-5?-phosphate producing ability of a nucleoside-5?-phosphate producing enzyme that has transphosphorylation activity and/or phosphatase activity and has one Lys residue, two Arg residues and two His residues with distances between their C?'s within a particular ranges and a space around them allowing a binding of a nucleoside, of which mutation is designed by using the crystal structure of EB-AP.
    Type: Grant
    Filed: September 1, 2000
    Date of Patent: January 17, 2006
    Assignee: Ajinomoto Co., Inc.
    Inventors: Kohki Ishikawa, Ei-ichiro Suzuki, Keiko Gondoh, Nobuhisa Shimba, Yasuhiro Mihara, Hisashi Kawasaki, Osamu Kurahashi, Tohru Kouda, Megumi Shimaoka, Rie Kozutsumi, Yasuhisa Asano
  • Patent number: 6962804
    Abstract: A method for generating a Drosophila clipped FRT (cFRT) chromosome is provided, wherein the chromosome is incapable of reacting with a P transposase but remains capable of reacting with a yeast site-specific flippase recombinase (FLP). The method includes steps of: (a) exposing a FRT chromosome to the P transposase causing a local and imprecise transposition, wherein the FRT chromosome contains a P[FRT] insertion with a selection marker gene, (b) screening the P[FRT] insertion insensitive to the P transposase to obtain screened products, (c) selecting candidate products from the screened products by further examinations, and (d) exposing the candidate products by the P transposase and selecting a desired product by the further examinations to obtain the Drosophila clipped FRT (cFRT) chromosome incapable of reacting with the P transposase but remaining capable of reacting with the yeast site-specific flippase recombinase.
    Type: Grant
    Filed: January 10, 2002
    Date of Patent: November 8, 2005
    Assignee: National Science Council
    Inventor: Tze-Bin Chou
  • Patent number: 6955892
    Abstract: Embodiments of the present invention generally relate to novel fed-batch fermentations wherein processes of DO-stat and pH-stat are combined for nutrient feeding control.
    Type: Grant
    Filed: November 12, 2002
    Date of Patent: October 18, 2005
    Assignee: Akzo Nobel N.V.
    Inventors: WengLong Roy Lin, Firoz Rustom Mistry, Arun Narayanaswamy Tholudur, Edward Todd Sorensen, Wan-Seop Kim, Dana Perrin
  • Patent number: 6916616
    Abstract: The invention concerns stable aqueous solutions containing one or several nucleoside triphosphates wherein the respective solution has a pH value of more than 7.5 and contains no additional substances with a stabilizing effect. The nucleoside triphosphate solutions are used in particular for DNA synthesizing reactions such as e.g. RT-PCR, cycle sequencing, random priming and nick translation. One of the most important applications of such solutions containing deoxy-nucleoside triphosphates (d-NTP) is their use in the polymerase chain reaction (PCR).
    Type: Grant
    Filed: December 19, 2001
    Date of Patent: July 12, 2005
    Assignee: Roche Diagnostics GmbH
    Inventors: Hans-Georg Ihlenfeldt, Axel Schmidt, Klaus Muhlegger, Volker Leitenberger
  • Patent number: 6906185
    Abstract: Derivatives of 7-deaza-2?-deoxyguanosine are described. Also described is the use of such compounds in synthesis of nucleic acid polymers and in methods for determining a nucleotide base sequence.
    Type: Grant
    Filed: March 20, 1998
    Date of Patent: June 14, 2005
    Assignee: Amersham Biosciences Corp.
    Inventors: Carl W. Fuller, Mark McDougall, Shiv Kumar
  • Patent number: 6884880
    Abstract: A process for substantially enhancing the regio and stereoselective synthesis of 9-?-anomeric nucleoside analogs is described. The introduction of the sugar moiety onto a 6-substituted purine base was preformed so that only the 9-?-D- or L-purine nucleoside analogs were obtained. This regio and stereoselective introduction of the sugar moiety allows the synthesis of nucleoside analogs and in particular 2?-deoxy, 3?-deoxy, 2?-deoxy-2?-?-fluoro and 2?,3?-dideoxy-2?-?-fluoro purine nucleoside analogs in high yield without virtually any formation of the 7-positional isomers. The compounds are drugs or intermediates to drugs.
    Type: Grant
    Filed: August 21, 2002
    Date of Patent: April 26, 2005
    Assignee: Ash Stevens, Inc.
    Inventors: Pranab K. Gupta, Stephen A. Munk
  • Patent number: 6884604
    Abstract: The present invention provides combinatorial methods for rapidly generating a diverse library of glycorandomized structures, comprising incubating one or more aglycons and a pool of NDP-sugars in the presence of a glycosyltransferase. The glycosyltransferase may be one that is associated with or involved in production of natural secondary metabolites, or one which is putatively associated with or involved in production of natural secondary metabolites. The glycosyltransferase may show significant flexibility with respect to its NDP-sugar donors and/or its aglycons. NDP-sugar donors may be commercially available, or may be produced by utilizing mutant or wild type nucleotidyltransferases significant flexibility with respect to their substrates.
    Type: Grant
    Filed: April 1, 2002
    Date of Patent: April 26, 2005
    Assignee: Sloan-Kettering Institute for Cancer Research
    Inventor: Jon S. Thorson
  • Patent number: 6875591
    Abstract: Processes for producing GDP-fucose, comprising allowing GKDM and a culture broth of a microorganism capable of converting GKDM into GDP-fucose to be present in an aqueous medium, forming and accumulating GDP-fucose therein, and recovering the GDP-fucose therefrom; or comprising allowing a GTP precursor, a saccharide, a culture broth of a microorganism capable of forming GTP from a GTP precursor, and a culture broth of a microorganism capable of forming GKDM from a saccharide and GTP to be present in an aqueous medium, forming and accumulating GKDM therein, converting the accumulated GKDM into GDP-fucose using as a culture broth of a microorganism capable of converting GKDM into GDP-fucose to form and accumulate GDP-fucose therein, and recovering the GDP-fucose therefrom; and a process for producing GKDM, comprising allowing a GTP precursor, a saccharide, a culture broth of a microorganism capable of forming GTP from a GTP precursor, and a culture broth of a microorganism capable forming GKDM from a saccharide
    Type: Grant
    Filed: August 3, 2000
    Date of Patent: April 5, 2005
    Assignee: Kyowa, Hakko Kogyo Co., Ltd.
    Inventors: Satoshi Koizumi, Hiroshi Nagano, Tetsuo Endo, Kazuhiko Tabata, Akio Ozaki
  • Patent number: 6872818
    Abstract: The present invention provides RNA purification and/or analysis methods that use ammonium sulfate to mitigate or neutralize inhibitory effects of certain molecules. Exemplary inhibitory molecules that interfere with RNA function or analysis are those that bind to or cleave RNA, or stabilize RNA secondary structures.
    Type: Grant
    Filed: January 25, 2002
    Date of Patent: March 29, 2005
    Assignee: QIAGEN GmbH
    Inventors: Christian Korfhage, Ralf Wyrich, Uwe Oelmüller
  • Patent number: 6858721
    Abstract: The invention provides a method for producing a cytosine nucleoside compound from pentose-1-phosphate and cytosine or a derivative thereof using a nucleoside phosphorylase reactive to cytosine or a bacterium having the enzyme activity. The invention also provides a method for specifically reducing an activity to degrade the substrates or the product, resulting in efficient production of the cytosine nucleoside compound. According to the invention, little by-product is produced in producing cytonucleocide compounds.
    Type: Grant
    Filed: April 30, 2002
    Date of Patent: February 22, 2005
    Assignee: Mitsui Chemicals, Inc.
    Inventors: Tadashi Araki, Ichirou Ikeda, Kaori Matoishi, Reiko Abe, Toshihiro Oikawa, Yasuko Matsuba, Hiroki Ishibashi, Kiyoteru Nagahara, Yasushi Fukuiri
  • Patent number: 6855520
    Abstract: The present invention relates to the cloning and characterization of a human serine/threonine kinase (h-sgk: serum and glucocorticoid dependent kinase). The invention furthermore relates to reagents for diagnosing conditions associated with a change in cell volume and/or in “macromolecular crowding” in the body, such as, for example, hypernatremia, hyponatremia, diabetes mellitus, renal failure, hypercatabolism, hepatic encephalopathy, inflammation and microbial or viral infections. The present invention additionally relates to pharmaceuticals comprising the h-sgk, nucleic acids which code for the h-sgk, or receptors, in particular antibodies, which specifically bind to the h-sgk.
    Type: Grant
    Filed: December 4, 2001
    Date of Patent: February 15, 2005
    Inventors: Florian Lang, Siegfried Waldegger
  • Publication number: 20040259212
    Abstract: Purine nucleotides are produced by culturing a microorganism having the ability to produce a precursor of the purine nucleotide and carrying an introduced DNA which can express an enzyme capable of synthesizing the purine nucleotide from the precursor upon induction; allowing the purine nucleotide precursor to accumulate in the culture; inducing the expression of the enzyme; allowing the purine nucleotide formed to accumulate in the culture; and recovering the purine nucleotide. Suitable microorganisms include Corynebacterium ammoniagenes which are induced to express GMP synthetase/XMP aminase and inosine-guanosine kinase for use in producing IMP and GMP, especially from the nucleotide precursor XMP.
    Type: Application
    Filed: August 4, 2003
    Publication date: December 23, 2004
    Applicant: KYOWA HAKKO KOGYO CO., LTD
    Inventors: Yutaka Takano, Masato Ikeda, Tatsuro Fujio
  • Publication number: 20040248263
    Abstract: The present invention provides a novel process for preparing nicotinamide adenine dinucleotide phosphate (NADP). The process of the present invention comprises performing phosphorylation using a polyphosphoric acid or a salt thereof and nicotinamide adenine dinucleotide (NAD+) as substrates in the presence of a polyphosphate-dependent NAD+ kinase from a Mycobacterium, wherein the reaction solution contains 0.1-15% by weight of the polyphosphoric acid or a salt thereof, and 5-150 mM of a divalent metal ion.
    Type: Application
    Filed: July 20, 2004
    Publication date: December 9, 2004
    Inventors: Shigeyuki Kawai, Kousaku Murata, Shoichi Tomisako, Yoshio Ando, Yuhsi Matsuo
  • Publication number: 20040235120
    Abstract: The present invention relates to a process for preparing vitamin B12 using Bacillus megaterium.
    Type: Application
    Filed: February 19, 2004
    Publication date: November 25, 2004
    Inventors: Andreas Kunkel, Jan-Henning Martens, Dieter Jahn, Heiko Barg, Martin Warren
  • Patent number: 6821756
    Abstract: This invention relates to a process for producing a sugar nucleotide, in which a) a culture broth of a microorganism capable of producing NTP from a nucleotide precursor, or a treated product of the culture broth, and b) a culture broth of a microorganism capable of producing a sugar nucleotide from a sugar and NTP, or a treated product of the culture broth, are used as enzyme sources; a process for producing a complex carbohydrate, in which the above-described a) and b) and c) a culture broth of a microorganism, an animal cell or an insect cell capable of producing a complex carbohydrate from a sugar nucleotide and a complex carbohydrate precursor, or a treated product of the culture broth, are used as enzyme sources; a process for producing a complex carbohydrate, in which a culture broth of a microorganism, an animal cell or an insect cell capable of producing a complex carbohydrate from a sugar nucleotide and a complex carbohydrate precursor, or a treated product of the culture broth, is as an enzyme sour
    Type: Grant
    Filed: May 13, 1998
    Date of Patent: November 23, 2004
    Assignee: Kyowa Hakko Kogyo Co., Ltd.
    Inventors: Satoshi Koizumi, Katsutoshi Sasaki, Tetsuo Endo, Kazuhiko Tabata, Akio Ozaki
  • Publication number: 20040229263
    Abstract: This invention provides prokaryotic glycosyltransferases, including a bifunctional sialyltransferase that has both an &agr;2,3- and an &agr;2,8-activity. A &bgr;1,4-GalNAc transferase and a &bgr;1,3-galactosyltransferase are also provided by the invention, as are other glycosyltransferases and enzymes involved in synthesis of lipooligosaccharide (LOS). The glycosyltransferases can be obtained from, for example, Campylobacter species, including C. jejuni. In additional embodiments, the invention provides nucleic acids that encode the glycosyltransferases, as well as expression vectors and host cells for expressing the glycosyltransferases.
    Type: Application
    Filed: April 8, 2004
    Publication date: November 18, 2004
    Applicant: National Research Council of Canada
    Inventors: Michel Gilbert, Warren W. Wakarchuk
  • Publication number: 20040229272
    Abstract: This invention provides prokaryotic glycosyltransferases, including a bifunctional sialyltransferase that has both an &agr;2,3- and an &agr;2,8-activity. A &bgr;1,4-GalNAc transferase and a &bgr;1,3-galactosyltransferase are also provided by the invention, as are other glycosyltransferases and enzymes involved in synthesis of lipooligosaccharide (LOS). The glycosyltransferases can be obtained from, for example, Campylobacter species, including C. jejuni. In additional embodiments, the invention provides nucleic acids that encode the glycosyltransferases, as well as expression vectors and host cells for expressing the glycosyltransferases.
    Type: Application
    Filed: May 17, 2004
    Publication date: November 18, 2004
    Applicant: National Research Council of Canada
    Inventors: Michel Gilbert, Warren W. Wakarchuk
  • Patent number: 6818394
    Abstract: Processes and kits for immobilizing a high density of nucleic acids on an insoluble surface, which are particularly useful for mass spectrometric detection of nucleic acids, are disclosed. Arrays containing the immobilized nucleic acids and use of the immobilized nucleic acids in a variety of solid phase nucleic acid chemistry applications, including nucleic acid synthesis (chemical and enzymatic), hybridization and/or extension, and sequencing, are provided. Serial and parallel dispensing tools that can deliver defined volumes of fluid to generate multi-element arrays of sample material on a substrate surface are further provided. Tools provided herein can include an assembly of vesicle elements, or pins, wherein each of the pins can include a narrow interior chamber suitable for holding nanoliter volumes of fluid. Methods for dispensing tools that can be employed to generate multi-element arrays of sample material on a substrate surface are also provided.
    Type: Grant
    Filed: January 4, 2000
    Date of Patent: November 16, 2004
    Assignee: Sequenom, Inc.
    Inventors: Maryanne J. O'Donnell-Maloney, Charles R. Cantor, Hubert Köster
  • Publication number: 20040203092
    Abstract: A novel gene defining a novel human UDP-GlcNAc: Gal&bgr;1-3GalNAca &bgr;1,6GlcNAc-transferase, termed C2GnT3, with unique enzymatic properties is disclosed. The enzymatic activity of C2GnT3 is shown to be distinct from that of previously identified enzymes of this gene family. The invention discloses isolated DNA molecules and DNA constructs encoding C2GnT3 and derivatives thereof by way of amino acid deletion, substitution or insertion exhibiting C2GnT3 activity, as well as cloning and expression vectors including such DNA, cells transfected with the vectors, and recombinant methods for providing C2GnT3. The enzyme C2GnT3 and C2GnT3-active derivatives thereof are disclosed, in particular soluble derivatives comprising the catalytically active domain of C2GnT3.
    Type: Application
    Filed: May 11, 2004
    Publication date: October 14, 2004
    Applicant: Glycozym ApS
    Inventors: Tilo Schwientek, Henrik Clausen
  • Publication number: 20040191870
    Abstract: Disclosed are methods of 6-O-sulfating glucosaminyl N-acetylglucosamine residues (GlcNAc) in a polysaccharide preparation and methods of converting anticoagulant-inactive heparan sulfate to anticoagulant-active heparan sulfate and substantially pure polysaccharide preparations may by such methods. Also disclosed is a mutant CHO cell which hyper-produces anticoagulant-active heparan sulfate. Methods for elucidating the sequence of activity of enzymes in a biosynthetic pathway are provided.
    Type: Application
    Filed: March 25, 2004
    Publication date: September 30, 2004
    Inventors: Robert Rosenberg, Lijuan Zhang, David L Beeler
  • Publication number: 20040175750
    Abstract: The present invention relates to a method for quickly determining cAMP content or an adenylate cyclase activity in a biological sample containing non-cyclic adenine nucleotides without the use of radioactive agents.
    Type: Application
    Filed: March 24, 2004
    Publication date: September 9, 2004
    Inventor: Atsushi Sugiyama
  • Publication number: 20040175804
    Abstract: A method of making didanosine (ddI) including the steps of: (a) obtaining an enzyme expressing ddA deaminase activity; (b) immobilizing the enzyme onto an insoluble support; (c) contacting the enzyme with a dideoxyadenosine (ddA) solution of at least about 4% weight volume ddA in water for a time and under conditions to produce a ddI solution; and (d) isolating the ddI from the ddI solution. Optionally, the ddI mother liquor is reused in subsequent runs to improve yield.
    Type: Application
    Filed: February 26, 2004
    Publication date: September 9, 2004
    Inventors: Paul M. Skonezny, Michael Politino, Suo W. Liu, Alfred W. Boyle, Jason G. Chen, Gregory L. Stein, Thomas Franceschini, Wendy L. Anderson
  • Publication number: 20040175805
    Abstract: A method for fermentative production of S-adenosylmethionine (SAM), includes culturing a bacterial strain obtainable from a starting strain and having increased SAM-synthetase activity, compared to the starting strain, in a culture medium, the bacterial strain secreting SAM into the culture medium and the SAM being removed from the culture medium.
    Type: Application
    Filed: February 27, 2004
    Publication date: September 9, 2004
    Applicant: Consortium Fur Electrochemische Industrie GmbH
    Inventors: Susanne Leonhartsberger, Thomas Maier
  • Publication number: 20040171124
    Abstract: A process for the resolution of a racemic mixture of nucleoside enantiomers that includes the step of exposing the racemic mixture to an enzyme that preferentially catalyzes a reaction in one of the enantiomers. The nucleoside enantiomer (−)-2-hydroxymethyl-5-(5-fluorocytosin-1-yl)-1,3-oxathiolane is an effective antiviral agent against HIV, HBV, and other viruses replicating in a similar manner.
    Type: Application
    Filed: March 5, 2004
    Publication date: September 2, 2004
    Applicant: Emory University, Inc.
    Inventors: Dennis C. Liotta, Raymond F. Schinazi, Woo-Baeg Choi
  • Publication number: 20040166568
    Abstract: This invention relates to a process for producing a complex carbohydrate, which comprises: selecting, as enzyme sources, a culture broth of a microorganism capable of producing a sugar nucleotide from a nucleotide precursor and a sugar, or a treated product of the culture broth, and a culture broth of a microorganism or animal cell capable of producing a complex carbohydrate from a sugar nucleotide and a complex carbohydrate precursor, or a treated product of the culture broth; carrying out an enzyme reaction in an aqueous medium containing the enzyme sources, the nucleotide precursor, the sugar and the complex carbohydrate precursor to form and accumulate the complex carbohydrate in the aqueous medium; and recovering the complex carbohydrate from the aqueous medium, and a process for producing a sugar nucleotide, which comprises selecting, as an enzyme source, a culture broth of a microorganism capable of producing a sugar nucleotide from a nucleotide precursor and a sugar, or a treated product of the cultur
    Type: Application
    Filed: February 18, 2004
    Publication date: August 26, 2004
    Applicant: KYOWA HAKKO KOGYO CO. LTD.
    Inventors: Satoshi Koizumi, Hisaji Kawano, Kuniki Kino, Akio Ozaki
  • Publication number: 20040162424
    Abstract: Disclosed is a method of producing a compound with &bgr;1-4 linkage which contains the lactosamine structure involving reacting at least one donor substance Gal&bgr;OR where R is an organic group, and at least one acceptor substance which is a glucopyranosamino derivative having the formula GlcNR″-R′″, wherein NR″ is an azido, 2-N-acetyl-, 2-N-phtalimido, or an organic group bound to the 2-N-group of glucosamine, wherein R′″ is a glycosidically bound fluoro or is an O-, C-, N- or S-glycosidically bound aliphatic or aromatic compound, with the proviso that if NR″ is NRAc then R′″ is not OH and if NR″ is not NHAc then R′″ may be OH, in the presence of Bullera singularis or an E.C. group 3.2 glycosidase of essentially the same structure as an E.C. Group 3.2 glycosidase obtained from Bullera singularis to form the lactosamine derivative; and optionally isolating the compound with &bgr;1-4 linkage which contains the lactosamine structure.
    Type: Application
    Filed: October 3, 2003
    Publication date: August 19, 2004
    Inventor: Kurt Nilsson
  • Publication number: 20040156837
    Abstract: The present invention is directed to sialytransferases, such as SiaA sialytransferases isolated from Haemophilus influenzae. Further provided herein are methods for producing sialylated lipooligosaccharides, vaccines, and host cells and systems for the production of sialylated lipooligosaccharides.
    Type: Application
    Filed: February 12, 2003
    Publication date: August 12, 2004
    Inventors: Michael A. Apicella, Bradford W. Gibson, Nancy J. Phillips, Paul A. Jones
  • Publication number: 20040152171
    Abstract: Nucleoside 5′-phosphate ester is produced by culturing a bacterium belonging to the genus Escherichia having an ability to produce nucleoside 5′-phosphate ester, in which ushA gene and aphA gene do not function normally, in a medium to produce and accumulate nucleoside 5′-phosphate ester in the medium, and collecting the nucleoside 5′-phosphate ester from the medium.
    Type: Application
    Filed: March 12, 2004
    Publication date: August 5, 2004
    Applicant: AJINOMOTO CO., INC.
    Inventors: Masahiro Kakehi, Yoshihiro Usuda, Yukiko Tabira, Shinichi Sugimoto
  • Publication number: 20040146993
    Abstract: A method of isolating chondroitin sulfate product from a feedstock comprising connective tissue.
    Type: Application
    Filed: November 10, 2003
    Publication date: July 29, 2004
    Inventors: Anil B. Khare, Stephen Andrew Houliston, Timothy James Black
  • Publication number: 20040146994
    Abstract: Glycosaminoglycans derived from the K5 polysaccharide having high anticoagulant and antithrombotic activity obtained by a process comprising the preparation of the K5 polysaccharide from Escherichia coli, N-deacetilation/N-sulfation, C-5 epimerization, supersulfation, selective O-desulfation, selective 6-O sulfation and N-sulfation, wherein said epimerization is carried out using the glucuronosyl C-5 epimerase enzyme in solution or in immobilized form in presence of specific divalent cations.
    Type: Application
    Filed: December 21, 2002
    Publication date: July 29, 2004
    Inventors: Giorgio Zoppetti, Pasqua Oreste, Giovanni Cipolletti
  • Publication number: 20040142363
    Abstract: N-acetylglycosaminyltransferase V nucleic acids, proteins encoded by the nucleic acids, and uses of the nucleic acids and proteins.
    Type: Application
    Filed: December 4, 2003
    Publication date: July 22, 2004
    Applicant: GlycoDesign Holdings Ltd.
    Inventors: Bozena Korczak, April Lew
  • Publication number: 20040132143
    Abstract: The present invention relates to methodology for polymer grafting by a polysaccharide synthase and, more particularly, polymer grafting using the hyaluronate or chondroitin or heparin/heparosan synthases from Pasteurella, in order to create a variety of glycosaminoglycan oligosaccharides having a natural or chimeric or hybrid sugar structure with a targeted size that are substantially monodisperse in size.
    Type: Application
    Filed: August 15, 2003
    Publication date: July 8, 2004
    Inventors: Paul L. DeAngelis, Wei Jing
  • Publication number: 20040132142
    Abstract: It is to provide a method for producing hyaluronic acid or a hyaluronic acid derivative which is a simple preparation method as compared with a cockscomb extraction method or a fermentation method which has conventionally been employed industrially, and with which isolation and purification of the product from the reaction liquid is easy. It is a method for producing hyaluronic acid or a hyaluronic acid derivative, which comprises acting a hyaluronidase on an oxazoline derivative.
    Type: Application
    Filed: September 15, 2003
    Publication date: July 8, 2004
    Inventors: Shiro Kobayashi, Masashi Ohmae
  • Publication number: 20040126853
    Abstract: A method of flocculating a micro-organism and/or removal of high molecular weight contaminants from a fermentation broth, comprising adding a divalent salt to the fermentation broth comprising a glycosaminoglucan of interest after which the micro-organism and/or the high molecular weight contaminants are removed, wherein said micro-organism produces the glycosaminoglucan of interest.
    Type: Application
    Filed: December 12, 2003
    Publication date: July 1, 2004
    Applicant: Novozymes A/S
    Inventor: Eric Thwaites
  • Patent number: 6753154
    Abstract: A human AZU-1 gene, mutants, variants and fragments thereof. Protein products encoded by the AZU-1 gene and homologs encoded by the variants of AZU-1 gene acting as tumor suppressors or markers of malignancy progression and tumorigenicity reversion. Identification, isolation and characterization of AZU-1 and AZU-2 genes localized to a tumor suppressive locus at chromosome 10q26, highly expressed in nonmalignant and premalignant cells derived from a human breast tumor progression model. A recombinant full length protein sequences encoded by the AZU-1 gene and nucleotide sequences of AZU-1 and AZU-2 genes and variant and fragments thereof. Monoclonal or polyclonal antibodies specific to AZU-1, AZU-2 encoded protein and to AZU-1, or AZU-2 encoded protein homologs.
    Type: Grant
    Filed: June 25, 1999
    Date of Patent: June 22, 2004
    Assignee: The Regents of the University of California
    Inventors: Huei-Mei Chen, Mina Bissell
  • Publication number: 20040115763
    Abstract: The present invention provides a novel polypeptide having a &bgr;1,3-N-acetylglucosaminyltransferase activity, an agent for synthesizing a sugar chain comprising the polypeptide, a process for producing a sugar chain or a complex carbohydrate using the agent for synthesizing a sugar chain, DNA encoding the polypeptide, a process for producing the polypeptide, an antibody against the polypeptide, and a diagnosis method and a medicament for treatment for inflammation, cancer or tumor metastasis using the DNA or the antibody. The present invention is useful for synthesis of a useful sugar chain and diagnosis and treatment for inflammatory diseases, cancer or tumor metastasis.
    Type: Application
    Filed: September 12, 2003
    Publication date: June 17, 2004
    Inventors: Hisashi Narimatsu, Katsutoshi Sasaki, Ayumi Natsume, Hiroyuki Mio, Satoshi Nakagawa, Susumu Sekine, Akira Togayachi
  • Publication number: 20040096947
    Abstract: The present invention is directed to methods for the preparation of 3′-O and 5′-O-levulinyl nucleosides from common precursors using an enzymatic approach.
    Type: Application
    Filed: November 3, 2003
    Publication date: May 20, 2004
    Inventors: Yogesh S. Sanghvi, Vicente Gotor, Miguel Ferrero, Susana Fernandez, Javier Garcia
  • Publication number: 20040091985
    Abstract: A gene encoding an enzyme required for operation of a novel biochemical pathway for oxidation of the reduced phosphorus (P) compound phosphite was cloned from Pseudomonas and also found in other bacteria. The enzyme (designated PtxD) was overproduced in the host Escherichia coli by use of a recombinant system and purified to homogeneity via a two-step affinity protocol and characterized. The enzyme stoichiometrically produces NADH and phosphate from NAD and phosphite. Mechanistic studies indicate stereoselective transfer of hydride from phosphite to the Re-face of NAD+ with observed steady-state kinetic isotope effects of 2.1 on Vmax and 1.8 on Vmax/Km. The novel enzyme is useful for methods requiring regenerating the cofactor NADH, for use in synthetic oxidoreductases, and to synthesize chiral compounds, complex carbohydrates, and isotopically-labelled compounds.
    Type: Application
    Filed: February 21, 2003
    Publication date: May 13, 2004
    Inventors: William W. Metcalf, Wilfred A. van der Donk, Jennifer M. Vrtis, Andrea K. White, Amaya M. Garcia Costas